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[Bioc-devel] bsseqData

4 messages · Turaga, Nitesh, Peter Hickey

Original
Turaga, Nitesh
# 
Hi Pete,

Can you try once again please? And this time send me the following information if it doesn?t work.

	git remote -v

and

	ls -r (or tree) .git/hooks/

and 

	git branch -a


Thanks,

Nitesh
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Peter Hickey
# 
Hi Nitesh,

I did a fresh clone, updated the package, and committed the changes,
but am still unable to push to the bioc git repo. Requested output
below.

$ git clone git at git.bioconductor.org:packages/bsseqData
# Make updates and commit
$ git push origin master
Counting objects: 7, done.
Delta compression using up to 4 threads.
Compressing objects: 100% (7/7), done.
Writing objects: 100% (7/7), 67.52 MiB | 1.35 MiB/s, done.
Total 7 (delta 2), reused 0 (delta 0)
remote: Error: file larger than 5 Mb.
remote:
remote:     File name: 'data/BS.cancer.ex.fit.rda'
remote:     File size: 41.5 Mb
remote:
remote: Please see Biocondcutor guidelines
remote: https://bioconductor.org/developers/package-guidelines/
remote:
To git.bioconductor.org:packages/bsseqData
 ! [remote rejected] master -> master (pre-receive hook declined)
error: failed to push some refs to 'git at git.bioconductor.org:packages/bsseqData'

$ git remote -v
origin git at git.bioconductor.org:packages/bsseqData (fetch)
origin git at git.bioconductor.org:packages/bsseqData (push)

$ tree .git/hooks/
.git/hooks/
??? applypatch-msg.sample
??? commit-msg.sample
??? post-update.sample
??? pre-applypatch.sample
??? pre-commit.sample
??? pre-push.sample
??? pre-rebase.sample
??? pre-receive.sample
??? prepare-commit-msg.sample
??? update.sample

$ git branch -a
* master
  remotes/origin/HEAD -> origin/master
  remotes/origin/RELEASE_2_13
  remotes/origin/RELEASE_2_14
  remotes/origin/RELEASE_3_0
  remotes/origin/RELEASE_3_1
  remotes/origin/RELEASE_3_2
  remotes/origin/RELEASE_3_3
  remotes/origin/RELEASE_3_4
  remotes/origin/RELEASE_3_5
  remotes/origin/RELEASE_3_6
  remotes/origin/RELEASE_3_7
  remotes/origin/master

$ git log
commit 5eb4c1ebc03fb1d713e873a77570744b94dc7659
Author: Peter Hickey <peter.hickey at gmail.com>
Date:   Wed May 2 13:14:24 2018 -0400

    Run updateObject() on serialized objects

commit 153db702379b926743f26012a34c8076b37f91f9
Author: Nitesh Turaga <nitesh.turaga at gmail.com>
Date:   Mon Apr 30 10:34:47 2018 -0400

    bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

commit e02c0503b1f75b5ec4caffd055645d3b060d2af9
Author: Nitesh Turaga <nitesh.turaga at gmail.com>
Date:   Mon Apr 30 10:31:27 2018 -0400

    bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

commit 3f87e4d027264396bdeeeb87baa68fb3b6662b46
Author: Peter Hickey <peter.hickey at gmail.com>
Date:   Sun Apr 29 12:31:34 2018 -0400

    Bump minimum version of bsseq

# git log output continues


On Wed, 2 May 2018 at 11:36 Turaga, Nitesh
<Nitesh.Turaga at roswellpark.org> wrote:
Turaga, Nitesh
# 
Try one more time please. 

I made some changes after seeing your output. 

Best,

Nitesh
This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Peter Hickey
# 
Successful pushed to both devel and release. Thanks, Nitesh!

On Wed., 2 May 2018, 1:35 pm Turaga, Nitesh, <Nitesh.Turaga at roswellpark.org>
wrote: