R-devel - October 2010 - Date View

Sunday, October 31, 2010 1 email

Michael Spiegel BLAS benchmarks on R 2.12.0

Saturday, October 30, 2010 1 email

John Christie IQR modification recommendation (with code!! :) )

Friday, October 29, 2010 8 emails

Hervé Pagès list2env() is broken Simon Urbanek list2env() is broken Henrik Bengtsson list2env() is broken Vitalie S. Reference Classes: Generalizing Reference Class Generator objects? Hervé Pagès list2env() is broken John Chambers Reference Classes: Generalizing Reference Class Generator objects? Michael Lawrence Scripting SVG with R Brian Ripley list2env() is broken

Thursday, October 28, 2010 20 emails

Hervé Pagès list2env() is broken Dominick Samperi must .Call C functions return SEXP? Douglas Bates must .Call C functions return SEXP? Brian Ripley make check-all error on Win 7 with 2-12-.0: vfork: Resource temporarily unavailable Andrew Piskorski must .Call C functions return SEXP? Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD Dominick Samperi must .Call C functions return SEXP? Andy Bunn make check-all error on Win 7 with 2-12-.0: vfork: Resource temporarily unavailable Michael Lawrence R-2.12.0 hangs while loading RGtk2 on FreeBSD Jon Clayden Reference Classes: Generalizing Reference Class Generator objects? Daniel Lee Reference Classes: Generalizing Reference Class Generator objects? Joris Meys Unexpected behabiour of min, tapply and POSIXct/POSIXlt classes? Carlos J. Gil Bellosta Unexpected behabiour of min, tapply and POSIXct/POSIXlt classes? Jon Clayden Reference Classes: Generalizing Reference Class Generator objects? Jon Clayden Reference Classes: Generalizing Reference Class Generator objects? William Dunlap must .Call C functions return SEXP? Simon Urbanek must .Call C functions return SEXP? Daniel Lee Reference Classes: Generalizing Reference Class Generator objects? Andrew Piskorski must .Call C functions return SEXP? Vitalie S. expressions as active bindings?

Wednesday, October 27, 2010 16 emails

Dominick Samperi TEXINPUTS and Sweave Simon Urbanek must .Call C functions return SEXP? Hadley Wickham Rbuildignore and mercurial Gabor Grothendieck Rbuildignore and mercurial Terry Therneau Rbuildignore and mercurial Dirk Eddelbuettel must .Call C functions return SEXP? Andrew Piskorski must .Call C functions return SEXP? Henrik Bengtsson Documentation of option 'help.ports' not in help("options") Dominick Samperi Sections 5.8.1 and 5.8.2 of Writing R Extensions (LinkingTo) Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD Simon Urbanek Sections 5.8.1 and 5.8.2 of Writing R Extensions (LinkingTo) Roebuck,Paul L documentation for representation() typo Dominick Samperi Sections 5.8.1 and 5.8.2 of Writing R Extensions (LinkingTo) Michael Lawrence R-2.12.0 hangs while loading RGtk2 on FreeBSD Duncan Murdoch Link to R 2.12.0 patched build for windows Simon Urbanek windows 64-bit package build on 32-bit machine

Tuesday, October 26, 2010 14 emails

Brian Ripley Link to R 2.12.0 patched build for windows Brian Ripley windows 64-bit package build on 32-bit machine Hervé Pagès windows 64-bit package build on 32-bit machine Michael Spiegel windows 64-bit package build on 32-bit machine Simon Urbanek windows 64-bit package build on 32-bit machine Michael Spiegel windows 64-bit package build on 32-bit machine Brian Diggs Link to R 2.12.0 patched build for windows Hervé Pagès cannot connect to an FTP server with long HELLO message John Chambers Reference classes robin hankin S4 methods for rbind() Martin Morgan S4 methods for rbind() Jon Clayden Reference classes robin hankin S4 methods for rbind() Brian Ripley cannot connect to an FTP server with long HELLO message

