Hi Tim,
This package should be fixed now. I've synced your github repo with the one on git.bioconductor.org.
Please check to make sure everything is as expected including the size.
Best,
Nitesh
?On 4/1/21, 6:22 AM, "Bioc-devel on behalf of Triche, Tim" <bioc-devel-bounces at r-project.org on behalf of Tim.Triche at vai.org> wrote:
Hi all,
We had a couple of chr22 BAMs in this package that kept sneaking in, so I nuked them with the BFG and would like to request a reset (force pull) upstream into the BioC git server repo (git at git.bioconductor.org:packages/spiky). This should allow for us to proceed with committing the various bugfixes and changes that have occurred downstream of BioC (about 46 last time I checked) and make sure we have cleaned up everything on the spb.
I nuked everything larger than 10M (realistically I could have whacked everything larger than 3M but 10M was sufficient to catch the BAMs).
Thanks!
Timothy J. Triche, Jr., PhD
Assistant Professor of Bioinformatics, Van Andel Institute
330 Bostwick Avenue NE, Grand Rapids, MI, 49503
(616) 234-5316 (office)
(626) 375-9663 (mobile)
(616) 234-5252 (administrative, courtesy of Lauren Dunkelberg)
https://trichelab.vai.org/
_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] BFG cleanup on `spiky` repo (under submission)
2 messages · Nitesh Turaga, Triche, Tim
1 day later
Thanks Nitesh! It looks like this worked, now we just need to squash the R CMD Check issues that arose in the meantime :-) Much obliged, Timothy J. Triche, Jr., PhD Assistant Professor of Bioinformatics, Van Andel Institute 330 Bostwick Avenue NE, Grand Rapids, MI, 49503 (616) 234-5316 (office) (626) 375-9663 (mobile) (616) 234-5252 (administrative, courtesy of Lauren Dunkelberg) https://trichelab.vai.org/
From: Nitesh Turaga <nturaga.bioc at gmail.com>
Sent: Monday, April 5, 2021 12:10 PM
To: Triche, Tim; bioc-devel at r-project.org
Cc: Harmon, Lauren
Subject: [External] Re: [Bioc-devel] BFG cleanup on `spiky` repo (under submission)
Sent: Monday, April 5, 2021 12:10 PM
To: Triche, Tim; bioc-devel at r-project.org
Cc: Harmon, Lauren
Subject: [External] Re: [Bioc-devel] BFG cleanup on `spiky` repo (under submission)
Hi Tim,
This package should be fixed now. I've synced your github repo with the one on git.bioconductor.org.
Please check to make sure everything is as expected including the size.
Best,
Nitesh
?On 4/1/21, 6:22 AM, "Bioc-devel on behalf of Triche, Tim" <bioc-devel-bounces at r-project.org on behalf of Tim.Triche at vai.org> wrote:
Hi all,
We had a couple of chr22 BAMs in this package that kept sneaking in, so I nuked them with the BFG and would like to request a reset (force pull) upstream into the BioC git server repo (git at git.bioconductor.org:packages/spiky). This should allow for us to proceed with committing the various bugfixes and changes that have occurred downstream of BioC (about 46 last time I checked) and make sure we have cleaned up everything on the spb.
I nuked everything larger than 10M (realistically I could have whacked everything larger than 3M but 10M was sufficient to catch the BAMs).
Thanks!
Timothy J. Triche, Jr., PhD
Assistant Professor of Bioinformatics, Van Andel Institute
330 Bostwick Avenue NE, Grand Rapids, MI, 49503
(616) 234-5316 (office)
(626) 375-9663 (mobile)
(616) 234-5252 (administrative, courtesy of Lauren Dunkelberg)
https://trichelab.vai.org/
_______________________________________________
Bioc-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
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