R-devel - February 2008 - Date View

Friday, February 29, 2008 6 emails

Brian Ripley Can't interrupt R-processes in R OSX 2.6.2 Hilmar Berger ifelse drops classes Martin Maechler Warnings generated by log2()/log10() are really large/t Atte Tenkanen Can't interrupt R-processes in R OSX 2.6.2 Berwin A Turlach patch for random.c Andrew Runnalls CXXR: Refactoring the R interpreter into C++

Thursday, February 28, 2008 8 emails

Jim Regetz Problems initializing an extended S4 class Brian Ripley Warnings generated by log2()/log10() are really large/takes a long time to display Nicholas Lewin-Koh Unix-like touch to update modification timestamp of file? Roger D. Peng looking for R_approx in 2.6 Greg Snow mean (PR#10864) Peter Kharchenko looking for R_approx in 2.6 Brian Ripley Bug in help(). (PR#10859) paulponcet at yahoo.fr mean (PR#10864)

Wednesday, February 27, 2008 15 emails

Gabor Grothendieck Unix-like touch to update modification timestamp of file? Rolf Turner Bug in help(). (PR#10859) Henrik Bengtsson Unix-like touch to update modification timestamp of file? Gabor Grothendieck Unix-like touch to update modification timestamp of file? Earl F. Glynn Unix-like touch to update modification timestamp of file? (Ted Harding) Warnings generated by log2()/log10() are really large/t Gabor Grothendieck Warnings generated by log2()/log10() are really large/takes a long time to display Richard Pearson Warnings generated by log2()/log10() are really large/takes a long time to display Duncan Murdoch Generic Functions Duncan Murdoch dhyper, phyper (PR#10853) Henrik Bengtsson Warnings generated by log2()/log10() are really large/takes a long time to display Dominik Locher Generic Functions Brian Ripley Warnings generated by log2()/log10() are really large/takes a long time to display Martin Maechler Warnings generated by log2()/log10() are really large/takes a long time to display tdye at hawaii.edu dhyper, phyper (PR#10853)

Tuesday, February 26, 2008 18 emails

Matthias Kohl d_fontdb.d, g_her_glyph.d Brian Ripley d_fontdb.d, g_her_glyph.d Henrik Bengtsson Warnings generated by log2()/log10() are really large/takes a long time to display Henrik Bengtsson Unix-like touch to update modification timestamp of file? Matthias Kohl d_fontdb.d, g_her_glyph.d Ben Bolker tiny typo (sort of) in plot.c anuar at uchicago.edu MacOSX R.app do not save history (PR#10850) Oleg Sklyar error loading library Vadim Ogranovich error loading library Hadley Wickham Aliasing a function Martin Maechler r44608 fails make check-all in scatter.smooth example Brian Ripley New version of X11, png and jpeg Michael Lawrence New version of X11, png and jpeg Michael Lawrence New version of X11, png and jpeg Brian Ripley New version of X11, png and jpeg Roger D. Peng New version of X11, png and jpeg Brian Ripley New version of X11, png and jpeg Thibaut Jombart Standard method for S4 object

Monday, February 25, 2008 23 emails

Brian Ripley New version of X11, png and jpeg Michael Lawrence New version of X11, png and jpeg Peter Dalgaard r44608 fails make check-all in scatter.smooth example Gavin Simpson r44608 fails make check-all in scatter.smooth example Brian Ripley Clipping using par(plt=..., xpd=FALSE) inconsistencies Gabor Grothendieck how to write dput-able objects Vadim Ogranovich how to write dput-able objects Brian Ripley r44608 fails make check-all in scatter.smooth example Brian Ripley New version of X11, png and jpeg Roger D. Peng New version of X11, png and jpeg Tim Hesterberg Standard method for S4 object Oleg Sklyar Standard method for S4 object Gabor Grothendieck how to write dput-able objects Gavin Simpson r44608 fails make check-all in scatter.smooth example Tim Hesterberg Standard method for S4 object Vadim Ogranovich how to write dput-able objects Oleg Sklyar Standard method for S4 object Brian Ripley New version of X11, png and jpeg Tim Hesterberg Standard method for S4 object Martin Rubi Calling R_PreserveObject from embedded R Christophe Genolini S4 : declaration of inheritance Oleg Sklyar S4 : declaration of inheritance Christophe Genolini S4 : declaration of inheritance

Sunday, February 24, 2008 9 emails

Tony Plate Aliasing a function Simon Urbanek 'Esc' crashes R in MacOX 10.5.2 (PR#10839) Paul Murrell Clipping using par(plt=..., xpd=FALSE) inconsistencies Uwe Ligges 'Esc' crashes R in MacOX 10.5.2 (PR#10839) abond at mun.ca 'Esc' crashes R in MacOX 10.5.2 (PR#10839) Christophe Genolini Standard method for S4 object Katharine Mullen Standard method for S4 object Michael Lawrence .net and R Roger Bivand R for Windows FAQ 2.8 suggestion

Saturday, February 23, 2008 14 emails

Hadley Wickham Aliasing a function Gabor Grothendieck Aliasing a function Gabor Grothendieck Aliasing a function John Fox Aliasing a function Hadley Wickham Aliasing a function Christophe Genolini Standard method for S4 object Roger Koenker print.logLik Martin Maechler print.logLik jbrzusto at fastmail.fm patch: two minor debugging-related pointer protection stack issues (PR#10832) Roger Koenker print.logLik Laurent Gautier level of mutability for the type of a SEXP Laurent Gautier Calling R_PreserveObject from embedded R Brian Ripley .net and R Yuan Jian .net and R

Friday, February 22, 2008 3 emails

Brian Ripley Clipping using par(plt=..., xpd=FALSE) inconsistencies Greg Snow Clipping using par(plt=..., xpd=FALSE) inconsistencies Martin Rubi Calling R_PreserveObject from embedded R

Thursday, February 21, 2008 9 emails

Brian Ripley level of mutability for the type of a SEXP Seth Falcon Suggestion: isLoaded() to test if a package is loaded (without loading it) tmaravin at insightful.com R CMD check for glmpath on Windows (PR#10823) Henrik Bengtsson Suggestion: isLoaded() to test if a package is loaded (without loading it) Greg Snow Assigning a sub-matrix from a data frame to a regular (PR#10822) Greg Snow Assigning a sub-matrix from a data frame to a regular matrixcauses strange behaviour (version 2.6.1) (PR#10799) Henrik Bengtsson Feedback on a colClasses() generator function in progress? Vladmir Makarov DNAcopy package output data Patrick Burns ar on a constant series

Wednesday, February 20, 2008 8 emails

asfe at di.fc.ul.pt Incorrect paste() output (PR#10801) Brian Ripley Tcl/Tk extensions Martin Morgan DNAcopy package output data Hin-Tak Leung Bug using X11 on mac osx (for jpeg or png creation) (PR#10800) Vladmir Makarov DNAcopy package output data Dan Davison allow NAs in upper tri for eigen(x,symmetric=TRUE)? jbrzusto at fastmail.fm minor bug and patch: attr(x, "names")<-y when y is a pairlist (PR#10807) Henrik Bengtsson Reference: A Legal Issues Primer for Open Source and Free Software Projects

Tuesday, February 19, 2008 10 emails

Brian Ripley Bug using X11 on mac osx (for jpeg or png creation) (PR#10800) Brian Ripley (PR#10799) Assigning a sub-matrix from a data frame to a Benilton Carvalho Bug using X11 on mac osx (for jpeg or png creation) (PR#10800) Brian Ripley Incorrect paste() output (PR#10801) Duncan Murdoch Incorrect paste() output (PR#10801) asfe at di.fc.ul.pt Incorrect paste() output (PR#10801) bonneaud at enib.fr Bug using X11 on mac osx (for jpeg or png creation) (PR#10800) david at opsi.co.za Assigning a sub-matrix from a data frame to a regular matrix causes strange behaviour (version 2.6.1) (PR#10799) Laurent Gautier level of mutability for the type of a SEXP Brian Ripley Distance Metrics using Euclidean

