Bioc-devel - April 2021 - Thread View

[Bioc-devel] Build error on Mac re: Arial font and polygon edges

2 msgs Apr 30

Shraddha Pai Build error on Mac re: Arial font and polygon edges Apr 30, 2021

Hervé Pagès Build error on Mac re: Arial font and polygon edges Apr 30, 2021

[Bioc-devel] ncRNAtools not available for R 4.1.0

1 msg Apr 30

Selles Vidal, Lara ncRNAtools not available for R 4.1.0 Apr 30, 2021

[Bioc-devel] msqrob2 0.99.3 valid push and build started but no build report

1 msg Apr 29

Lieven Clement msqrob2 0.99.3 valid push and build started but no build report Apr 29, 2021

[Bioc-devel] documentation of raw data

1 msg Apr 29

Severin Bang documentation of raw data Apr 29, 2021

[Bioc-devel] lazy loading failure on macOS

2 msgs Apr 28

Waldir Leoncio Netto lazy loading failure on macOS Apr 27, 2021

Hervé Pagès lazy loading failure on macOS Apr 28, 2021

[Bioc-devel] nightly build errors while checking tests

2 msgs Apr 28

Kelly Street nightly build errors while checking tests Apr 28, 2021

Hervé Pagès nightly build errors while checking tests Apr 28, 2021

[Bioc-devel] Bioconductor nightly build fail - ewceData not available for EWCE

3 msgs Apr 28

Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Apr 27, 2021

Murphy, Alan E Bioconductor nightly build fail - ewceData not available for EWCE Apr 28, 2021

Hervé Pagès Bioconductor nightly build fail - ewceData not available for EWCE Apr 28, 2021

[Bioc-devel] upstream push error

2 msgs Apr 28

Lieven Clement upstream push error Apr 28, 2021

Nitesh Turaga upstream push error Apr 28, 2021

[Bioc-devel] Error pushing upstream

2 msgs Apr 28

Pedro Baldoni Error pushing upstream Apr 28, 2021

Nitesh Turaga Error pushing upstream Apr 28, 2021

[Bioc-devel] unable to push to new package

5 msgs Apr 27

Gross Fridolin unable to push to new package Apr 23, 2021

Nitesh Turaga unable to push to new package Apr 23, 2021

Gross Fridolin unable to push to new package Apr 27, 2021

Nitesh Turaga unable to push to new package Apr 27, 2021

[Bioc-devel] R CMD CHECK warning -

2 msgs Apr 27

alan murphy R CMD CHECK warning - Apr 27, 2021

Vincent Carey R CMD CHECK warning - Apr 27, 2021

[Bioc-devel] biomaRt error during nigthly 'devel' build

3 msgs Apr 26

Ilyess RACHEDI biomaRt error during nigthly 'devel' build Apr 23, 2021

Mike Smith biomaRt error during nigthly 'devel' build Apr 23, 2021

Ilyess RACHEDI biomaRt error during nigthly 'devel' build Apr 26, 2021

[Bioc-devel] CGEN package maintainer change request

1 msg Apr 23

Nitesh Turaga CGEN package maintainer change request Apr 23, 2021

[Bioc-devel] CGEN package maintainer change request

2 msgs Apr 23

Wheeler, Bill (IMS) CGEN package maintainer change request Apr 23, 2021

Nitesh Turaga CGEN package maintainer change request Apr 23, 2021

[Bioc-devel] Bioconductor Package Version

1 msg Apr 23

Nitesh Turaga Bioconductor Package Version Apr 23, 2021

[Bioc-devel] Reference inst/extdata files in vignette

3 msgs Apr 23

alan murphy Reference inst/extdata files in vignette Apr 22, 2021

Hervé Pagès Reference inst/extdata files in vignette Apr 22, 2021

alan murphy Reference inst/extdata files in vignette Apr 23, 2021

[Bioc-devel] Bioconductor 3.13 New Package Submission Deadline This Friday

1 msg Apr 21

Shepherd, Lori Bioconductor 3.13 New Package Submission Deadline This Friday Apr 21, 2021

[Bioc-devel] Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina)

3 msgs Apr 21

Mark Pinese Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 20, 2021

Hervé Pagès Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 20, 2021

Shepherd, Lori Cannot reproduce "TeX capacity exceeded" error on build hosts (package messina) Apr 21, 2021

