R-devel - August 2009 - Date View

Monday, August 31, 2009 8 emails

Rich Calaway Strange interaction of browser() and warnings Fabio Mathias Corrêa Problem in matrix definition? Christos Hatzis Problem in matrix definition? Mathieu Ribatet Problem in matrix definition? Fabio Mathias Corrêa Problem in matrix definition? Martin Maechler S4 Generics and NAMESPACE : justified warning ? (Ted Harding) Problem in matrix definition? Uwe Ligges Problem in matrix definition?

Sunday, August 30, 2009 2 emails

Fabio Mathias Corrêa Problem in matrix definition? Michael Spiegel c() poor error reporting (PR#13917)

Saturday, August 29, 2009 5 emails

William Dunlap round off errors? (PR#13918) Duncan Murdoch c() poor error reporting (PR#13917) Duncan Murdoch round off errors? (PR#13918) John Chambers S4: names stripped during instantiation of grandchildren of numeric class claus.henry at gmx.de round off errors? (PR#13918)

Friday, August 28, 2009 17 emails

Michael Spiegel c() poor error reporting (PR#13917) Vitalie S. names<- in data.frame (PR#13916) Simon Urbanek ARM v7/Linux Port/cross-compile? Dirk Eddelbuettel Simpler example of embedding R in C++ (Was: Clarifications please.) Andrew Piskorski ARM v7/Linux Port/cross-compile? Yohan Chalabi S4 Generics and NAMESPACE : justified warning ? Simon Urbanek Clarifications please. Vitalie S. S4: names stripped during instantiation of grandchildren of numeric class Abhijit Bera Clarifications please. Abhijit Bera Clarifications please. Simon Urbanek Clarifications please. Henric Nilsson (Public) R CMD check does not recognize S4 functions inside other functions? Martin Maechler Wishlist: specify the border color of boxes in legend() (PR#13913) Abhijit Bera Clarifications please. Martin Maechler Problem with standard generic methods in Matrix package Martin Maechler R CMD check does not recognize S4 functions inside other functions? Sylvain Loiseau R CMD check does not recognize S4 functions inside other functions?

Thursday, August 27, 2009 16 emails

Giles Hooker R CMD check does not recognize S4 functions inside other functions? Simon Urbanek ARM v7/Linux Port/cross-compile? Jonathan Wilner ARM v7/Linux Port/cross-compile? John Fox R 2.10.0 devel package check error Sylvain Loiseau Problem with standard generic methods in Matrix package Brian Ripley R 2.10.0 devel package check error Dirk Eddelbuettel Clarifications please. Martin Maechler Problem with standard generic methods in Matrix package John Fox R 2.10.0 devel package check error Abhijit Bera Clarifications please. Gabor Grothendieck c(<symbol>, <symbol) |-> expression instead of list Martin Maechler c(<symbol>, <symbol) |-> expression instead of list Frederic.Schutz at isb-sib.ch Backup ( *~ ) files in R 2.9.2 distribution (PR#13914) Gabor Grothendieck c(<symbol>, <symbol) |-> expression instead of list Frederic.Schutz at isb-sib.ch Wishlist: specify the border color of boxes in legend() (PR#13913) Martin Maechler c(<symbol>, <symbol) |-> expression instead of list

Wednesday, August 26, 2009 18 emails

Benjamin Hofner Errors in manpage of bs() (splines) (PR#13912) Simon Urbanek Clarifications please. Ulrike Grömping Problem with correct usage of formula environment Michael Gutteridge header containing (PR#13834) Martin Morgan Clarifications please. Simon Urbanek Cannot make 3 different R installations for 3 different valgrind-instrumentation levels David Winsemius Cannot make 3 different R installations for 3 different valgrind-instrumentation levels Abhijit Bera Clarifications please. Simon Urbanek Cannot make 3 different R installations for 3 different valgrind-instrumentation levels Marc Schwartz improving ?RweaveLatex Friedrich Leisch improving ?RweaveLatex David Winsemius Cannot make 3 different R installations for 3 different valgrind-instrumentation levels David Winsemius Cannot make 3 different R installations for 3 different valgrind-instrumentation levels Brian Ripley Problems opening R (PR#13908) Brian Ripley R CMD on windows 7 Martin Maechler improving ?RweaveLatex Uwe Ligges R CMD on windows 7 sloiseau at limsi.fr Problem with standard generic methods in Matrix package

