Bug in nlm, found using sem; failure in several flavors (PR#13883)
A wild guess, based on some recent "non-deterministic" behavior in lme4: could this be driven by a bug in optimized linear algebra libraries (BLAS/LAPACK)? (Unfortunately, I'm not clear on how to check the versions of BLAS/LAPACK being used and whether they are subject to bugs, but perhaps someone else can comment ...) Ben Bolker
Adam D. I. Kramer-2 wrote:
This message is in MIME format. The first part should be readable text, while the remaining parts are likely unreadable without MIME-aware tools. --1660387551-150661043-1249684349=:2997 Content-Type: TEXT/PLAIN; charset=iso-8859-1; format=flowed Content-Transfer-Encoding: QUOTED-PRINTABLE Hi Jeff, =09As mentioned in my message, I *did* replicate on another platform.=20 One platform was running linux in a VM, the other running MacOSX, on two different physical machines. The problem did not replicate on a PowerPC box, so if it is a bug with intel chips, I think it's also appropriate to report here given that the problem seems to cross the OS boundary. I do no= t have access to a Windows machine. =09Also, I have spent a decent amount of time running memory testers on the first machine's memory, to ensure that physical memory is not a problem...the classic "memcheck" program finds no trouble. =09The CSV and .ram files both came through as base-64-encoded attachments, which you actually quoted back to me in your response, below...but in case your mail client can't read those and/or you are interested in this bug, I have pasted them at the end of this message (sinc= e they're quite small). =09And thanks for the shout-out for bacon. I bought this domain name in undergrad many years ago, and I must say, I've never regretted it! --Adam On Fri, 7 Aug 2009, Jeff Ryan wrote:
Adam, It seems that your attachment didn't make it through. That aside, my experience with strange errors like those (random type not implemented ones) has been that you may be looking at a memory problem on you machine. Given that you can't replicate on another platform (and the .csv file didn't come through), I would think it wise to start there. My 2c. And I love bacon too :) Jeff On Fri, Aug 7, 2009 at 1:10 PM, <adik at ilovebacon.org> wrote:
=A0This message is in MIME format. =A0The first part should be readable =
text,
=A0while the remaining parts are likely unreadable without MIME-aware to=
ols.
--1660387551-1458482416-1249639718=3D:2997 Content-Type: TEXT/PLAIN; CHARSET=3DUS-ASCII; FORMAT=3Dflowed Content-ID: <Pine.LNX.4.64.0908071039211.2997 at parser.ilovebacon.org> Hello, =A0 =A0 =A0 =A0There appears to be a bug in the nlm function, which I di=
scovered
when trying to run an SEM. =A0The SEM is not bizarre; the covariance mat=
rix is
solve-able and the eigenvalues are greater than zero, and I do not belie=
ve
the "sem" package per se to be the problem (as nlm keeps being the part =
that
fails, though I can't replicate this with other nlm tasks). =A0I apologi=
ze if
I have put too many much information in this message; I'm not a programm=
er
by trade so I don't really know what's going on here, which hampers my
ability to write consise bug reports.
Here is the code I use:
library(sem)
ice.S <- read.csv("iceS.csv") # attached
rownames(ice.S) <- ice.S[,1]
ice.S[,1] <- NULL
ice.S <- as.matrix(ice.S)
ice.ram <- specify.model("ice.ram") # attached
ice.N <- 342
ice.sem <- sem(ram=3Dice.ram, S=3Dice.S, N=3Dice.N)
...at this point, any number of problems could occur. I have seen the
following.
1) Simple lack of convergence. (might be my model's fault.)
2) Error in nlm(if (analytic.gradient) objective.2 else objective.1,
sta=
rt,
: =A0 type 31 is unimplemented in 'type2char' 3) =A0*** caught segfault *** address 0xc019c87b, cause 'memory not mapped' Traceback: =A01: nlm(if (analytic.gradient) objective.2 else objective.1, start, hessian =3D TRUE, iterlim =3D maxiter, print.level =3D if (debug) 2 else=
0,
typsize =3D typsize, ...) =A02: sem.default(ram =3D ram, S =3D S, N =3D N, param.names =3D pars, v=
ar.names =3D
vars, =A0 =A0 fixed.x =3D fixed.x, debug =3D debug, ...) =A03: sem(ram =3D ram, S =3D S, N =3D N, param.names =3D pars, var.names=
=3D vars,
fixed.x =3D fixed.x, debug =3D debug, ...) =A04: sem.mod(ram =3D ice.ram, S =3D ice.S, N =3D ice.N) =A05: sem(ram =3D ice.ram, S =3D ice.S, N =3D ice.N) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace Selection: 1 aborting ... Segmentation fault swiss:data$ (no core was dumped). Trying with debug mode provides other interesting errors:
ice.sem <- sem(ram=3Dice.ram, S=3Dice.S, N=3Dice.N, debug=3DTRUE)
...gets up to some iteration (not always 15), and then R dies ungraceful=
ly,
and exits to the shell: iteration =3D 15 Step: =A0[1] =A01.253132e-02 =A01.183343e-02 -7.651342e-03 -2.490800e-03 =A02.=
278938e-03
=A0[6] =A03.197431e-04 =A06.137849e-04 -2.496882e-03 -1.065829e-03 -2.11=
8179e-03
[11] =A02.942936e-03 -1.335936e-03 -3.665618e-03 =A03.090566e-03 =A08.53=
4956e-04
[16] -1.440421e-03 -5.230877e-04 -1.053686e-04 -9.771005e-04 -4.269216e-=
04
[21] =A07.261694e-05 -1.039668e-03 -8.409151e-03 -3.497456e-03 =A02.2168=
99e-03
[26] -4.633520e-03 -4.052130e-03 -4.746537e-03 -1.589622e-03 -2.523766e-=
04
Parameter: =A0[1] -0.76604614 -1.19639662 =A00.83456888 =A00.72540413 =A00.08482452=
=A00.56180393
=A0[7] =A00.50615814 =A00.55728015 =A00.83796696 =A00.88371335 -0.704651=
16 =A00.85251098
[13] -0.18346956 =A00.66857787 =A00.57012481 =A00.39116561 =A00.91237990=
=A00.63951482
[19] =A00.26601566 =A00.29240836 =A00.44710919 =A00.94734056 =A06.520390=
15 =A00.02524762
[25] -0.01614603 =A02.88198219 =A00.03442452 =A03.52272237 =A01.44698423=
-0.72964745
Function Value [1] -15175.94 Gradient: =A0[1] -2.085412e+07 -3.819717e+07 =A03.883989e+07 =A01.352594e+00 -4.28=
3329e+00
=A0[6] -1.437250e+00 -6.558913e-01 =A01.358276e+00 =A07.930865e+05 -1.29=
3853e+06
[11] -5.816627e+03 =A05.908197e+05 -2.705742e+08 -1.194400e+07 -4.007083=
e+07
[16] -4.143068e+07 -6.159782e-01 =A01.044274e-01 -8.591048e+00 -2.083471=
e+00
[21] -7.548753e-01 -5.418994e-01 -2.799228e+02 -1.321739e+07 -3.517728e+=
07
[26] -7.106654e+02 -7.335293e+06 -7.335285e+05 =A03.117764e-01 -2.234989=
e+04
Abort trap swiss:data$ ...I have also seen convergence reached, and nlm then die with this mess=
age:
Error in nlm(if (analytic.gradient) objective.2 else objective.1, start, : =A0 type 27 is unimplemented in 'type2char' (similar to above, but now referring to type 27) I have shown this effect (or something similar...never know how it'll fa=
il
next) on the following platforms:
version
=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0_ platform =A0 =A0 =A0 i386-apple-darwin9.7.0 arch =A0 =A0 =A0 =A0 =A0 i386 os =A0 =A0 =A0 =A0 =A0 =A0 darwin9.7.0 system =A0 =A0 =A0 =A0 i386, darwin9.7.0 status major =A0 =A0 =A0 =A0 =A02 minor =A0 =A0 =A0 =A0 =A09.1 year =A0 =A0 =A0 =A0 =A0 2009 month =A0 =A0 =A0 =A0 =A006 day =A0 =A0 =A0 =A0 =A0 =A026 svn rev =A0 =A0 =A0 =A048839 language =A0 =A0 =A0 R version.string R version 2.9.1 (2009-06-26)
sessionInfo()
R version 2.9.1 (2009-06-26) i386-apple-darwin9.8.0 locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats =A0 =A0 graphics =A0grDevices utils =A0 =A0 datasets =A0method=
s =A0 base
other attached packages: [1] sem_0.9-17 loaded via a namespace (and not attached): [1] tcltk_2.9.1 tools_2.9.1 (I admit to having compiled this version of R myself (to link to a hand-compiled ATLAS), though no errors were thrown in the compilation st=
age.
I compiled using this config string, at first... ./configure --prefix=3D/usr/local --with-x --disable-R-framework --enabl=
e-threads=3Dposix --with-blas=3D"/usr/local/lib/libptf77blas.a /usr/local/l= ib/libptcblas.a /usr/local/lib/libatlas.a -lpthread" --with-lapack=3D"/usr/= local/lib/liblapack.a /usr/local/lib/libptf77blas.a /usr/local/lib/libptcbl= as.a /usr/local/lib/libatlas.a -lpthread" --without-aqua CFLAGS=3D"-O3 -mtu= ne=3Dnocona -m32" CXXFLAGS=3D"-O3 -mtune=3Dnocona -m32" FFLAGS=3D"-O3 -mtun= e=3Dnocona -m32 -L/usr/lib/gcc/i686-apple-darwin9/4.2.1 -l gfortran" F77FLA= GS=3D"-O3 -mtune=3Dnocona -m32 -L/usr/lib/gcc/i686-apple-darwin9/4.2.1 -l g= fortran" FCFLAGS=3D"-O3 -mtune=3Dnocona -m32 -L/usr/lib/gcc/i686-apple-darw= in9/4.2.1 -l gfortran" LDFLAGS=3D"-m32 -L/sw/lib" CPPFLAGS=3D"-I/sw/include= " CC=3Dgcc-4.2 F77=3Dgfortran-4.2 FC=3Dgfortran-4.2 CXX=3Dg++-4.2 OBJC=3Dgc= c-4.2
...though I have also recompiled using simply this: ./configure --prefix=3D/usr/local --with-x --disable-R-framework ...and then re-installed SEM, and I got a few other, different error messages and core dumps, "including type 11 is unimplemented in 'type2ch=
ar'"
and "cannot coerce type 'weakref' to vector of type 'double'". =A0Runnin=
g with
debug=3DTRUE also segfaults sometimes, even after achieving "Current ite=
rate
is probably solution" status.)
version
=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0_ platform =A0 =A0 =A0 x86_64-unknown-linux-gnu arch =A0 =A0 =A0 =A0 =A0 x86_64 os =A0 =A0 =A0 =A0 =A0 =A0 linux-gnu system =A0 =A0 =A0 =A0 x86_64, linux-gnu status major =A0 =A0 =A0 =A0 =A02 minor =A0 =A0 =A0 =A0 =A09.1 year =A0 =A0 =A0 =A0 =A0 2009 month =A0 =A0 =A0 =A0 =A006 day =A0 =A0 =A0 =A0 =A0 =A026 svn rev =A0 =A0 =A0 =A048839 language =A0 =A0 =A0 R version.string R version 2.9.1 (2009-06-26)
sessionInfo()
R version 2.9.1 (2009-06-26) x86_64-unknown-linux-gnu locale: LC_CTYPE=3Den_US;LC_NUMERIC=3DC;LC_TIME=3Den_US;LC_COLLATE=3Den_US;LC_MO=
NETARY=3DC;LC_MESSAGES=3Den_US;LC_PAPER=3Den_US;LC_NAME=3DC;LC_ADDRESS=3DC;= LC_TELEPHONE=3DC;LC_MEASUREMENT=3Den_US;LC_IDENTIFICATION=3DC
attached base packages: [1] stats =A0 =A0 graphics =A0grDevices utils =A0 =A0 datasets =A0method=
s =A0 base
other attached packages: [1] sem_0.9-17 ...however, THIS platform does NOT show the bug:
version
=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0_ platform =A0 =A0 =A0 powerpc-unknown-linux-gnu arch =A0 =A0 =A0 =A0 =A0 powerpc os =A0 =A0 =A0 =A0 =A0 =A0 linux-gnu system =A0 =A0 =A0 =A0 powerpc, linux-gnu status major =A0 =A0 =A0 =A0 =A02 minor =A0 =A0 =A0 =A0 =A09.1 year =A0 =A0 =A0 =A0 =A0 2009 month =A0 =A0 =A0 =A0 =A006 day =A0 =A0 =A0 =A0 =A0 =A026 svn rev =A0 =A0 =A0 =A048839 language =A0 =A0 =A0 R version.string R version 2.9.1 (2009-06-26)
