-----Original Message-----
From: r-devel-bounces at r-project.org
[mailto:r-devel-bounces at r-project.org] On Behalf Of Uwe Ligges
Sent: Wednesday, September 30, 2009 9:49 AM
To: zong-pei.han at imm.ox.ac.uk
Cc: r-devel at r-project.org
Subject: Re: [Rd] Installation problem from R 2.8.x
What you call a bug in R has never been reported since R-2.8.0 was
recent. Hence I guess it is a permission issue on your system.
Or do you think nobody else tried to install a package during
the last
12 months?
Uwe Ligges
zong-pei.han at imm.ox.ac.uk wrote:
Dear Developers,
Since 2.8, R installation has got a bug in it such
that if a package has a "configure" file then it
cannot be installed without modification.
For example:
* Installing *source* package 'foreign' ...
ERROR: 'configure' exists but is not executable --
see the 'R Installation and Adminstration Manual'
* Removing '/usr/local/source_code/Linux/R/R-2.9.2/library/foreign'
make[2]: *** [foreign.ts] Error 1
In fact, 'configure' is executable!!! So I have to manually
run 'configure', remove 'configure', and then repackage
foreign_0.8-37.tar.gz so it can be installed.
This bug makes it very time consuming to add any package
which has a 'configure' in it. And the bug seems to be
in src/library/tools/R/install.R
Regards,
Dr Zong-Pei Han
UNIX Systems Administrator
Computational Biology Research Group
University of Oxford
http://www.cbrg.ox.ac.uk/