Hello, I?m working with cummeRbund in R 3.1.1 and I?m trying to get a different point size for my csVolcano plot. I?ve tried two approaches an neither see to work. after loading library and the data as library(cummeRbund) cuff <- readCufflinks(?diff_out?) 1)use the mapping setting for the csVoclano function v <- csVolcano(genes(cuff), ?EP?, ?PC?, showSignificant=TRUE, alpha=0.05, mapping=aes(size=5)) When I view this the point size stays a the default settings. 2) Alter the ggplot2 information after creating the plot t <- v + geom_point(aes(size = 2)) This produces an error saying that ?geom_point requires the following missing aesthetics: x, y if I provide those labels the points still don?t change t <- v + geom_point(aes(x=log10 y=log2 size =2)) Using method two with csScatter works great and the points change size. What am I missing? Cheers Ian
[Bioc-devel] cummeRbund volcano plot different point size
2 messages · Ian Misner, Leonardo Collado Torres
1 day later
I believe that this question is better suited for the support site: https://support.bioconductor.org/
On Thu, Dec 4, 2014 at 2:13 PM, Ian Misner <imisner at umd.edu> wrote:
Hello, I?m working with cummeRbund in R 3.1.1 and I?m trying to get a different point size for my csVolcano plot. I?ve tried two approaches an neither see to work. after loading library and the data as library(cummeRbund) cuff <- readCufflinks(?diff_out?) 1)use the mapping setting for the csVoclano function v <- csVolcano(genes(cuff), ?EP?, ?PC?, showSignificant=TRUE, alpha=0.05, mapping=aes(size=5)) When I view this the point size stays a the default settings. 2) Alter the ggplot2 information after creating the plot t <- v + geom_point(aes(size = 2)) This produces an error saying that ?geom_point requires the following missing aesthetics: x, y if I provide those labels the points still don?t change t <- v + geom_point(aes(x=log10 y=log2 size =2)) Using method two with csScatter works great and the points change size. What am I missing? Cheers Ian
_______________________________________________ Bioc-devel at r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel