Dear all, I have recently been notified of errors during the build of ncRNAtools in the devel branch. Since the errors are not showing up in release, I tried to set up a correct devel environment to check the problems. I first downloaded R 4.1.0 from https://mac.r-project.org I then set up BioC 3.13 with the following: if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install(version = "devel") I then checked if the environment was valid with BiocManager::valid() which returned TRUE. However, when attempting to install ncRNAtools, I got the following:
BiocManager::install("ncRNAtools")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.13 (BiocManager 1.30.12), R 4.1.0 alpha (2021-04-29 r80247)
Installing package(s) 'ncRNAtools'
Warning message:
package ?ncRNAtools? is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Does anybody have any advice on how to proceed to manage to install ncRNAtools in a valid Bioc devel environment? I am leaving below the output of sessionInfo()
R version 4.1.0 alpha (2021-04-29 r80247)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale:[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] BiocManager_1.30.12 compiler_4.1.0 tools_4.1.0
Thanks a lot in advance!
Best wishes,
Lara
Lara Selles
lara.selles12 at imperial.ac.uk