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[Bioc-devel] asBam Default Destination

2 messages · Dario Strbenac, Martin Morgan

#
Good day,

The destination parameter is mandatory and has no default.
Error in is(path, "RsamtoolsFile") : 
  argument "destination" is missing, with no default

Would a good default be the same path as as the input file, but having the suffix "bam" instead of "sam"?

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Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
#
On 01/06/2017 06:00 AM, Dario Strbenac wrote:
thanks for the suggestion, this (and likewise for asSam()) is 
implemented in 1.27.11.

Martin
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