Monday, October 25, 2010 11 emails

Duncan Murdoch Sweave and absolute escaped backslashed Windows paths in R 2.12.0 Duncan Murdoch Sweave and absolute escaped backslashed Windows paths in R 2.12.0 Brian Diggs Sweave and absolute escaped backslashed Windows paths in R 2.12.0 Hans-Peter Suter Possible bug with scrambled messages on Win7-64bit using R2.12.0 (32/64 bit version) Simon Urbanek "$<-" fails (invalid subscript type 'language') Vitalie S. "$<-" fails (invalid subscript type 'language') Martin Morgan R-devel CMD build fails when vignette present Brian Ripley R-devel CMD build fails when vignette present Vitalie S. Plans for tighter integration of reference classes in R. Vitalie S. "$<-" fails (invalid subscript type 'language') Vitalie S. "$<-" fails (invalid subscript type 'language')

Sunday, October 24, 2010 12 emails

Bertram, Alexander R on the JVM, anyone else interested in joining? John Chambers Plans for tighter integration of reference classes in R. Peter Dalgaard "$<-" fails (invalid subscript type 'language') Simon Urbanek "$<-" fails (invalid subscript type 'language') Martin Morgan R-devel CMD build fails when vignette present Vitalie S. Plans for tighter integration of reference classes in R. Vitalie S. "$<-" fails (invalid subscript type 'language') John Chambers Plans for tighter integration of reference classes in R. David Winsemius "$<-" fails (invalid subscript type 'language') Vitalie S. "$<-" fails (invalid subscript type 'language') Vitalie S. "$<-" fails (invalid subscript type 'language') Vitalie S. Plans for tighter integration of reference classes in R.

Saturday, October 23, 2010 9 emails

Martin Maechler new.env does not recognize parents from subclassesof "environment" John Chambers Plans for tighter integration of reference classes in R. Peter Dalgaard new.env does not recognize parents from subclassesof "environment" Uwe Ligges new.env does not recognize parents from subclassesof "environment" Martin Maechler new.env does not recognize parents from subclassesof "environment" Uwe Ligges new.env does not recognize parents from subclassesof "environment" Uwe Ligges new.env does not recognize parents from subclassesof "environment" Vitalie S. Plans for tighter integration of reference classes in R. Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD

Friday, October 22, 2010 15 emails

Charles Geyer possible error checking bug and documentation bug in ts Jon Clayden Reference classes Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD Vitalie S. new.env does not recognize parents from subclassesof "environment" John Chambers Reference classes John Chambers new.env does not recognize parents from subclassesof "environment" John Chambers Reference classes Vitalie S. new.env does not recognize parents from subclassesof "environment" Henrik Bengtsson CRAN: Windows builds/pages outdated? Jon Clayden Reference classes Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD Matt Shotwell Linking to lapack Michael Lawrence R-2.12.0 hangs while loading RGtk2 on FreeBSD Douglas Bates Linking to lapack Nick Sabbe Linking to lapack

Thursday, October 21, 2010 7 emails

Hervé Pagès cannot connect to an FTP server with long HELLO message John Chambers new.env does not recognize parents from subclassesof "environment" Rainer Hurling R-2.12.0 hangs while loading RGtk2 on FreeBSD William Dunlap new.env does not recognize parents from subclassesof "environment" Vitalie S. new.env does not recognize parents from subclasses of "environment" Vitalie S. new.env does not recognize parents from subclasses of "environment" Shane Conway Scripting SVG with R

Wednesday, October 20, 2010 6 emails

Martin Morgan library verbose option doesn't stop "Loading required package XYZ" Dominick Samperi library verbose option doesn't stop "Loading required package XYZ" David Winsemius library verbose option doesn't stop "Loading required package XYZ" Dominick Samperi library verbose option doesn't stop "Loading required package XYZ" John Chambers new.env does not recognize parents from subclasses of "environment" Vitalie S. new.env does not recognize parents from subclasses of "environment"

Tuesday, October 19, 2010 6 emails

Dario Strbenac Loading Cached Weaver Objects Martin Morgan Loading Cached Weaver Objects Brian Ripley Missing libpthread in RTools Dario Strbenac Loading Cached Weaver Objects Davor Cubranic Missing libpthread in RTools Uwe Ligges Rcmd build 32bit-only package on win7 64 bit platform?

