Incomplete ouput with sink and split=TRUE e.g. with writeLines (PR#10713)
Full_Name: Jean-Olivier Irisson Version: 2.6.1 OS: OS X 10.5.1, Linux FC 8 Submission from: (NULL) (194.167.139.32) Example steps:
sink("test1.txt")
cat("foo\n")
writeLines("bar\n")
sink()
sink("test2.txt", split=T)
cat("foo\n")
foo
writeLines("bar\n")
sink()
And the content of the files are: $ head test* ==> test1.txt <== foo bar ==> test2.txt <== foo bar So all the output is correctly directed to the file connection but only some of it is directed to the console (cat but not writeLines). This can be a problem with writeLines but Duncan Murdoch on R-help stated that: "it is probably a sign of a bigger problem in sink()". Real life example:
sink("test3.txt", split=T)
t.test(runif(10),round(runif(10)*2))
data: runif(10) and round(runif(10) * 2) alternative hypothesis: true difference in means is not equal to 0 95 percent confidence interval: -0.9403446 0.2048443 sample estimates: mean of x mean of y 0.5322499 0.9000000
sink()
$ head test3.txt Welch Two Sample t-test data: runif(10) and round(runif(10) * 2) t = -1.3766, df = 14.103, p-value = 0.1901 alternative hypothesis: true difference in means is not equal to 0 95 percent confidence interval: -0.9403446 0.2048443 sample estimates: mean of x mean of y Thank you in advance for your help.