Bioc-devel - May 2018 - Thread View

[Bioc-devel] onLoad failed for rJava in nigthly 'devel' build

1 msg May 31

Lulu Chen onLoad failed for rJava in nigthly 'devel' build May 31, 2018

[Bioc-devel] Windows, normalizePath(), and non-ASCII characters

2 msgs May 31

Mike Smith Windows, normalizePath(), and non-ASCII characters May 22, 2018

Obenchain, Valerie Windows, normalizePath(), and non-ASCII characters May 31, 2018

[Bioc-devel] build cache on bioconductor build system?

6 msgs May 31

Vivek Bhardwaj build cache on bioconductor build system? May 30, 2018

Martin Morgan build cache on bioconductor build system? May 30, 2018

Vivek Bhardwaj build cache on bioconductor build system? May 30, 2018

Hervé Pagès build cache on bioconductor build system? May 30, 2018

Vivek Bhardwaj build cache on bioconductor build system? May 31, 2018

Shepherd, Lori build cache on bioconductor build system? May 31, 2018

[Bioc-devel] build report repeating the same error

2 msgs May 30

Sara Linker build report repeating the same error May 30, 2018

Shepherd, Lori build report repeating the same error May 30, 2018

[Bioc-devel] Time out in R CMD check

2 msgs May 30

Xu Ren Time out in R CMD check May 27, 2018

Shepherd, Lori Time out in R CMD check May 30, 2018

[Bioc-devel] How best to remap S4Vectors::Hits indices?

3 msgs May 25

Pariksheet Nanda How best to remap S4Vectors::Hits indices? May 22, 2018

Pariksheet Nanda How best to remap S4Vectors::Hits indices? May 24, 2018

Hervé Pagès How best to remap S4Vectors::Hits indices? May 25, 2018

[Bioc-devel] BiocInstaller: next generation

16 msgs May 24

Martin Morgan BiocInstaller: next generation May 9, 2018

Ryan BiocInstaller: next generation May 9, 2018

Aaron Lun BiocInstaller: next generation May 9, 2018

Martin Morgan BiocInstaller: next generation May 9, 2018

Henrik Bengtsson BiocInstaller: next generation May 9, 2018

Pariksheet Nanda BiocInstaller: next generation May 9, 2018

Martin Morgan BiocInstaller: next generation May 10, 2018

Lluís Revilla BiocInstaller: next generation May 11, 2018

Dario Strbenac BiocInstaller: next generation May 11, 2018

Martin Morgan BiocInstaller: next generation May 11, 2018

Martin Morgan BiocInstaller: next generation May 14, 2018

Neumann, Steffen BiocInstaller: next generation May 18, 2018

James W. MacDonald BiocInstaller: next generation May 18, 2018

Martin Morgan BiocInstaller: next generation May 18, 2018

Neumann, Steffen BiocInstaller: next generation May 24, 2018

[Bioc-devel] Examples of reading files of not allowed type

2 msgs May 24

Jordan Bisanz Examples of reading files of not allowed type May 23, 2018

Martin Morgan Examples of reading files of not allowed type May 24, 2018

[Bioc-devel] List of Deprecated Packages for Bioc3.8

1 msg May 23

Shepherd, Lori List of Deprecated Packages for Bioc3.8 May 23, 2018

[Bioc-devel] Update existing packages and change name

2 msgs May 22

Sokratis Kariotis Update existing packages and change name May 22, 2018

Martin Morgan Update existing packages and change name May 22, 2018

[Bioc-devel] any interest in a BiocMatrix core package?

1 msg May 21

Peter Hickey any interest in a BiocMatrix core package? May 21, 2018

[Bioc-devel] Build error in tokay2: cannot reserve space for vector

3 msgs May 21

Sergio Picart Armada Build error in tokay2: cannot reserve space for vector May 18, 2018

Martin Morgan Build error in tokay2: cannot reserve space for vector May 21, 2018

Hervé Pagès Build error in tokay2: cannot reserve space for vector May 21, 2018

[Bioc-devel] modify _R_CHECK_FORCE_SUGGESTS_ ?