Tuesday, August 25, 2009 18 emails

Yohan Chalabi R command line behaving funny Brian Ripley package dependencies specification Christos Hatzis package dependencies specification Martin Morgan package dependencies specification Simon Urbanek Cannot make 3 different R installations for 3 different valgrind-instrumentation levels lisazang at caltech.edu Problems opening R (PR#13908) Robert J. Hijmans R CMD on windows 7 William Revelle \code{\link{foo}} fails in 2.10.0 Christos Hatzis package dependencies specification Duncan Murdoch \code{\link{foo}} fails in 2.10.0 David Winsemius Cannot make 3 different R installations for 3 different valgrind-instrumentation levels Uwe Ligges problem with plot.lm? Duncan Murdoch \code{\link{foo}} fails in 2.10.0 William Revelle \code{\link{foo}} fails in 2.10.0 Ulrike Grömping Problem with correct usage of formula environment Abhijit Bera R command line behaving funny Abhijit Bera Clarifications please. Martin Maechler identical(0, -0)

Monday, August 24, 2009 14 emails

Stavros Macrakis nchar on factors Peter Dalgaard nchar on factors Stavros Macrakis nchar on factors Terry Therneau CRAN and noweb bappai Tk question Corrado Topi Formulas in gam function of mgcv package Dirk Eddelbuettel Package-level access to Rp->R_Quiet ? Thomas Lumley Basic Question regarding PROTECT Saptarshi Guha Basic Question regarding PROTECT Duncan Murdoch Basic Question regarding PROTECT Saptarshi Guha Basic Question regarding PROTECT Duncan Murdoch Basic Question regarding PROTECT Saptarshi Guha Basic Question regarding PROTECT Duncan Murdoch Basic Question regarding PROTECT

Sunday, August 23, 2009 1 email

Saptarshi Guha Basic Question regarding PROTECT

Saturday, August 22, 2009 8 emails

Marc Schwartz improving ?RweaveLatex Marc Schwartz improving ?RweaveLatex Marc Schwartz improving ?RweaveLatex Liviu Andronic improving ?RweaveLatex Henrik Bengtsson identical(0, -0) Vitalie S. more special completions Petr Savicky identical(0, -0) Deepayan Sarkar Lattice: Drawing a single contour line with a negative value fails

Friday, August 21, 2009 18 emails

Uwe F. Mayer R compilation problem on 64 bit SunOS (PR#13898) Martin Maechler identical(0, -0) Benilton Carvalho problem with plot.lm? Deepayan Sarkar more special completions Deepayan Sarkar more special completions Vitalie S. more special completions Romain Francois more special completions Deepayan Sarkar more special completions uwe_f_mayer at yahoo.com R installation problem with shared libraries (PR#13900) Brian Ripley header containing (PR#13834) Gabor Grothendieck Lightweight 'package' idea. Barry Rowlingson Lightweight 'package' idea. Romain Francois more special completions Brian Ripley sessionInfo() fails to correctly detect locale settings Brian Ripley R compilation problem on 64 bit SunOS (PR#13898) Peter Dalgaard R compilation problem on 64 bit SunOS (PR#13898) Peter Dalgaard sessionInfo() fails to correctly detect locale settings Liviu Andronic sessionInfo() fails to correctly detect locale settings

Thursday, August 20, 2009 9 emails

Brian Ripley R compilation problem on 64 bit SunOS (PR#13898) uwe_f_mayer at yahoo.com R installation problem with recommended packages (PR#13899) uwe_f_mayer at yahoo.com R compilation problem on 64 bit SunOS (PR#13898) Stavros Macrakis Documentation of ties.method argument in `rank` mrg at fhcrc.org header containing (PR#13834) Duncan Murdoch Problem using findVar( ) in combination with R's lazy evaluation Vitalie S. S4: inheritance of validity methods? + Inconsistency in order of validity checks. Simon Urbanek Problem using findVar( ) in combination with R's lazy evaluation MarcelK Problem using findVar( ) in combination with R's lazy evaluation

Wednesday, August 19, 2009 3 emails

Christian Brechbühler Polymorphism of predict Greg Snow Polymorphism of predict Thorn Thaler Lattice: Drawing a single contour line with a negative value fails