sessionInfo()
R version 2.9.1 (2009-06-26) powerpc-unknown-linux-gnu locale: LC_CTYPE=3Den_US.UTF-8;LC_NUMERIC=3DC;LC_TIME=3Den_US.UTF-8;LC_COLLATE=
=3Den_US.UTF-8;LC_MONETARY=3DC;LC_MESSAGES=3Den_US.UTF-8;LC_PAPER=3Den_US.U= TF-8;LC_NAME=3DC;LC_ADDRESS=3DC;LC_TELEPHONE=3DC;LC_MEASUREMENT=3Den_US.UTF= -8;LC_IDENTIFICATION=3DC
attached base packages: [1] stats =A0 =A0 graphics =A0grDevices utils =A0 =A0 datasets =A0method=
s =A0 base
other attached packages: [1] sem_0.9-17
...for this system, the model simply repeatedly fails to converge, wheth=
er
debug is set or not. I have also tried altering my model. This has resulted in the same bugs,=
but
instead of "every so often simply not converging," it actually converges=
and
appears to be the model I asked R to solve...but this is rare. Please let me know if I can provide any other info. Cordially, Adam D. I. Kramer --1660387551-1458482416-1249639718=3D:2997 Content-Type: AUDIO/X-PN-REALAUDIO; NAME=3Dice.ram Content-Transfer-Encoding: BASE64 Content-ID: <Pine.LNX.4.64.0908070308380.2997 at parser.ilovebacon.org> Content-Description: Content-Disposition: ATTACHMENT; FILENAME=3Dice.ram aW1wb3J0YW50IDwtLSBjaGFsbGVuZ2UsIE5BLCAxCmNvbXBsZXggIDwtLSBj aGFsbGVuZ2UsIGMuY29tcGxleCwgTkEKZGlmZmljdWx0IDwtLSBjaGFsbGVu Z2UsIGMuZGlmZmljdWx0LCBOQQptYW55ZGltZW5zaW9ucyA8LS0gY2hhbGxl bmdlLCBjLm1hbnlkaW1lbnNpb25zLCBOQQpjb3VsZGF2b2lkIDwtLSBjaGFs bGVuZ2UsIGMuY291bGRhdm9pZCwgTkEKb25seXNlbGYgPC0tIGNoYWxsZW5n ZSwgYy5vbmx5c2VsZiwgTkEKCndhc3JpZ2h0Y2hvaWNlIDwtLSBldmFsLCBO QSwgMQp0ZWxsZ29vZCA8LS0gZXZhbCwgZS50ZWxsZ29vZCwgTkEKdGVsbGJl c3QgPC0tIGV2YWwsIGUudGVsbGJlc3QsIE5BCm5lZ291dGNvbWUgPC0tIGV2 YWwsIGUubmVnb3V0Y29tZSwgTkEKCmVxdWFsaW5mbyA8LS0gaW5mb3JtZWQs IE5BLCAxCmNvbnRyb2wgPC0tIGluZm9ybWVkLCBpLmNvbnRyb2wsIE5BCmRl c2lyZWQgPC0tIGluZm9ybWVkLCBpLmRlc2lyZWQsIE5BCmhvd211Y2hpbmZv 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Mjk4NDE3MTc3MjYxLDAuMDkyMzE5MjcwNDQzOTkzNCwwLjE4MDUxNzMyNTc1 MjM4NywwLjk2MzIzNzMwOTczMDcyNiwtMC4xMjAxMzAxOTYzOTI0MDYsLTAu MDY4OTY1OTY1NzA1NzA5MSwwLjE2NTUzMzIwODc0MzU0NywwLjE5MTQyMTEz NDE4OTY4Mg0KInBvc291dGNvbWUiLC0wLjA2NzgwOTUzNzUwNzYyMjIsMC4x NDIwMzQzOTY5MDY4NzksMC4xNTEzNDM1Njc3NjE4NTksMC4xMjQxNTgzMzk1 MjczMjIsMC4wMjM4Nzc1NzI4Mjc3MTU3LC0wLjA0NTM5NzEzNzc3MDA4NDUs LTAuMDA1MDcyNjg2MDg0MTc3MDQsMC4wNDQyNDgxMjM1MDgyNTI4LDAuMjEz MDMyMjQyNDczMzE1LDAuMTYzODQ0NjQwNDk1OTgzLC0wLjEyMDEzMDE5NjM5 