10 msgs May 21

Vivek Bhardwaj modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Gabriel Becker modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Gabriel Becker modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Martin Morgan modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? May 18, 2018

Vivek Bhardwaj modify _R_CHECK_FORCE_SUGGESTS_ ? May 19, 2018

Michael Lawrence modify _R_CHECK_FORCE_SUGGESTS_ ? May 19, 2018

Hervé Pagès modify _R_CHECK_FORCE_SUGGESTS_ ? May 21, 2018

[Bioc-devel] MoonlightR maintainer

2 msgs May 21

Catharina Olsen MoonlightR maintainer May 21, 2018

Turaga, Nitesh MoonlightR maintainer May 21, 2018

[Bioc-devel] Access rights to data packages

4 msgs May 21

Nuno Agostinho Access rights to data packages May 21, 2018

Shepherd, Lori Access rights to data packages May 21, 2018

Nuno Agostinho Access rights to data packages May 21, 2018

Shepherd, Lori Access rights to data packages May 21, 2018

[Bioc-devel] merge two maintainer accounts

2 msgs May 21

Rhonda Bacher merge two maintainer accounts May 19, 2018

Obenchain, Valerie merge two maintainer accounts May 21, 2018

[Bioc-devel] Batch Package Submission

3 msgs May 21

Paolo Martini Batch Package Submission May 17, 2018

Hervé Pagès Batch Package Submission May 17, 2018

Paolo Martini Batch Package Submission May 21, 2018

[Bioc-devel] typo on website 'install' page

2 msgs May 18

Tim Triche, Jr. typo on website 'install' page May 18, 2018

Shepherd, Lori typo on website 'install' page May 18, 2018

[Bioc-devel] About MLSeq Package

2 msgs May 17

Gökmen Zararsız About MLSeq Package May 16, 2018

Obenchain, Valerie About MLSeq Package May 17, 2018

[Bioc-devel] reopen issue (submission) on github

4 msgs May 17

Kort, Eric reopen issue (submission) on github May 17, 2018

Shepherd, Lori reopen issue (submission) on github May 17, 2018

Kort, Eric reopen issue (submission) on github May 17, 2018

Shepherd, Lori reopen issue (submission) on github May 17, 2018

[Bioc-devel] Build time-out on malbec1

3 msgs May 17

Nicolas Delhomme Build time-out on malbec1 May 14, 2018

Shepherd, Lori Build time-out on malbec1 May 17, 2018

Nicolas Delhomme Build time-out on malbec1 May 17, 2018

[Bioc-devel] BiocInstaller: next generation

3 msgs May 16

Nicolas Descostes BiocInstaller: next generation May 16, 2018

Martin Morgan BiocInstaller: next generation May 16, 2018

Nicolas Descostes BiocInstaller: next generation May 16, 2018

[Bioc-devel] rsvg on mac

4 msgs May 15

Kevin Horan rsvg on mac May 9, 2018

Obenchain, Valerie rsvg on mac May 9, 2018

Kevin Horan rsvg on mac May 14, 2018

Obenchain, Valerie rsvg on mac May 15, 2018

[Bioc-devel] Problem showing a GRanges with a meta data column of data frame

4 msgs May 15

Jialin Ma Problem showing a GRanges with a meta data column of data frame May 14, 2018

Jialin Ma [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] May 14, 2018

Hervé Pagès [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] May 15, 2018

Jialin Ma [Bioc-devel] [Fwd: Problem showing a GRanges with a meta data column of data frame] May 15, 2018

[Bioc-devel] Package download when using functions from affy and oligo

9 msgs May 15

Joris Meys Package download when using functions from affy and oligo May 2, 2018

Obenchain, Valerie Package download when using functions from affy and oligo May 4, 2018

James W. MacDonald Package download when using functions from affy and oligo May 4, 2018

Joris Meys Package download when using functions from affy and oligo May 5, 2018

Vincent Carey Package download when using functions from affy and oligo May 5, 2018

Joris Meys Package download when using functions from affy and oligo May 14, 2018

Martin Morgan Package download when using functions from affy and oligo May 14, 2018

Ben Bolstad Package download when using functions from affy and oligo May 15, 2018

[Bioc-devel] Cannot update my development package to Bioconductor

8 msgs May 15

cstrato Cannot update my development package to Bioconductor May 14, 2018

Turaga, Nitesh Cannot update my development package to Bioconductor May 14, 2018

cstrato Cannot update my development package to Bioconductor May 14, 2018

Marcel Ramos EXTERNAL: Re: Cannot update my development package to Bioconductor May 14, 2018

Turaga, Nitesh EXTERNAL: Re: Cannot update my development package to Bioconductor May 15, 2018

cstrato EXTERNAL: Re: Cannot update my development package to Bioconductor May 15, 2018

Turaga, Nitesh EXTERNAL: Re: Cannot update my development package to Bioconductor May 15, 2018

cstrato EXTERNAL: Re: Cannot update my development package to Bioconductor May 15, 2018

