Negatives density values (PR#8876)
On 5/18/2006 10:51 AM, ecu at info.fundp.ac.be wrote:
Full_Name: Cuvelier Etienne Version: R version 2.2.1 OS: Windows XP Submission from: (NULL) (81.240.71.204) If we use the "density" function "far" from the data, some values are negatives. I know that these value of the density are "near equal" to zero, but the change of sign can involve some "false" decision.
I wouldn't consider this a bug, rather a consequence of using the Fourier transform to do the density estimate, as documented. If slightly negative values of the density cause trouble for you, then use pmax(density, 0) to force them to be non-negative, or use a different algorithm for the estimates. Duncan Murdoch
Here is an example of this fact:
x = c(0.006, 0.002, 0.024, 0.02, 0.034, 0.09, 0.074, 0.072, 0.122,
+ 0.048, 0.044, 0.168)
min(x)
[1] 0.002
max(x)
[1] 0.168
result = density(x,n=20, from = -1 , to = 1) result$y
[1] 2.433854e-17 1.726562e-17 1.285227e-16 2.359248e-16 [5] 4.628709e-17 -1.535879e-16 1.438105e-16 2.023210e-16 [9] 2.649354e-11 1.438340e-01 7.679909e+00 1.767860e+00 [13] 2.056151e-04 -1.407219e-16 -3.575895e-18 -1.979607e-16 [17] -1.574544e-17 -2.257917e-17 -2.305234e-16 4.052727e-18
#A plot of the "fluctuations" near zero plot(result$x,result$y,type="l",xlim=c(-1,1),ylim=c(-10^-14,10^-14)) abline(h=0) #All neagtives value of density are "near equal" to zero all(apply(as.matrix(result$y[result$y<0]),1,all.equal, target=0)==TRUE)
[1] TRUE
sessionInfo()
R version 2.2.1, 2005-12-20, i386-pc-mingw32 attached base packages: [1] "methods" "stats" "graphics" "grDevices" "utils" [6] "datasets" "base"
Sys.info()
sysname release
"Windows" "NT 5.1"
version nodename
"(build 2600) Service Pack 2" "WINXP"
machine login
"x86" "Etienne"
user
"Etienne"
R.Version()
$platform [1] "i386-pc-mingw32" $arch [1] "i386" $os [1] "mingw32" $system [1] "i386, mingw32" $status [1] "" $major [1] "2" $minor [1] "2.1" $year [1] "2005" $month [1] "12" $day [1] "20" $"svn rev" [1] "36812" $language [1] "R"
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