[Bioc-devel] Maintenance of MetaNeighbor package

Hi Stephan,

First, I?d like you to cc Dr. Jesse Gillis and also Manthan so we know 
that everyone is in agreement.

I can help you with the permissions on the Bioconductor repo. Before 
you get permissions you will only be able to fetch using the HTTP 
protocol, i.e

git remote set-url upstream 
https://git.bioconductor.org/packages/MetaNeighbor

git fetch ?all

Once you get the permissions you can modify the remote to use the SSH 
protocol instead.

Best,

Nitesh

On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer at gmail.com 
<mailto:stephischer at gmail.com>> wrote:

Hi,

My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis
and I'm currently maintaining the internal version of the MetaNeighbor
package. The Bioconductor version of the package was previously
maintained by Manthan Shah, who left the lab about a year ago. I would
like to take over the maintenance of the MetaNeighbor package on
Bioconductor and sync it with our internal version. Here is what I would
like to do:

?* Change of Github repository: Manthan hosted his own version of
???MetaNeighbor on a personal Github to sync with Bioconductor. I would
???rather use the Gillis lab Github instead. If I understand correctly,
???this should not be too much of an issue, since the two repositories
???have a shared history (Manthan forked the Gillis lab repo).
?* Change of permission: I set the bioconductor URL upstream of the
???Gillis lab repo, but when I try to fetch, I get a warning that I
???don't have the right permissions. At a glance I could not find how
???the permission system works. Would it be possible to update
???permissions so that I (and maybe other lab members) can access the
???Bioconductor repo?

Thanks for your help!

Best,

Stephan


[[alternative HTML version deleted]]

Hi Jesse, Manthan, Nitesh,

I wrote an e-mail earlier this week to Bioconductor support to take over maintenance of the MetaNeighbor package. Nitesh nicely offered to help me with the task, but would like to make sure that everyone agrees first. Can you please briefly confirm the change by answering this email?

Thanks everyone,

Best,

Stephan

On 03/09/2020 15:45, Nitesh Turaga wrote:

Hi Stephan,

First, I?d like you to cc Dr. Jesse Gillis and also Manthan so we know that everyone is in agreement.

I can help you with the permissions on the Bioconductor repo. Before you get permissions you will only be able to fetch using the HTTP protocol, i.e

git remote set-url upstream https://git.bioconductor.org/packages/MetaNeighbor

git fetch ?all

Once you get the permissions you can modify the remote to use the SSH protocol instead.

Best,

Nitesh

On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer at gmail.com> wrote:

Hi,

My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis
and I'm currently maintaining the internal version of the MetaNeighbor
package. The Bioconductor version of the package was previously
maintained by Manthan Shah, who left the lab about a year ago. I would
like to take over the maintenance of the MetaNeighbor package on
Bioconductor and sync it with our internal version. Here is what I would
like to do:

 * Change of Github repository: Manthan hosted his own version of
   MetaNeighbor on a personal Github to sync with Bioconductor. I would
   rather use the Gillis lab Github instead. If I understand correctly,
   this should not be too much of an issue, since the two repositories
   have a shared history (Manthan forked the Gillis lab repo).
 * Change of permission: I set the bioconductor URL upstream of the
   Gillis lab repo, but when I try to fetch, I get a warning that I
   don't have the right permissions. At a glance I could not find how
   the permission system works. Would it be possible to update
   permissions so that I (and maybe other lab members) can access the
   Bioconductor repo?

Thanks for your help!

Best,

Stephan


[[alternative HTML version deleted]]

Hi Nitesh,



That is confirmed for both me and Manthan (who was a computational

science developer in my lab).



Cheers,



Jesse



On Thu, Sep 3, 2020 at 10:00 AM Stephan Fischer <stephischer at gmail.com>
wrote:

Hi Jesse, Manthan, Nitesh,

I wrote an e-mail earlier this week to Bioconductor support to take over

maintenance of the MetaNeighbor package. Nitesh nicely offered to help me
with the task, but would like to make sure that everyone agrees first. Can
you please briefly confirm the change by answering this email?

Thanks everyone,

Best,

Stephan

On 03/09/2020 15:45, Nitesh Turaga wrote:

Hi Stephan,

First, I?d like you to cc Dr. Jesse Gillis and also Manthan so we know

that everyone is in agreement.