[Bioc-devel] htSeqTools and giniCoverage error

5 msgs May 15

Nicolas Descostes htSeqTools and giniCoverage error May 13, 2018

Shepherd, Lori htSeqTools and giniCoverage error May 15, 2018

Nicolas Descostes htSeqTools and giniCoverage error May 15, 2018

Shepherd, Lori htSeqTools and giniCoverage error May 15, 2018

[Bioc-devel] Package size note

4 msgs May 15

Kenneth Condon Package size note May 12, 2018

Shepherd, Lori Package size note May 14, 2018

Kenneth Condon Package size note May 15, 2018

Kasper Daniel Hansen Package size note May 15, 2018

[Bioc-devel] GenomicRanges List subclass and apply

6 msgs May 14

Jack Fu GenomicRanges List subclass and apply May 14, 2018

Michael Lawrence GenomicRanges List subclass and apply May 14, 2018

Jack Fu GenomicRanges List subclass and apply May 14, 2018

Michael Lawrence GenomicRanges List subclass and apply May 14, 2018

Hervé Pagès GenomicRanges List subclass and apply May 14, 2018

Jack Fu GenomicRanges List subclass and apply May 14, 2018

[Bioc-devel] BSGenome submission.

4 msgs May 14

Jose V. Die BSGenome submission. May 11, 2018

Hervé Pagès BSGenome submission. May 13, 2018

Jose V. Die BSGenome submission. May 14, 2018

Hervé Pagès BSGenome submission. May 14, 2018

[Bioc-devel] Unexpected Warning About Cross-Reference Without Package Specification

9 msgs May 12

Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification May 10, 2018

Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification May 11, 2018

Martin Morgan Unexpected Warning About Cross-Reference Without Package Specification May 12, 2018

Dario Strbenac Unexpected Warning About Cross-Reference Without Package Specification May 12, 2018

[Bioc-devel] Vignette warnings/errors

5 msgs May 12

Kenneth Condon Vignette warnings/errors May 11, 2018

Martin Morgan Vignette warnings/errors May 11, 2018

Vincent Carey Vignette warnings/errors May 11, 2018

Kenneth Condon Vignette warnings/errors May 12, 2018

[Bioc-devel] CRAN R 3.5 binary - where is it?

7 msgs May 11

Kenneth Condon CRAN R 3.5 binary - where is it? May 10, 2018

Clarice Groeneveld CRAN R 3.5 binary - where is it? May 10, 2018

Hervé Pagès CRAN R 3.5 binary - where is it? May 10, 2018

Kenneth Condon CRAN R 3.5 binary - where is it? May 10, 2018

Hervé Pagès CRAN R 3.5 binary - where is it? May 10, 2018

Joris Meys CRAN R 3.5 binary - where is it? May 10, 2018

Kenneth Condon CRAN R 3.5 binary - where is it? May 11, 2018

[Bioc-devel] biocValid() and package version

3 msgs May 11

Nicolas Descostes biocValid() and package version May 10, 2018

Shepherd, Lori biocValid() and package version May 11, 2018

Nicolas Descostes biocValid() and package version May 11, 2018

[Bioc-devel] limma Suggests:statmod vs Imports:statmod

3 msgs May 11

Robert Castelo limma Suggests:statmod vs Imports:statmod May 10, 2018

Ryan limma Suggests:statmod vs Imports:statmod May 11, 2018

Robert Castelo limma Suggests:statmod vs Imports:statmod May 11, 2018

[Bioc-devel] BioC 2018 poster / talk / scholarship / workshop application deadline May 17

5 msgs May 10

Martin Morgan BioC 2018 poster / talk / scholarship / workshop application deadline May 17 May 6, 2018

Pijush Das BioC 2018 poster / talk / scholarship / workshop application deadline May 17 May 8, 2018

Martin Morgan BioC 2018 poster / talk / scholarship / workshop application deadline May 17 May 9, 2018

Pijush Das BioC 2018 poster / talk / scholarship / workshop application deadline May 17 May 10, 2018

Mike Smith BioC 2018 poster / talk / scholarship / workshop application deadline May 17 May 10, 2018

[Bioc-devel] class name collision in cache: igvR and Gviz

7 msgs May 10

Paul Shannon class name collision in cache: igvR and Gviz May 4, 2018

Hervé Pagès class name collision in cache: igvR and Gviz May 4, 2018

Michael Lawrence class name collision in cache: igvR and Gviz May 4, 2018

Paul Shannon class name collision in cache: igvR and Gviz May 7, 2018

Michael Lawrence class name collision in cache: igvR and Gviz May 8, 2018

Paul Shannon class name collision in cache: igvR and Gviz May 9, 2018

Michael Lawrence class name collision in cache: igvR and Gviz May 10, 2018

[Bioc-devel] Initial list of deprecated packages Bioc 3.8

1 msg May 9

Shepherd, Lori Initial list of deprecated packages Bioc 3.8 May 9, 2018

[Bioc-devel] Using https to maintain a package

4 msgs May 8

Monther Alhamdoosh Using https to maintain a package May 7, 2018

Sean Davis Using https to maintain a package May 8, 2018

Turaga, Nitesh Using https to maintain a package May 8, 2018

Monther Alhamdoosh Using https to maintain a package May 8, 2018

[Bioc-devel] proc.time error

3 msgs May 8

Anand MT proc.time error May 7, 2018

Martin Morgan proc.time error May 8, 2018

Anand MT proc.time error May 8, 2018

[Bioc-devel] Switch to SSH protocol for git clone instructions on package landing pages?