[Bioc-devel] Phase 3 1000 genomes reference genome

2 msgs Apr 20

Murphy, Alan E Phase 3 1000 genomes reference genome Apr 16, 2021

Hervé Pagès Phase 3 1000 genomes reference genome Apr 20, 2021

[Bioc-devel] "r/markdown package should be declared as a dependency" error

1 msg Apr 20

Hervé Pagès "r/markdown package should be declared as a dependency" error Apr 20, 2021

[Bioc-devel] Bioconductor Package Version

2 msgs Apr 19

AJ Kinstlick Bioconductor Package Version Apr 19, 2021

Shepherd, Lori Bioconductor Package Version Apr 19, 2021

[Bioc-devel] New maintainer for BASiCS

2 msgs Apr 19

VALLEJOS Catalina New maintainer for BASiCS Apr 14, 2021

Nitesh Turaga New maintainer for BASiCS Apr 19, 2021

[Bioc-devel] Update maintainer of nucleR package

2 msgs Apr 19

Diego Gallego Update maintainer of nucleR package Apr 16, 2021

Nitesh Turaga Update maintainer of nucleR package Apr 19, 2021

[Bioc-devel] Error building package

4 msgs Apr 19

ELENI ADAM Error building package Apr 16, 2021

alan murphy Error building package Apr 17, 2021

Shepherd, Lori Error building package Apr 19, 2021

ELENI ADAM Error building package Apr 19, 2021

[Bioc-devel] helper function arguments: best practice

4 msgs Apr 19

Severin Bang helper function arguments: best practice Apr 16, 2021

Manders-2, F.M. helper function arguments: best practice Apr 19, 2021

Severin Bang helper function arguments: best practice Apr 19, 2021

Manders-2, F.M. helper function arguments: best practice Apr 19, 2021

[Bioc-devel] AtomicList issue with under R-devel - GenomicRanges/S4Vectors

1 msg Apr 19

Pierre-Luc Germain AtomicList issue with under R-devel - GenomicRanges/S4Vectors Apr 19, 2021

[Bioc-devel] biocLite not installing

2 msgs Apr 16

Diaz, Josue E. biocLite not installing Apr 12, 2021

Vincent Carey biocLite not installing Apr 16, 2021

[Bioc-devel] How to proper write documentation (Rd) file for setReplaceMethod

3 msgs Apr 15

Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Apr 14, 2021

Shepherd, Lori How to proper write documentation (Rd) file for setReplaceMethod Apr 15, 2021

Jianhong Ou, Ph.D. How to proper write documentation (Rd) file for setReplaceMethod Apr 15, 2021

[Bioc-devel] Bioconductor package InterMineR

1 msg Apr 15

Nitesh Turaga Bioconductor package InterMineR Apr 15, 2021

[Bioc-devel] R CMD CHECK time out on Windows machine

1 msg Apr 14

Murphy, Alan E R CMD CHECK time out on Windows machine Apr 14, 2021

[Bioc-devel] Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!

1 msg Apr 14

Shepherd, Lori Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines! Apr 14, 2021