MjQwNiwwLjkzOTEwNzcxNzE4NjM4NSwtMC4yOTEyNjIzOTE4Mjc2NzEsMC4y NTYyNzQxOTU5ODMwMDQsMC4zNDY0NDE0MTExMTYxNDcNCiJuZWdvdXRjb21l IiwwLjE4MDU0OTkyNTAyNDM3NywwLjAwOTgxNTM4Mzk4NDM0ODUxLC0wLjAz MzY1NTkwNjMzMDc4MzUsMC4xNjA2NjEzMDc0ODY1NTksMC4zMjQ1MjU2NTMx NjQ1MDgsMC4zMzAwNzU2NjY1MjY3NjEsLTAuMTYwMTM3NTQ1ODcxNDQ4LDAu MjU4MzQ5NzAyNDYwNjYzLC0wLjIwOTg4MjQzMTc2NTExMCwtMC4yMTM4MDQ1 NTAwNDMyMzksLTAuMDY4OTY1OTY1NzA1NzA5MSwtMC4yOTEyNjIzOTE4Mjc2 NzEsMC45NTI1NTI5NjU3OTY0MjEsLTAuMjIxOTE3MjIyOTMwMTksLTAuMjMx MDMyMDE0OTI3Mzk3DQoiY29udHJvbCIsLTAuMDQyMDg0NDM2NDAzNzg3NCww LjA3MDU4Njg3NTY1Mzk3MzIsMC4wOTI5MDYyMjc5MzM0ODk4LC0wLjA4NjQ1 NzM3Mjc0NjYyNjUsLTAuMjQwNjM0ODA0ODg3MDU1LC0wLjIzNDcwNzUxNzY3 NzU4NiwwLjIxMTI1NzI1MjI4Nzk3OSwtMC4xOTY5OTMzNDYzMzcyMTQsMC4y MzkxMjQ1NTE2Mjk1NTksMC4yNTgwMzIzMjI4MjQ1OTksMC4xNjU1MzMyMDg3 NDM1NDcsMC4yNTYyNzQxOTU5ODMwMDQsLTAuMjIxOTE3MjIyOTMwMTksMC45 Mzc2MDc1MzMxODY1NzYsMC4zMTI2NjQxOTk2MzE2MjANCiJkZXNpcmVkIiwt MC4wNzMwNTc3ODk2OTAyOTY3LDAuMTA4MDAwNDQ5MzI4MzEzLDAuMTU5NzM1 NjE4NDIzMzM1LC0wLjA2ODM2NzQ4NDI0OTg4MDEsLTAuMjMzNjk2NTU0MTg5 MTY0LC0wLjIzOTEyNjk3MTQ4MDYyNSwwLjE0Nzg4NDM1MjU4ODQ5OSwtMC4y MjI1MzM5NTI2MzM0ODIsMC4yMTkwNzgzNTI4OTA2NTcsMC4xOTE4MjA0NDc0 MDQzMzUsMC4xOTE0MjExMzQxODk2ODIsMC4zNDY0NDE0MTExMTYxNDcsLTAu MjMxMDMyMDE0OTI3Mzk3LDAuMzEyNjY0MTk5NjMxNjIwLDAuOTYzMTMxNjM5 NTYwMTA4DQo=3D --1660387551-1458482416-1249639718=3D:2997--
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--=20 Jeffrey Ryan jeffrey.ryan at insightalgo.com ia: insight algorithmics www.insightalgo.com
CSV: "","wasrightchoice","tellgood","tellbest","important","complex","difficult"= ,"onlyself","manydimensions","howmuchinfo","equalinfo","couldavoid","posout= come","negoutcome","control","desired" "wasrightchoice",0.96369773178963,0.292736321229647,0.289852808489117,0.385= 266965362761,0.197644824696320,0.183041324062298,-0.146626347219879,0.14635= 4027797101,-0.132887596902506,-0.173965069111025,-0.268459162930567,-0.0678= 095375076222,0.180549925024377,-0.0420844364037874,-0.0730577896902967 "tellgood",0.292736321229647,0.955494246210856,0.757544193339566,0.19124118= 3203129,0.000174630417564688,0.00340887118071287,0.00963050474358034,0.0283= 894373316684,0.0188027539463299,-0.0157026381515985,-0.145795006741884,0.14= 2034396906879,0.00981538398434851,0.0705868756539732,0.108000449328313 "tellbest",0.289852808489117,0.757544193339566,0.948593590912408,0.23059895= 8597528,0.0302692106135439,0.0155447055783122,0.0321693281988669,0.06463123= 26187096,0.0102945085651246,-0.0196759997923009,-0.178765563354828,0.151343= 567761859,-0.0336559063307835,0.0929062279334898,0.159735618423335 "important",0.385266965362761,0.191241183203129,0.230598958597528,0.9644978= 8034361,0.647657141488375,0.514175974554114,-0.197506705917123,0.4747233324= 69875,-0.129091329816201,-0.189229123705341,-0.462195839265035,0.1241583395= 27322,0.160661307486559,-0.0864573727466265,-0.0683674842498801 "complex",0.197644824696320,0.000174630417564688,0.0302692106135439,0.64765= 7141488375,0.976321655762968,0.754978777309553,-0.262340425824052,0.6567175= 33361176,-0.160427139673018,-0.236210856083902,-0.385452100046623,0.0238775= 728277157,0.324525653164508,-0.240634804887055,-0.233696554189164 "difficult",0.183041324062298,0.00340887118071287,0.0155447055783122,0.5141= 75974554114,0.754978777309553,0.957324341661972,-0.183005587551624,0.523183= 993897632,-0.197833354430907,-0.228434713061776,-0.263587746021174,-0.04539= 71377700845,0.330075666526761,-0.234707517677586,-0.239126971480625 "onlyself",-0.146626347219879,0.00963050474358034,0.0321693281988669,-0.197= 506705917123,-0.262340425824052,-0.183005587551624,0.947852415443663,-0.268= 333979295612,0.0787191879215654,0.0800554430938036,0.163595277498758,-0.005= 07268608417704,-0.160137545871448,0.211257252287979,0.147884352588499 "manydimensions",0.146354027797101,0.0283894373316684,0.0646312326187096,0.= 474723332469875,0.656717533361176,0.523183993897632,-0.268333979295612,0.94= 991766261616,-0.113295667408177,-0.181576473170784,-0.279298417177261,0.044= 2481235082528,0.258349702460663,-0.196993346337214,-0.222533952633482 "howmuchinfo",-0.132887596902506,0.0188027539463299,0.0102945085651246,-0.1= 29091329816201,-0.160427139673018,-0.197833354430907,0.0787191879215654,-0.= 113295667408177,0.946722746137415,0.706976015582218,0.0923192704439934,0.21= 3032242473315,-0.209882431765110,0.239124551629559,0.219078352890657 "equalinfo",-0.173965069111025,-0.0157026381515985,-0.0196759997923009,-0.1= 89229123705341,-0.236210856083902,-0.228434713061776,0.0800554430938036,-0.= 181576473170784,0.706976015582218,0.964517562778328,0.180517325752387,0.163= 844640495983,-0.213804550043239,0.258032322824599,0.191820447404335 "couldavoid",-0.268459162930567,-0.145795006741884,-0.178765563354828,-0.46= 2195839265035,-0.385452100046623,-0.263587746021174,0.163595277498758,-0.27= 9298417177261,0.0923192704439934,0.180517325752387,0.963237309730726,-0.120= 130196392406,-0.0689659657057091,0.165533208743547,0.191421134189682 "posoutcome",-0.0678095375076222,0.142034396906879,0.151343567761859,0.1241= 58339527322,0.0238775728277157,-0.0453971377700845,-0.00507268608417704,0.0= 442481235082528,0.213032242473315,0.163844640495983,-0.120130196392406,0.93= 