Monday, February 18, 2008 12 emails

Martin Morgan NAMESPACEs and S4 classes Brian Ripley Is rcompgen still recommended? Peter Dalgaard Is rcompgen still recommended? Keizer_71 Distance Metrics using Euclidean James W. MacDonald Is rcompgen still recommended? Brian Ripley Namespace and function open John Chambers NAMESPACEs and S4 classes Martin Maechler Namespace and function open Gabor Grothendieck NEWS and ChangeLog in available.packages() Martin Maechler NEWS and ChangeLog in available.packages() Hin-Tak Leung Perils of R_LIBRARY_PATH Gabor Grothendieck NEWS and ChangeLog in available.packages()

Sunday, February 17, 2008 9 emails

Bo Zhou Arithmetic bug? (found when use POSIXct) (PR#10776) Gabor Grothendieck Arithmetic bug? (found when use POSIXct) (PR#10776) bozhou1981 at hotmail.com Arithmetic bug? (found when use POSIXct) (PR#10776) Martin Morgan NAMESPACEs and S4 classes Dirk Eddelbuettel An R SPAM Filter Brian Ripley Mac OS X 2.5.1 / reg-plot.R / tr (PR#10781) hoogeebear An R SPAM Filter Duncan Murdoch Mac OS X 2.5.1 / reg-plot.R / tr (PR#10781) A.R.Runnalls at kent.ac.uk Mac OS X 2.5.1 / reg-plot.R / tr (PR#10781)

Saturday, February 16, 2008 7 emails

Brian Ripley Probable bug in "An Introduction to R" (PR#10777) Olivier Lefevre Probable bug in "An Introduction to R" (PR#10777) Ben Bolker choose incorrect for fractional and some negative integer values (PR#10766) Duncan Murdoch forcing gc() to do its work Vadim Ogranovich forcing gc() to do its work Gabor Grothendieck Arithmetic bug? (found when use POSIXct) (PR#10776) gmail at kubism.ku.dk Arithmetic bug? (found when use POSIXct) (PR#10776)

Friday, February 15, 2008 16 emails

Brian Ripley Perils of R_LIBRARY_PATH Hin-Tak Leung Perils of R_LIBRARY_PATH Vadim Ogranovich crash in library(gbm) was: Rscript temp file Jeffrey Horner R crashes with debug() Brian Ripley dir.create in 2.7.0dev (PR#10765) Jerry.Lewis at biogenidec.com choose incorrect for fractional and some negative integer values (PR#10766) dominik.locher at bondsearch.ch dir.create in 2.7.0dev (PR#10765) Vadim Ogranovich Rscript temp file Benjamin Tyner data frame with NA in names Michael Lawrence RGtk2 : Using GtkImage with GIF (PR#10757) Albert Vernon Smith Mac crash with installing packages (PR#10764) Simon Urbanek Mac crash with installing packages (PR#10764) Brian Ripley pt inaccurate when x is close to 0 (PR#9945) jerry.lewis at biogenidec.com pt inaccurate when x is close to 0 (PR#9945) Albert Vernon Smith Mac crash with installing packages (PR#10764) Markus Schmidberger Namespace and function open