[Bioc-devel] Deadline for New package submission for release 3.13

1 msg Apr 13

Shepherd, Lori Deadline for New package submission for release 3.13 Apr 13, 2021

[Bioc-devel] List of Deprecated Packages Bioconductor 3.13

1 msg Apr 12

Shepherd, Lori List of Deprecated Packages Bioconductor 3.13 Apr 12, 2021

[Bioc-devel] Bioconductor Release 3.13 schedule

1 msg Apr 12

Shepherd, Lori Bioconductor Release 3.13 schedule Apr 12, 2021

[Bioc-devel] Error building on Mac

3 msgs Apr 9

Oluwafemi OLUSOJI Error building on Mac Apr 8, 2021

Hervé Pagès Error building on Mac Apr 8, 2021

Shepherd, Lori Error building on Mac Apr 9, 2021

[Bioc-devel] Suppressing messages from Rprofile

5 msgs Apr 9

Mike Smith Suppressing messages from Rprofile Apr 7, 2021

Henrik Bengtsson Suppressing messages from Rprofile Apr 7, 2021

Kasper Daniel Hansen Suppressing messages from Rprofile Apr 8, 2021

Mike Smith Suppressing messages from Rprofile Apr 9, 2021

[Bioc-devel] BiocCheck and version requirement

7 msgs Apr 8

Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021

Shepherd, Lori BiocCheck and version requirement Apr 8, 2021

Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021

Shepherd, Lori BiocCheck and version requirement Apr 8, 2021

Henrik Bengtsson BiocCheck and version requirement Apr 8, 2021

Kasper Daniel Hansen BiocCheck and version requirement Apr 8, 2021

Henrik Bengtsson BiocCheck and version requirement Apr 8, 2021

[Bioc-devel] Updates to BiocFileCache, AnnotationHub, and ExperimentHub

10 msgs Apr 8

Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 5, 2021

Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Vincent Carey Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Aaron Lun Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Henrik Bengtsson Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 7, 2021

Shepherd, Lori Updates to BiocFileCache, AnnotationHub, and ExperimentHub Apr 8, 2021

[Bioc-devel] Error: Support site registration

2 msgs Apr 8

Oluwafemi OLUSOJI Error: Support site registration Apr 8, 2021

Shepherd, Lori Error: Support site registration Apr 8, 2021

[Bioc-devel] Data hosting for workflow packages

1 msg Apr 7

Joseph Lee Jing Xian Data hosting for workflow packages Apr 7, 2021

[Bioc-devel] Ask for help to debug the error on riesling1

5 msgs Apr 7

Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 6, 2021

Hervé Pagès Ask for help to debug the error on riesling1 Apr 6, 2021

Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 7, 2021

Martin Morgan Ask for help to debug the error on riesling1 Apr 7, 2021

Jianhong Ou, Ph.D. Ask for help to debug the error on riesling1 Apr 7, 2021

[Bioc-devel] BFG repo cleanup for package under review

3 msgs Apr 7

Spencer Nystrom BFG repo cleanup for package under review Apr 7, 2021

Nitesh Turaga BFG repo cleanup for package under review Apr 7, 2021

[Bioc-devel] Best practice use pkgdown, docker with Bioconductor

6 msgs Apr 6

Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

Andris Jankevics Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

Jianhong Ou, Ph.D. Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

David Jimenez-Morales Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

Murphy, Alan E Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

Marcel Ramos EXTERNAL: Re: Best practice use pkgdown, docker with Bioconductor Apr 6, 2021

[Bioc-devel] BFG cleanup on `spiky` repo (under submission)

2 msgs Apr 6

Nitesh Turaga BFG cleanup on `spiky` repo (under submission) Apr 5, 2021

Triche, Tim BFG cleanup on `spiky` repo (under submission) Apr 6, 2021

[Bioc-devel] non-subsettable GRanges object

4 msgs Apr 5

Oleksii Nikolaienko non-subsettable GRanges object Apr 5, 2021

Hervé Pagès non-subsettable GRanges object Apr 5, 2021

Oleksii Nikolaienko non-subsettable GRanges object Apr 5, 2021

[Bioc-devel] Adding new "DifferentialDNA3DStructure" to biocViews

3 msgs Apr 5

Matthias Zytnicki Adding new "DifferentialDNA3DStructure" to biocViews Apr 2, 2021

Tim Triche, Jr. Adding new "DifferentialDNA3DStructure" to biocViews Apr 3, 2021

Shepherd, Lori Adding new "DifferentialDNA3DStructure" to biocViews Apr 5, 2021

[Bioc-devel] Bioconductor Git Credentials error

4 msgs Apr 2

Nitesh Turaga Bioconductor Git Credentials error Apr 2, 2021

raman sethi Bioconductor Git Credentials error Apr 2, 2021

Ashish Jain Bioconductor Git Credentials error Apr 2, 2021

Nitesh Turaga Bioconductor Git Credentials error Apr 2, 2021

[Bioc-devel] Not able to login or reset password on BiocCredentials website

3 msgs Apr 2

Ashish Jain Not able to login or reset password on BiocCredentials website Apr 1, 2021

Nitesh Turaga Not able to login or reset password on BiocCredentials website Apr 2, 2021

[Bioc-devel] Force push after BFG cleanup for `memes` package submission

1 msg Apr 2

Spencer Nystrom Force push after BFG cleanup for `memes` package submission Apr 2, 2021

[Bioc-devel] BFG cleanup on `spiky` repo (under submission)

1 msg Apr 1

Nitesh Turaga BFG cleanup on `spiky` repo (under submission) Apr 1, 2021

Bioc-devel April 2021