9107717186385,-0.291262391827671,0.256274195983004,0.346441411116147 "negoutcome",0.180549925024377,0.00981538398434851,-0.0336559063307835,0.16= 0661307486559,0.324525653164508,0.330075666526761,-0.160137545871448,0.2583= 49702460663,-0.209882431765110,-0.213804550043239,-0.0689659657057091,-0.29= 1262391827671,0.952552965796421,-0.22191722293019,-0.231032014927397 "control",-0.0420844364037874,0.0705868756539732,0.0929062279334898,-0.0864= 573727466265,-0.240634804887055,-0.234707517677586,0.211257252287979,-0.196= 993346337214,0.239124551629559,0.258032322824599,0.165533208743547,0.256274= 195983004,-0.22191722293019,0.937607533186576,0.312664199631620 "desired",-0.0730577896902967,0.108000449328313,0.159735618423335,-0.068367= 4842498801,-0.233696554189164,-0.239126971480625,0.147884352588499,-0.22253= 3952633482,0.219078352890657,0.191820447404335,0.191421134189682,0.34644141= 1116147,-0.231032014927397,0.312664199631620,0.963131639560108 RAM: important <-- challenge, NA, 1 complex <-- challenge, c.complex, NA difficult <-- challenge, c.difficult, NA manydimensions <-- challenge, c.manydimensions, NA couldavoid <-- challenge, c.couldavoid, NA onlyself <-- challenge, c.onlyself, NA wasrightchoice <-- eval, NA, 1 tellgood <-- eval, e.tellgood, NA tellbest <-- eval, e.tellbest, NA negoutcome <-- eval, e.negoutcome, NA equalinfo <-- informed, NA, 1 control <-- informed, i.control, NA desired <-- informed, i.desired, NA howmuchinfo <-- informed, i.howmuchinfo, NA posoutcome <-- informed, i.posoutcome, NA wasrightchoice <-> wasrightchoice, wasrightchoiceV, NA tellgood <-> tellgood, tellgoodV, NA tellbest <-> tellbest, tellbestV, NA negoutcome <-> negoutcome, negoutcomeV, NA onlyself <-> onlyself, onlyselfV, NA important <-> important, importantV, NA complex <-> complex, complexV, NA difficult <-> difficult, difficultV, NA manydimensions <-> manydimensions, manydimensionsV, NA couldavoid <-> couldavoid, couldavoidV, NA equalinfo <-> equalinfo, equalinfoV, NA control <-> control, controlV, NA desired <-> desired, desiredV, NA howmuchinfo <-> howmuchinfo, howmuchinfoV, NA posoutcome <-> posoutcome, posoutcomeV, NA eval <-> eval, evalV, NA challenge <-> challenge, challengeV, NA informed <-> informed, informedV, NA --1660387551-150661043-1249684349=:2997--
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View this message in context: http://www.nabble.com/Re%3A-Bug-in-nlm%2C-found-using-sem--failure-in-several-flavors-%28PR-13883%29-tp24875708p24906063.html Sent from the R devel mailing list archive at Nabble.com.