Thursday, February 14, 2008 27 emails

Wednesday, February 13, 2008 28 emails

Andrew Robinson GCV in lm.ridge (MASS) (PR#10755) Erich Neuwirth Rprofile.site in Windows version Jeffrey Horner RFC for package PopCon: a popularity contest for R and packages Brian Ripley removing last piece of grid graphical output with grid.remove Kurt Hornik Perils of R_LIBRARY_PATH Deepayan Sarkar Surprising behaviour of levelplot in lattice package Deepayan Sarkar Surprising behaviour of levelplot in lattice package Paul Murrell removing last piece of grid graphical output with grid.remove Henrik Bengtsson Best way to reset random seed when using set.seed() in a function? Simon Urbanek ESC key crashes R (PR#10753) Paul Gilbert Best way to reset random seed when using set.seed() in a function? Erik Iverson removing last piece of grid graphical output with grid.remove Kasper Daniel Hansen Best way to reset random seed when using set.seed() in a function? C. E. Timothy Paine ESC key crashes R (PR#10753) Henrik Bengtsson Best way to reset random seed when using set.seed() in a function? Brian Ripley Best way to reset random seed when using set.seed() in a function? Henrik Bengtsson Best way to reset random seed when using set.seed() in a function? Wolfgang Huber Surprising behaviour of levelplot in lattice package (Ted Harding) 0.45<0.45 = TRUE (PR#10744) Oleg Sklyar assigning NULLs to elements of a list Gabor Grothendieck assigning NULLs to elements of a list Oleg Sklyar assigning NULLs to elements of a list Brian Ripley Perils of R_LIBRARY_PATH Brian Ripley 0.45<0.45 = TRUE (PR#10744) Duncan Murdoch Uninstall registry key the same for all versions (PR#10746) Barry Rowlingson 0.45<0.45 = TRUE (PR#10744) Berwin A Turlach On Section 2.5:Sub-architectures in the R Installation and Administration manual Gerhard Thallinger Uninstall registry key the same for all versions (PR#10746)

Tuesday, February 12, 2008 25 emails

Monday, February 11, 2008 3 emails

Tomasz Paweł Gajc Use xdg-open ? Brian Ripley Use xdg-open ? Tomasz Paweł Gajc Use xdg-open ?

Sunday, February 10, 2008 5 emails

Mark Kimpel help with R rendering engine Paul Murrell help with R rendering engine Duncan Murdoch print.fitdistr buglet Brian Ripley View() + "End" key on Ubuntu=segfault Peter Dalgaard View() + "End" key on Ubuntu=segfault

Saturday, February 9, 2008 11 emails

Duncan Murdoch Rprofile.site in Windows version Ben Bolker View() + "End" key on Ubuntu=segfault Erich Neuwirth Rprofile.site in Windows version Duncan Murdoch print.fitdistr buglet Enrico Rossi print.fitdistr buglet Peter Dalgaard .. printing a data frame containing a matrix (PR#10730) Michael Lawrence help with R rendering engine Peter Dalgaard Problem with fitdistr function while estimating parameters Aswad Gurjar Problem with fitdistr function while estimating parameters Peter Dalgaard bad variable names when printing a data frame containing (PR#10732) Peter Dalgaard bad variable names when printing a data frame containing a matrix (PR#10730)

Friday, February 8, 2008 6 emails

Gabor Grothendieck lm with factors for which only one level occurs Tim Hesterberg bad variable names when printing a data frame containing a matrix (PR#10730) Peter Dalgaard xspline(..., draw=FALSE) fails if there is no open device (PR#10728) Peter Dalgaard xspline(..., draw=FALSE) fails if there is no open device (PR#10727) Jari Oksanen xspline(..., draw=FALSE) fails if there is no open device (PR#10727) jing hua zhao pnorm

Thursday, February 7, 2008 11 emails

Hervé Pagès Pb with lapply() Gabor Grothendieck Choosing CRAN Mirror in Windows GUI Mark Kimpel help with R rendering engine Thomas Lumley pnorm Tim Hesterberg Sampling with unequal probabilities Dimitris Rizopoulos pnorm Brian Ripley pnorm Duncan Murdoch pnorm Martin Becker pnorm jing hua zhao pnorm Peter Dalgaard 2.6.2 RC

