Bioc-devel June 2019

[Bioc-devel] Problem downloading files with GenomicDataCommons

2 msgs Jun 30

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Koustav Pal Problem downloading files with GenomicDataCommons Jun 30, 2019

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Sean Davis Problem downloading files with GenomicDataCommons Jun 30, 2019

[Bioc-devel] Biconductor Git Credentials

1 msg Jun 27

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Turaga, Nitesh Biconductor Git Credentials Jun 27, 2019

[Bioc-devel] Biconductor Git Credentials

1 msg Jun 27

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Federico, Anthony, Nicholas Biconductor Git Credentials Jun 27, 2019

[Bioc-devel] where is 3.9 version?

2 msgs Jun 26

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lejeczek where is 3.9 version? Jun 26, 2019

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Martin Morgan where is 3.9 version? Jun 26, 2019

[Bioc-devel] package test failing due to CSAW

2 msgs Jun 25

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Vivek Bhardwaj package test failing due to CSAW Jun 25, 2019

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Aaron Lun package test failing due to CSAW Jun 25, 2019

[Bioc-devel] SBGNview package build error: data package not available. (SBGNview.data not in build/check results)

4 msgs Jun 25

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dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 23, 2019

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Shepherd, Lori SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019

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Hervé Pagès SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019

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dong xiaoxi SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Jun 25, 2019

[Bioc-devel] Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation

2 msgs Jun 25

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Lucas A. Salas Diaz Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Jun 24, 2019

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Shepherd, Lori Error No internet connection using 'localHub=TRUE' during FlowSorted.CordBloodCombined.450k package installation Jun 25, 2019

[Bioc-devel] Fwd: banocc problems reported in the Multiple platform build/check report for BioC 3.9

2 msgs Jun 25

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George Weingart banocc problems reported in the Multiple platform build/check report for BioC 3.9 Jun 24, 2019

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Vincent Carey banocc problems reported in the Multiple platform build/check report for BioC 3.9 Jun 25, 2019

[Bioc-devel] CHECK ERROR in tokay1 for BioC 3.10

3 msgs Jun 24

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Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019

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Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019

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Hervé Pagès CHECK ERROR in tokay1 for BioC 3.10 Jun 24, 2019

[Bioc-devel] No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit

2 msgs Jun 24

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Paul Shannon No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Jun 24, 2019

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Hervé Pagès No such file or directory: BSgenome.Hsapiens.UCSC.hg38/extdata/single_sequences.2bit Jun 24, 2019

[Bioc-devel] LaTeX errors when creating PDF version [tokay1]

1 msg Jun 24

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Benjamin Tremblay LaTeX errors when creating PDF version [tokay1] Jun 24, 2019

[Bioc-devel] how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)

1 msg Jun 18

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Dario Strbenac how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Jun 18, 2019

[Bioc-devel] Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed

1 msg Jun 18

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Paul Shannon Error in .seqlengths_TwoBitFile(x) : UCSC library operation failed Jun 18, 2019

[Bioc-devel] Error for voom() in limma package

3 msgs Jun 18

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Lan Huong Nguyen Error for voom() in limma package Jun 18, 2019

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James W. MacDonald Error for voom() in limma package Jun 18, 2019

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Gordon K Smyth Error for voom() in limma package Jun 18, 2019

[Bioc-devel] help with accessing CRISPRseek

1 msg Jun 18

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Zhu, Lihua (Julie) help with accessing CRISPRseek Jun 18, 2019

[Bioc-devel] help with accessing CRISPRseek

1 msg Jun 18

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Zhu, Lihua (Julie) help with accessing CRISPRseek Jun 18, 2019

[Bioc-devel] failing package TimeSeriesExperiment

1 msg Jun 17

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Lan Huong Nguyen failing package TimeSeriesExperiment Jun 17, 2019

[Bioc-devel] Linking packages in man pages

5 msgs Jun 17

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Sidharth Jain Linking packages in man pages Jun 17, 2019

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Martin Morgan Linking packages in man pages Jun 17, 2019

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Sidharth Jain Linking packages in man pages Jun 17, 2019

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Martin Morgan Linking packages in man pages Jun 17, 2019

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Sidharth Jain Linking packages in man pages Jun 17, 2019

[Bioc-devel] get_dcf_info failed and build intervals

7 msgs Jun 14

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Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019

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Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019

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Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019

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Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019

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Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019

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Hervé Pagès get_dcf_info failed and build intervals Jun 14, 2019

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Shraddha Pai get_dcf_info failed and build intervals Jun 14, 2019

[Bioc-devel] updating package

2 msgs Jun 14

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ostrov@i m@iii@g oii mskcc@org updating package Jun 14, 2019

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Turaga, Nitesh updating package Jun 14, 2019

[Bioc-devel] CHECK ERROR in tokay1 for BioC 3.10

3 msgs Jun 14

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Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 13, 2019

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Shepherd, Lori CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019

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Jianhong Ou, Ph.D. CHECK ERROR in tokay1 for BioC 3.10 Jun 14, 2019

[Bioc-devel] scRNAseq upgrade: give us your single-cell data!

