Dear developers, I want to submit a package to bioconductor. Using the latest R-devel version (02/23/12), I get a warning for uncompressed data (rda files) attached to the package, when I apply "R CMD check". If I use "xz" compression, as it is recommended, I get another warning: "Warning: package needs dependence on R (>= 2.10)". Is there any possibility to overcome this problem, since packages submitted to bioconductor are not allowed to have warning messages in the check report? Best wishes, Benedikt
[Bioc-devel] data compression
3 messages · zacher at lmb.uni-muenchen.de, Nicolas Delhomme, Pedro Madrigal
I'm not a 100% sure, but I suppose that adding R(>= 2.10) in your package DESCRIPTION file, in the Depends field should resolve it. Cheers, Nico --------------------------------------------------------------- Nicolas Delhomme Genome Biology Computational Support European Molecular Biology Laboratory Tel: +49 6221 387 8310 Email: nicolas.delhomme at embl.de Meyerhofstrasse 1 - Postfach 10.2209 69102 Heidelberg, Germany ---------------------------------------------------------------
On 24 Feb 2012, at 12:29, <zacher at lmb.uni-muenchen.de> <zacher at lmb.uni-muenchen.de> wrote:
Dear developers, I want to submit a package to bioconductor. Using the latest R-devel version (02/23/12), I get a warning for uncompressed data (rda files) attached to the package, when I apply "R CMD check". If I use "xz" compression, as it is recommended, I get another warning: "Warning: package needs dependence on R (>= 2.10)". Is there any possibility to overcome this problem, since packages submitted to bioconductor are not allowed to have warning messages in the check report? Best wishes, Benedikt
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Hi Benedikt, I think in the DESCRIPTION file of your package you should write "Depends: R(>= 2.10.0)". (Page 12 of 'Writing R Extensions' manual) Best,Pedro
On 02/24/2012 12:29 PM, zacher at lmb.uni-muenchen.de wrote:
Dear developers, I want to submit a package to bioconductor. Using the latest R-devel version (02/23/12), I get a warning for uncompressed data (rda files) attached to the package, when I apply "R CMD check". If I use "xz" compression, as it is recommended, I get another warning: "Warning: package needs dependence on R (>= 2.10)". Is there any possibility to overcome this problem, since packages submitted to bioconductor are not allowed to have warning messages in the check report? Best wishes, Benedikt
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