Wednesday, February 6, 2008 8 emails

Duncan Murdoch Building R for Windows Earl F. Glynn Building R for Windows Bill Dunlap codetools::checkUsage should ignore expression in Quote(expr) (PR#10719) Oran Johnson The standalone Rmath library and VC++ 2003 Hin-Tak Leung (PR#10696) maybe a bug in the system.time() function? Daniel Oberski R valgrind question Jeffrey J. Hallman argument order for Math2 group functions in R 2.6.x (PR#10679) jo.irisson at gmail.com Incomplete ouput with sink and split=TRUE e.g. with writeLines (PR#10713)

Tuesday, February 5, 2008 16 emails

Brian Ripley R valgrind question Tim Hesterberg Suggestions for R-intro manual (PR#10701) Paul Murrell Error in grid.text after tcltk package loaded Daniel Oberski R valgrind question Erik Iverson Error in grid.text after tcltk package loaded Peter Dalgaard Error in grid.text after tcltk package loaded Erik Iverson Error in grid.text after tcltk package loaded Ben Bolker fortune() candidate? Simon Urbanek Got *** caught segfault *** with Quantreg on Mac (PR#10699) Henrik Bengtsson Need for garbage collection after creating object Henrik Bengtsson Need for garbage collection after creating object Iago Mosqueira Need for garbage collection after creating object Yohan Chalabi garchFit (PR#10698) huangce at gmail.com Got *** caught segfault *** with Quantreg on Mac (PR#10699) Ei-ji Nakama Problem building R with Intel MKL v10 BLAS Ei-ji Nakama Problem building R with Intel MKL v10 BLAS

Monday, February 4, 2008 19 emails

scott.yonker at gmail.com garchFit (PR#10698) Michael Redmond Problem building R with Intel MKL v10 BLAS Michael Redmond Problem building R with Intel MKL v10 BLAS Jeffrey Horner R valgrind question Daniel Oberski R valgrind question Daniel Oberski R valgrind question Hin-Tak Leung (PR#10696) maybe a bug in the system.time() function? Uwe Ligges r-release Windows x86_64 Paul Gilbert r-release Windows x86_64 Hadley Wickham a != a*1 != a+0 != +a iacob at ceremade.dauphine.fr maybe a bug in the system.time() function? (PR#10696) Gabor Grothendieck a != a*1 != a+0 != +a Donald Allen strftime fails on POSIXct objects (PR#10695) Peter Dalgaard strftime fails on POSIXct objects (PR#10695) robin hankin a != a*1 != a+0 != +a donaldcallen at gmail.com strftime fails on POSIXct objects (PR#10695) Joe Bloggs gdb ari at ciet.org Error in La.svd(x, nu, nv) : error code 1 from Lapack routine 'dgesdd' (PR#10694) Martin Maechler gdb

Sunday, February 3, 2008 6 emails

Dirk Eddelbuettel gdb Joe Bloggs gdb Brian Ripley argument order for Math2 group functions in R 2.6.x (PR#10683) Dirk Eddelbuettel gdb John Fox argument order for Math2 group functions in R 2.6.x (PR#10683) John Fox argument order for Math2 group functions in R 2.6.x (PR#10683)

Saturday, February 2, 2008 5 emails

Joe Bloggs gdb Brian Ripley argument order for Math2 group functions in R 2.6.x (PR#10683) John Fox argument order for Math2 group functions in R 2.6.x (PR#10681) John Fox argument order for Math2 group functions in R 2.6.x (PR#10679) Martin Maechler bug using matplot (PR#10676)

Friday, February 1, 2008 8 emails

ben.hansen at umich.edu argument order for Math2 group functions in R 2.6.x (PR#10679) Gavin Simpson bug using matplot (PR#10676) Gavin Simpson pheno package (PR#10674) Martin Maechler pheno package (PR#10674) cori at u707.jussieu.fr bug using matplot (PR#10676) Anja.Eggert at uni-rostock.de pheno package (PR#10674) Martin Maechler Pb with lapply() Martin Maechler Pb with lapply()

R-devel February 2008