Hello, I am trying to update the package seq2pathway.data, and I'm getting a message that says "built version is LOWER than in internal repository". Does anyone know how I can correct this error with my version numbers? Trying to commit having directly bumped the version number fails. It appears that the release version ( https://bioconductor.org/packages/3.13/data/experiment/html/seq2pathway.data.html) is 1.23.0. However, the version that I'm working on (and that bioconductor accepts when committing changes) is 1.18.0 (from https://www.bioconductor.org/checkResults/3.13/data-experiment-LATEST/seq2pathway.data/ ). Any help would be greatly appreciated. Thank you, Arjun Kinstlick
[Bioc-devel] Bioconductor Package Version
2 messages · AJ Kinstlick, Shepherd, Lori
At Bioconductor releases, the core team increases the version numbers of all packages. It is important to remember to git pull upstream master? after each Bioconductor release before making any further changes to package and to resolve all DESCRIPTION file merge conflicts appropriately using the Bioconductor version number or higher. At release we bumped the release 3.12 version of the package to 1.22.0 and devel version of the package to 1.23.0 which is reflected in the landing page and the built version of the package. Somewhere along the way you had a merge conflict and changed the version back down to 1.18.0 in devel. This is not supposed to be possible but managed to slip through our checks. Version numbers should NEVER go down! Please try and change the version number to 1.23.1 and try to push to the master branch again. If you continue to have issues, please reach back out. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of AJ Kinstlick <akinstlick at uchicago.edu>
Sent: Monday, April 19, 2021 2:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Bioconductor Package Version
Sent: Monday, April 19, 2021 2:28 PM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Bioconductor Package Version
Hello, I am trying to update the package seq2pathway.data, and I'm getting a message that says "built version is LOWER than in internal repository". Does anyone know how I can correct this error with my version numbers? Trying to commit having directly bumped the version number fails. It appears that the release version ( https://secure-web.cisco.com/1LH1a9lQCskb-SIBRlxp8f9spU0u2LNHud5_T6RYShbRqpMlBTwliMU78f7NlHz79tyzG2n6EWTNid7Lqy5fzQJGv81OhraorQ0DD-LsvscJaix2k19oDjQmvfi9bjcWp7nTl3QGFIfqsQbr0Ahk0xLjYmM6NtRJ1tXPa_Y0MbSE7XUBPCPVQShfnNYm16q0jiVuGjBXdO9iICW5t2TwrBXU4AYB2aaozpemovsNZpHsQ1ZhBWwJuI4H5galFMNzpVbmnrwRlEopQ8AcVtVGjJGIP_5selfIXdAYJtJEvu06MthoNbQ2xTI4yNS0MLbwCqiHh-W0Oc6k4E5ST0T8QRA/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.13%2Fdata%2Fexperiment%2Fhtml%2Fseq2pathway.data.html) is 1.23.0. However, the version that I'm working on (and that bioconductor accepts when committing changes) is 1.18.0 (from https://secure-web.cisco.com/1rIxCTN33O7HYcVU4fgfdpV6I4i9FmPYptspz4hPWUIyNVgawJrqd3T23nAxsOMNUCeGrNGgBxDnOIsgwXBPVXC44ds9TEmRKleV_r0yNPFkYdQpRMaMRP38sK1cRmG7WyYFX3udQykO6JAcmZxk-1md8g2bMBSklyLrLfm4lYFkVo0FcDZCtQFEkGL_74upqfBlrIJI1TXL2V-UipohLdHJOnHZ3QSMPBOZ5UHLIoW_Q2NA2C6M8U0qHmR7jHXyaH_t8EBIT35xPizQhkbmjnPf1nWWgpelGg0bXN9odWbxXMN37PwnxtFYXVJsC9qqXsBp6anVj0XAoTCR-KubbTQ/https%3A%2F%2Fwww.bioconductor.org%2FcheckResults%2F3.13%2Fdata-experiment-LATEST%2Fseq2pathway.data%2F ). Any help would be greatly appreciated. Thank you, Arjun Kinstlick [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://secure-web.cisco.com/1s8KFD9r1p8p5NsJBkNYQOhsQ98vGWbY6DnPTuke4g2XWrM7cPh3X_t4WeeIXf_qyKwQ6Gq-Uonn1IyszoxcGfZ6W9GrbQK-4qs0kFdnXEsfO4n-UABuQfINcYYXy-GOjKbNagE1FZ84Ne7ny9ArHRhfHyEkDZRDQER6BvO7lqzeBbkyzF7CfzLhji3Kypl8qx81Zd2bb2KwGO3nIuuBVsndFQBHoMgKfF8hvwAWK-KUOopd-Czfk7C5soniFQ3zE6I722-SeL_gcveKi5FU1iqsXwXfnExkXJgqUmk3UAY2NTLEI9WEtt1PMFEZURK3i-aiIs3lwUvpF9BWBvpVAAQ/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.