Monday, October 18, 2010 10 emails

Dominick Samperi Creating a Windows import lib from R.dll (x64)? Joe Conway Creating a Windows import lib from R.dll (x64)? Dominick Samperi Creating a Windows import lib from R.dll (x64)? Sharpie [via R] Incorrect positioning of raster images on Windows Hans-Peter Suter Rcmd build 32bit-only package on win7 64 bit platform? William Dunlap wishlist: system.file(..., mustExist = TRUE) Stefan Theussl r-forge down? Philippe GROSJEAN r-forge down? Stefan Theussl r-forge down? Peter Dalgaard make error for R 2.13.0 (and 2.12.0)

Sunday, October 17, 2010 10 emails

Bill Venables R 2.12.0 problems with Windows XP 32-bit binary installer Brian Ripley R 2.12.0 problems with Windows XP 32-bit binary installer Hodgess, Erin R 2.12.0 problems with Windows XP 32-bit binary installer Duncan Murdoch R 2.12.0 problems with Windows XP 32-bit binary installer Bill Venables R 2.12.0 problems with Windows XP 32-bit binary installer Radford Neal make error for R 2.13.0 (and 2.12.0) Duncan Murdoch R 2.12.0 doesn't install properly under Windows Vista Hodgess, Erin R 2.12.0 doesn't install properly under Windows Vista Tengfei Yin make error for R 2.13.0 Dominick Samperi R 2.12.0 doesn't install properly under Windows Vista

Saturday, October 16, 2010 4 emails

Joshua Wiley R 2.12.0 doesn't install properly under Windows Vista Duncan Murdoch R 2.12.0 doesn't install properly under Windows Vista Dominick Samperi R 2.12.0 doesn't install properly under Windows Vista Ben Bolker r-forge down?

Friday, October 15, 2010 13 emails

Luke Tierney calling browser on error Duncan Murdoch Missing libpthread in RTools Davor Cubranic Missing libpthread in RTools Marc Schwartz Package 'nlme' fails 'make check-all' in R 2.12.0 patched built from source William Dunlap calling browser on error Vadim Ogranovich calling browser on error Brian Ripley Package 'nlme' fails 'make check-all' in R 2.12.0 patched built from source Joshua Ulrich calling browser on error Vadim Ogranovich calling browser on error Marc Schwartz Package 'nlme' fails 'make check-all' in R 2.12.0 patched built from source Patrick Aboyoun Adding more man page links to base::all.vars Gabriel Becker Scripting SVG with R Friedrich Leisch My retraced version of R logo in SVG

Thursday, October 14, 2010 6 emails

Janko Thyson Including data in packages Janko Thyson Including data in packages Dirk Eddelbuettel Including data in packages Janko Thyson Including data in packages Paul Gilbert rc make error Tobias Wolf My retraced version of R logo in SVG

Wednesday, October 13, 2010 8 emails

Ravi Varadhan Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified] Troy Robertson Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified] Erik Iverson list comprehension to create an arbitrary-sized list with arbitrary names/values Olaf Mersmann list comprehension to create an arbitrary-sized list with arbitrary names/values Steve Kim list comprehension to create an arbitrary-sized list with arbitrary names/values Wolfgang Huber Scripting SVG with R Ravi Varadhan Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified] Ravi Varadhan Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified]

Tuesday, October 12, 2010 7 emails

Troy Robertson Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified] Troy Robertson Wierd nlm behaviour in 2.10.1 and 2.12.0 [Sec=Unclassified] Hervé Pagès 'R CMD build' not cleaning the src/ folder on Windows G. Jay Kerns same random numbers in different sessions Paul Gilbert same random numbers in different sessions Martin Morgan data set mube S4 class to be submitted to Bioconductor lan gao data set mube S4 class to be submitted to Bioconductor

Monday, October 11, 2010 3 emails

Berwin A Turlach Query about .check_packages_used_in_examples Mehrdad Shamsi Lattice::bwplot unexpected behaviour when using vector of colors Brian Ripley Query about .check_packages_used_in_examples

Sunday, October 10, 2010 3 emails

Hervé Pagès 'R CMD build' not cleaning the src/ folder on Windows Berwin A Turlach Query about .check_packages_used_in_examples Berwin A Turlach Query about .check_packages_used_in_examples

Saturday, October 9, 2010 4 emails

Peter Dalgaard What do you call the value that represents a missing argument? Hadley Wickham What do you call the value that represents a missing argument? Patrick Burns symbol and symbols help files Vitalie S. What do you call the value that represents a missing argument?

