Dear Bioconductor team, I'm checking the 'checkResults' of a recently accepted package 'SBGNview'. https://bioconductor.org/checkResults/3.10/bioc-LATEST/ The result shows error because the data package it depends on ('SBGNview.data') is 'not available'. Also 'SBGNview.data' is not in the 'checkResults' page. Can I do something to fix this? Thanks! Best,
[Bioc-devel] SBGNview package build error: data package not available. (SBGNview.data not in build/check results)
4 messages · dong xiaoxi, Shepherd, Lori, Hervé Pagès
1 day later
Data packages are built Sunday, Tuesday, and Thursday. It can sometimes take a full week for the experiment package to build and the software package to pick up on it. Please be patient and if it still can't find it by next week please let us know and we will investigate further. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of dong xiaoxi <dfdongxiaoxi at gmail.com>
Sent: Sunday, June 23, 2019 1:00:55 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] SBGNview package build error: data package not available. (SBGNview.data not in build/check results)
Sent: Sunday, June 23, 2019 1:00:55 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] SBGNview package build error: data package not available. (SBGNview.data not in build/check results)
Dear Bioconductor team, I'm checking the 'checkResults' of a recently accepted package 'SBGNview'. https://bioconductor.org/checkResults/3.10/bioc-LATEST/ The result shows error because the data package it depends on ('SBGNview.data') is 'not available'. Also 'SBGNview.data' is not in the 'checkResults' page. Can I do something to fix this? Thanks! Best, [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
Also please note that data experiment packages are on a different report (and SBGNview.data is in it): https://bioconductor.org/checkResults/3.10/data-experiment-LATEST/ As Lori said it can take a few build cycles before SBGNview.data gets installed on all the build machines. H.
On 6/25/19 05:14, Shepherd, Lori wrote:
Data packages are built Sunday, Tuesday, and Thursday. It can sometimes take a full week for the experiment package to build and the software package to pick up on it. Please be patient and if it still can't find it by next week please let us know and we will investigate further. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of dong xiaoxi <dfdongxiaoxi at gmail.com> Sent: Sunday, June 23, 2019 1:00:55 PM To: bioc-devel at r-project.org Subject: [Bioc-devel] SBGNview package build error: data package not available. (SBGNview.data not in build/check results) Dear Bioconductor team, I'm checking the 'checkResults' of a recently accepted package 'SBGNview'. https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=INvtI5jnfX7jcxOXjHqxTfODGozRG9jkW8yjr_R3ONQ&e= The result shows error because the data package it depends on ('SBGNview.data') is 'not available'. Also 'SBGNview.data' is not in the 'checkResults' page. Can I do something to fix this? Thanks! Best, [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=ckNz41rDHG57AZ7s8LneA_-6u5b4ngofPBHllVUOYQE&e= This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=ckNz41rDHG57AZ7s8LneA_-6u5b4ngofPBHllVUOYQE&e=
Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
Got it! Thank you all for the information!
On Tue, Jun 25, 2019 at 10:24 AM Pages, Herve <hpages at fredhutch.org> wrote:
Also please note that data experiment packages are on a different report (and SBGNview.data is in it): https://bioconductor.org/checkResults/3.10/data-experiment-LATEST/ As Lori said it can take a few build cycles before SBGNview.data gets installed on all the build machines. H. On 6/25/19 05:14, Shepherd, Lori wrote:
Data packages are built Sunday, Tuesday, and Thursday. It can sometimes
take a full week for the experiment package to build and the software package to pick up on it. Please be patient and if it still can't find it by next week please let us know and we will investigate further.
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of dong
xiaoxi <dfdongxiaoxi at gmail.com>
Sent: Sunday, June 23, 2019 1:00:55 PM To: bioc-devel at r-project.org Subject: [Bioc-devel] SBGNview package build error: data package not
available. (SBGNview.data not in build/check results)
Dear Bioconductor team, I'm checking the 'checkResults' of a recently accepted package
'SBGNview'.
https://urldefense.proofpoint.com/v2/url?u=https-3A__bioconductor.org_checkResults_3.10_bioc-2DLATEST_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=INvtI5jnfX7jcxOXjHqxTfODGozRG9jkW8yjr_R3ONQ&e=
The result shows error because the data package it depends on
('SBGNview.data') is 'not available'. Also 'SBGNview.data' is not in the
'checkResults' page. Can I do something to fix this? Thanks!
Best,
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=ckNz41rDHG57AZ7s8LneA_-6u5b4ngofPBHllVUOYQE&e=
This email message may contain legally privileged and/or confidential
information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
[[alternative HTML version deleted]]
_______________________________________________ Bioc-devel at r-project.org mailing list
https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-6k1qazDmtdnPp75PIf_bEXdVRIZd3tWtvhHKDXkdDo&s=ckNz41rDHG57AZ7s8LneA_-6u5b4ngofPBHllVUOYQE&e=
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319