I can help you with the permissions on the Bioconductor repo. Before you

get permissions you will only be able to fetch using the HTTP protocol, i.e

git remote set-url upstream

https://git.bioconductor.org/packages/MetaNeighbor

git fetch ?all

Once you get the permissions you can modify the remote to use the SSH

protocol instead.

Best,

Nitesh

On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer at gmail.com>

wrote:

Hi,

My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis

and I'm currently maintaining the internal version of the MetaNeighbor

package. The Bioconductor version of the package was previously

maintained by Manthan Shah, who left the lab about a year ago. I would

like to take over the maintenance of the MetaNeighbor package on

Bioconductor and sync it with our internal version. Here is what I would

like to do:

 * Change of Github repository: Manthan hosted his own version of

   MetaNeighbor on a personal Github to sync with Bioconductor. I would

   rather use the Gillis lab Github instead. If I understand correctly,

   this should not be too much of an issue, since the two repositories

   have a shared history (Manthan forked the Gillis lab repo).

 * Change of permission: I set the bioconductor URL upstream of the

   Gillis lab repo, but when I try to fetch, I get a warning that I

   don't have the right permissions. At a glance I could not find how

   the permission system works. Would it be possible to update

   permissions so that I (and maybe other lab members) can access the

   Bioconductor repo?

Thanks for your help!

Best,

Stephan

[[alternative HTML version deleted]]

Bioc-devel at r-project.org mailing list

--

On Sep 3, 2020, at 10:47 PM, Manthan Shah <manthanshah27.92 at gmail.com> wrote:

Hi Nitesh,

I agree Stephan should have the developer rights required to make changes to the package. Please let me know if there are any actions required from my side.

Best,
Manthan

On Thu, Sep 3, 2020 at 9:10 PM Jesse Gillis <jesse.gillis at gmail.com <mailto:jesse.gillis at gmail.com>> wrote:
Hi Nitesh,



That is confirmed for both me and Manthan (who was a computational

science developer in my lab).



Cheers,



Jesse



On Thu, Sep 3, 2020 at 10:00 AM Stephan Fischer <stephischer at gmail.com <mailto:stephischer at gmail.com>> wrote:

Hi Jesse, Manthan, Nitesh,

I wrote an e-mail earlier this week to Bioconductor support to take over maintenance of the MetaNeighbor package. Nitesh nicely offered to help me with the task, but would like to make sure that everyone agrees first. Can you please briefly confirm the change by answering this email?

Thanks everyone,

Best,

Stephan

On 03/09/2020 15:45, Nitesh Turaga wrote:

Hi Stephan,

First, I?d like you to cc Dr. Jesse Gillis and also Manthan so we know that everyone is in agreement.

I can help you with the permissions on the Bioconductor repo. Before you get permissions you will only be able to fetch using the HTTP protocol, i.e

git remote set-url upstream https://git.bioconductor.org/packages/MetaNeighbor <https://git.bioconductor.org/packages/MetaNeighbor>

git fetch ?all

Once you get the permissions you can modify the remote to use the SSH protocol instead.

Best,

Nitesh

On Aug 31, 2020, at 3:49 AM, Stephan Fischer <stephischer at gmail.com <mailto:stephischer at gmail.com>> wrote:

Hi,

My name is Stephan Fischer, I'm a postdoc at CSHL with Dr Jesse Gillis

and I'm currently maintaining the internal version of the MetaNeighbor

package. The Bioconductor version of the package was previously

maintained by Manthan Shah, who left the lab about a year ago. I would

like to take over the maintenance of the MetaNeighbor package on

Bioconductor and sync it with our internal version. Here is what I would

like to do:

 * Change of Github repository: Manthan hosted his own version of

   MetaNeighbor on a personal Github to sync with Bioconductor. I would

   rather use the Gillis lab Github instead. If I understand correctly,

   this should not be too much of an issue, since the two repositories

   have a shared history (Manthan forked the Gillis lab repo).

 * Change of permission: I set the bioconductor URL upstream of the

   Gillis lab repo, but when I try to fetch, I get a warning that I

   don't have the right permissions. At a glance I could not find how

   the permission system works. Would it be possible to update

   permissions so that I (and maybe other lab members) can access the

   Bioconductor repo?

Thanks for your help!

Best,

Stephan

[[alternative HTML version deleted]]

Bioc-devel at r-project.org <mailto:Bioc-devel at r-project.org> mailing list

-- 
Regards,
Manthan Shah