Warning in .seqlengths_TwoBitFile(x) : mustOpen: Can't open /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit to read: No such file or directory Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 (windows). Any advice? - Paul
[Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
2 messages · Paul Shannon, Hervé Pagès
Hi Paul, After a long hunt, the software package causing these daily reinstallations of BSgenome.Hsapiens.UCSC.hg38 has been identified and his maintainer contacted. Sorry for the inconvenience this has caused so far. H.
On 6/24/19 12:31, Paul Shannon wrote:
Warning in .seqlengths_TwoBitFile(x) : mustOpen:
Can't open /home/biocbuild/bbs-3.9-bioc/R/library/BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit
to read: No such file or directory
Timing stopped at: 0.176 0 0.175 Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed
I get these errors almost every day - today on malbec2 (ubuntu) and tokay2 (windows).
Any advice?
- Paul
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319