3 msgs May 7

Martin Morgan Switch to SSH protocol for git clone instructions on package landing pages? May 6, 2018

Kasper Daniel Hansen Switch to SSH protocol for git clone instructions on package landing pages? May 7, 2018

Shepherd, Lori Switch to SSH protocol for git clone instructions on package landing pages? May 7, 2018

[Bioc-devel] Updates to Single Package Builder for New Submissions

2 msgs May 7

Shepherd, Lori Updates to Single Package Builder for New Submissions May 7, 2018

[Bioc-devel] Transition from Google Sheet to Web App

2 msgs May 7

Obenchain, Valerie Transition from Google Sheet to Web App May 7, 2018

Lluís Revilla Transition from Google Sheet to Web App May 7, 2018

[Bioc-devel] DOI information

2 msgs May 4

Felix Ernst DOI information May 4, 2018

Sean Davis DOI information May 4, 2018

[Bioc-devel] errors on Windows 3.7 builds

2 msgs May 3

Obenchain, Valerie errors on Windows 3.7 builds May 3, 2018

[Bioc-devel] Strange error for windows build

2 msgs May 3

Christopher John Strange error for windows build May 3, 2018

Joris Meys Strange error for windows build May 3, 2018

[Bioc-devel] "Reviving" an existing workflow

3 msgs May 3

Bernd Klaus "Reviving" an existing workflow May 3, 2018

Shepherd, Lori "Reviving" an existing workflow May 3, 2018

Bernd Klaus "Reviving" an existing workflow May 3, 2018

[Bioc-devel] Common Windows build problems for `CountClust` and `Logolas`

1 msg May 3

kushal kumar dey Common Windows build problems for `CountClust` and `Logolas` May 3, 2018

[Bioc-devel] Email no longer active

5 msgs May 3

Maria Keays Email no longer active May 3, 2018

Obenchain, Valerie Email no longer active May 3, 2018

Maria Keays Email no longer active May 3, 2018

Obenchain, Valerie Email no longer active May 3, 2018

Maria Keays Email no longer active May 3, 2018

[Bioc-devel] no Mac in devel build report today

1 msg May 3

Obenchain, Valerie no Mac in devel build report today May 3, 2018

[Bioc-devel] "TissueEnrich" is failing on windows server in the BioC 3.7 build

1 msg May 3

Ashish Jain "TissueEnrich" is failing on windows server in the BioC 3.7 build May 3, 2018

[Bioc-devel] bsseqData

4 msgs May 2

Turaga, Nitesh bsseqData May 2, 2018

Peter Hickey bsseqData May 2, 2018

Turaga, Nitesh bsseqData May 2, 2018

Peter Hickey bsseqData May 2, 2018

[Bioc-devel] Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both)

2 msgs May 2

Elizabeth Purdom Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) May 2, 2018

Kasper Daniel Hansen Virtual class for `matrix` and `DelayedArray`? (or better strategy for dealing with them both) May 2, 2018

[Bioc-devel] Bioconductor 3.7 is released

1 msg May 1

Obenchain, Valerie Bioconductor 3.7 is released May 1, 2018

[Bioc-devel] The following bioconductor packages have duplicate commits

2 msgs May 1

Justin Silverman The following bioconductor packages have duplicate commits May 1, 2018

[Bioc-devel] The following bioconductor packages have duplicate commits

1 msg May 1

Turaga, Nitesh The following bioconductor packages have duplicate commits May 1, 2018

[Bioc-devel] The following bioconductor packages have duplicate commits

1 msg May 1

Turaga, Nitesh The following bioconductor packages have duplicate commits May 1, 2018

[Bioc-devel] push access to adaptest

2 msgs May 1

Obenchain, Valerie push access to adaptest May 1, 2018

Nima Hejazi push access to adaptest May 1, 2018

[Bioc-devel] Web App for SSH keys

1 msg May 1

Obenchain, Valerie Web App for SSH keys May 1, 2018

[Bioc-devel] Need some help to submit a R package.

2 msgs May 1

Pijush Das Need some help to submit a R package. Apr 30, 2018

Martin Morgan Need some help to submit a R package. May 1, 2018

Bioc-devel May 2018