1 msg Jun 14

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Aaron Lun scRNAseq upgrade: give us your single-cell data! Jun 14, 2019

[Bioc-devel] Github repo with multiple BioC packages

3 msgs Jun 13

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Shraddha Pai Github repo with multiple BioC packages Jun 13, 2019

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Turaga, Nitesh Github repo with multiple BioC packages Jun 13, 2019

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Shraddha Pai Github repo with multiple BioC packages Jun 13, 2019

[Bioc-devel] normalize_names_replacement_value error with colnames<- on SummarizedExperiment

3 msgs Jun 12

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Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019

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Vincent Carey normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019

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Hervé Pagès normalize_names_replacement_value error with colnames<- on SummarizedExperiment Jun 12, 2019

[Bioc-devel] package that will not build under Windows with Rtools35 (but works with Rtools40)

3 msgs Jun 12

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Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 4, 2019

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Hervé Pagès package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 11, 2019

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Ramon Diaz-Uriarte package that will not build under Windows with Rtools35 (but works with Rtools40) Jun 12, 2019

[Bioc-devel] error regarding splitAsList from IRanges packages

2 msgs Jun 11

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Felix Ernst error regarding splitAsList from IRanges packages Jun 7, 2019

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Hervé Pagès error regarding splitAsList from IRanges packages Jun 11, 2019

[Bioc-devel] new error with saved HDF5SummarizedExperiment

2 msgs Jun 11

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Vincent Carey new error with saved HDF5SummarizedExperiment Jun 7, 2019

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Hervé Pagès new error with saved HDF5SummarizedExperiment Jun 11, 2019

[Bioc-devel] Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico

3 msgs Jun 11

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Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 10, 2019

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Shepherd, Lori Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 11, 2019

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Leonardo Collado Torres Event addition request: CDSB Workshop 2019 in Cuernavaca, Mexico Jun 11, 2019

[Bioc-devel] Best way to locally troubleshoot Malbec, Tokay, or Merida build errors

2 msgs Jun 11

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Odom, Gabriel J Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Jun 11, 2019

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Martin Morgan Best way to locally troubleshoot Malbec, Tokay, or Merida build errors Jun 11, 2019

[Bioc-devel] Write access to scRNAseq

2 msgs Jun 10

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Davide Risso Write access to scRNAseq Jun 10, 2019

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Shepherd, Lori Write access to scRNAseq Jun 10, 2019

[Bioc-devel] verification on configuration

3 msgs Jun 10

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Nicolas Descostes verification on configuration Jun 7, 2019

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Shepherd, Lori verification on configuration Jun 7, 2019

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Nicolas Descostes verification on configuration Jun 10, 2019

[Bioc-devel] package submission question

3 msgs Jun 9

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Lily Wang package submission question Jun 9, 2019

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Shepherd, Lori package submission question Jun 9, 2019

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Lily Wang package submission question Jun 9, 2019

[Bioc-devel] Bioconductor package review

2 msgs Jun 9

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Lluís Revilla Bioconductor package review Jun 9, 2019

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Martin Morgan Bioconductor package review Jun 9, 2019

[Bioc-devel] BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun

2 msgs Jun 7

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Carmen M. Livi BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun Jun 7, 2019

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Shepherd, Lori BioC 3.10 build report shapshot is stacked on Tuesday 04 Jun Jun 7, 2019

[Bioc-devel] List of Deprecated Packages Bioc 3.10

1 msg Jun 7

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Shepherd, Lori List of Deprecated Packages Bioc 3.10 Jun 7, 2019

[Bioc-devel] My address is not associated with a maintainer.

2 msgs Jun 6

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Damian Szklarczyk My address is not associated with a maintainer. Jun 6, 2019

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Turaga, Nitesh My address is not associated with a maintainer. Jun 6, 2019

[Bioc-devel] Possible need for a GenomicIntersection package

2 msgs Jun 4

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Éric Fournier Possible need for a GenomicIntersection package Jun 4, 2019

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Koustav Pal Possible need for a GenomicIntersection package Jun 4, 2019