Hi all, I am working on MungeSumstats(https://github.com/neurogenomics/MungeSumstats) which is being considered for addition to Bioconductor (issue: https://github.com/Bioconductor/Contributions/issues/2043). To avoid importing large reference genomes in my package, I recently put them in as suggests and made a custom check to ensure they are installed. However, I am now getting an odd warning on the Bioconductor windows machine: * checking whether package 'MungeSumstats' can be installed ... WARNING Found the following significant warnings: Warning: no function found corresponding to methods exports from 'S4Vectors' for: 'combineRows' Note, I don't get any warnings locally or on the other two machines. Has anyone seen this before? I have S4Vectors down in my suggests as it is used in the reference genome packages (for example, see SNPlocs.Hsapiens.dbSNP144.GRCh38: https://bioconductor.org/packages/release/data/annotation/html/SNPlocs.Hsapiens.dbSNP144.GRCh38.html) but I'm not sure how it even relates to combineRows? Any help would be massively appreciated! Kind regards, Alan.
[Bioc-devel] R CMD CHECK warning -
2 messages · alan murphy, Vincent Carey
I'd suggest that this topic be dealt with on the associated contribution issue. Please report sessionInfo() when discussing warnings. I will now make some comments on the contribution issue as I am trying to follow up your concerns. Thanks
On Tue, Apr 27, 2021 at 3:07 AM alan murphy <alanmurph94 at hotmail.com> wrote:
Hi all, I am working on MungeSumstats( https://github.com/neurogenomics/MungeSumstats) which is being considered for addition to Bioconductor (issue: https://github.com/Bioconductor/Contributions/issues/2043). To avoid importing large reference genomes in my package, I recently put them in as suggests and made a custom check to ensure they are installed. However, I am now getting an odd warning on the Bioconductor windows machine: * checking whether package 'MungeSumstats' can be installed ... WARNING Found the following significant warnings: Warning: no function found corresponding to methods exports from 'S4Vectors' for: 'combineRows' Note, I don't get any warnings locally or on the other two machines. Has anyone seen this before? I have S4Vectors down in my suggests as it is used in the reference genome packages (for example, see SNPlocs.Hsapiens.dbSNP144.GRCh38: https://bioconductor.org/packages/release/data/annotation/html/SNPlocs.Hsapiens.dbSNP144.GRCh38.html) but I'm not sure how it even relates to combineRows? Any help would be massively appreciated! Kind regards, Alan. [[alternative HTML version deleted]]
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