Friday, October 8, 2010 13 emails

Charles C. Berry What do you call the value that represents a missing argument? Duncan Murdoch NULL assignment will change the expression's class into list Dirk Eddelbuettel R 2.12.0 alpha/beta/rc warning: spurious or not? Hadley Wickham What do you call the value that represents a missing argument? Martin Morgan R 2.12.0 alpha/beta/rc warning: spurious or not? Dirk Eddelbuettel R 2.12.0 alpha/beta/rc warning: spurious or not? Vitalie S. NULL assignment will change the expression's class into list Duncan Murdoch NULL assignment will change the expression's class into list Vitalie S. NULL assignment will change the expression's class into list Brian Ripley model.frame deficiency Duncan Murdoch NULL assignment will change the expression's class into list Martin Kerr Selecting multiple columns with same name Vitalie S. NULL assignment will change the expression's class into list

Thursday, October 7, 2010 12 emails

Troy Robertson Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Kasper Daniel Hansen Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Peter Dalgaard Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Terry Therneau model.frame deficiency Troy Robertson Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Matt Shotwell long double, C, fortran Hervé Pagès tar problem when using 'R CMD build' on Windows Hervé Pagès cleanup_pkg() in tools:::.build_packages() is broken Simon Urbanek long double, C, fortran Richard Morey long double, C, fortran Duncan Murdoch Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Martin Maechler Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified]

Wednesday, October 6, 2010 7 emails

Troy Robertson Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] [Sec=Unclassified] Martin Morgan Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] Troy Robertson Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] Tena Sakai How do I put ldpaths in a specific place? Claudia Beleites SweaveInput + keep.source = TRUE trouble Kasper Daniel Hansen possible bug in summaryRprof with memory.profiling=TRUE Simon Urbanek How do I put ldpaths in a specific place?

Tuesday, October 5, 2010 8 emails

Tena Sakai How do I put ldpaths in a specific place? Vinh Nguyen args() and body() equivalents for S4 methods? Vinh Nguyen args() and body() equivalents for S4 methods? Duncan Murdoch SweaveInput + keep.source = TRUE trouble Renaud Gaujoux library: loading of required packages and argument 'lib.loc' Duncan Murdoch SweaveInput + keep.source = TRUE trouble Claudia Beleites SweaveInput + keep.source = TRUE trouble Claudia Beleites SweaveInput + keep.source = TRUE trouble

Monday, October 4, 2010 10 emails

Brian Ripley History of seq and seq.int 陈涵锋 Hello Troy Robertson Recursion error after upgrade to R_2.11.1 [Sec=Unclassified] Troy Robertson S4 class help pages [Sec=Unclassified] it-r-devel at ml.epigenomics.com R 2.12.0 beta (r53110) fails make check on Ubuntu hardy Brian Ripley R 2.12.0 beta (r53110) fails make check on Ubuntu hardy it-r-devel at ml.epigenomics.com R 2.12.0 beta (r53110) fails make check on Ubuntu hardy Simone Giannerini tabulate() does not check for input bounds Duncan Murdoch S4 class help pages [Sec=Unclassified] Harold Petithomme Unexplained strange behaviour of callNextMethod in S4 methods

Sunday, October 3, 2010 20 emails

Saturday, October 2, 2010 8 emails

Deepayan Sarkar strange interaction between rasterImage and Grid graphics Paul Murrell strange interaction between rasterImage and Grid graphics Baptiste Auguie strange interaction between rasterImage and Grid graphics Duncan Murdoch Eval and the enclos argument Hadley Wickham Eval and the enclos argument Duncan Murdoch Eval and the enclos argument Hadley Wickham Eval and the enclos argument Deepayan Sarkar strange interaction between rasterImage and Grid graphics

Friday, October 1, 2010 8 emails

Hervé Pagès cleanup_pkg() in tools:::.build_packages() is broken Jeffrey Horner Will PrintWarnings remain non static? Joris Meys scoping goes wrong when some functions are used within others. William Dunlap scoping goes wrong when some functions are used within others. Duncan Murdoch scoping goes wrong when some functions are used within others. Erik Iverson scoping goes wrong when some functions are used within others. Joris Meys scoping goes wrong when some functions are used within others. Baptiste Auguie strange interaction between rasterImage and Grid graphics

R-devel October 2010