Tuesday, August 18, 2009 17 emails

Brian Ripley trouble building 2.10? Ross Boylan ?Random.user slightly out of sync with code (PR#13895) Simon Urbanek trouble building 2.10? Ben Bolker trouble building 2.10? Vitalie S. S4: inheritance of validity methods? Martin Morgan S4: inheritance of validity methods? Vitalie S. S4: inheritance of validity methods? Duncan Murdoch Calling C functions with value parameters Jeffrey J. Hallman Calling C functions with value parameters Martin Morgan S4: inheritance of validity methods? Martin Morgan S4 Generics and NAMESPACE : justified warning ? Simon Urbanek Calling C functions with value parameters Douglas Bates Calling C functions with value parameters Duncan Murdoch Calling C functions with value parameters Duncan Murdoch unnecessary braces? Gabor Grothendieck unnecessary braces? ktr at goldin-rudahl.com error during build: lstat64 already defined (PR#13894)

Monday, August 17, 2009 11 emails

Petr Savicky user supplied random number generators Ben Bolker unnecessary braces? Christian Brechbühler Polymorphism of predict Ross Boylan user supplied random number generators Charles Geyer R CMD check --use-valgrind doesn't run valgrind on tests Vitalie S. S4: inheritance of validity methods? Patrick Aboyoun Base "Object" class to use in S4 slot specification Jeffrey J. Hallman Calling C functions with value parameters Yohan Chalabi R CMD check --use-valgrind doesn't run valgrind on tests Yohan Chalabi S4 Generics and NAMESPACE : justified warning ? Brian Ripley R CMD check --use-valgrind doesn't run valgrind on tests

Sunday, August 16, 2009 7 emails

Charles Geyer R CMD check --use-valgrind doesn't run valgrind on tests Jari Oksanen eurodist example dataset is malformed Liviu Andronic Printing the null hypothesis (Ted Harding) Printing the null hypothesis Liviu Andronic Printing the null hypothesis (Ted Harding) Printing the null hypothesis Liviu Andronic Printing the null hypothesis

Saturday, August 15, 2009 2 emails

Peter Dalgaard power.t.test (PR#13891) Michael Dewey power.t.test (PR#13891)

Friday, August 14, 2009 8 emails

Justin Donaldson eurodist example dataset is malformed Duncan Murdoch Awkward escaping with five backslashes within \code{ } in new parse_Rd Peter Ruckdeschel Awkward escaping with five backslashes within \code{ } in new parse_Rd Brian Ripley (PR#13789) possible agrep bug; R 2.9.1, Mac OS X 10.5 Yuri D'Elia memory management Fabio Mathias Corrêa Problem with function in fortran 95 Simone Giannerini Problem with function in fortran 95 Ulrike Grömping Class design as used in package graphics

Thursday, August 13, 2009 18 emails

Dirk Eddelbuettel Package-level access to Rp->R_Quiet ? Joshua Ulrich Embed R, and provide a function to user scripts Saptarshi Guha Embed R, and provide a function to user scripts Saptarshi Guha Embed R, and provide a function to user scripts Saptarshi Guha Embed R, and provide a function to user scripts michaell at unimelb.edu.au power.t.test (PR#13891) EJ Nikelski segfault when unloading a shared library Terry Therneau CMD check error (bug?) Göran Broström CMD check error (bug?) Terry Therneau CMD check error (bug?) EJ Nikelski segfault when unloading a shared library Simon Urbanek memory management Yuri D'Elia memory management Adrian Dragulescu 10x slower merge in mac 2.9.1 vs. 2.9.0 (PR#13890) Adrian Dragulescu 10x slower merge in mac 2.9.1 vs. 2.9.0 (PR#13890) Simon Urbanek 10x slower merge in mac 2.9.1 vs. 2.9.0 (PR#13890) Ulrike Grömping Class design as used in package graphics Gavin Simpson eurodist example dataset is malformed

Wednesday, August 12, 2009 12 emails

Justin Donaldson eurodist example dataset is malformed Peter Dalgaard Bug in nlm, found using sem; failure in several flavors (PR#13883) richard_stahlhut at urmc.rochester.edu 10x slower merge in mac 2.9.1 vs. 2.9.0 (PR#13890) Petr Savicky identical(0, -0) kenneth.cater at bankofamerica.com Problem with Linux x86_64 RODBC and Netezza (PR#13889) Göran Broström Problem with function in fortran 95 Martin Maechler readBin() arg check has unnecessary overhead (patch included) Martin Maechler identical(0, -0) Jon Clayden readBin() arg check has unnecessary overhead (patch included) Martin Maechler readBin() arg check has unnecessary overhead (patch included) Petr Savicky identical(0, -0) Fabio Mathias Corrêa Problem with function in fortran 95

Tuesday, August 11, 2009 15 emails

Felix Andrews model.matrix evaluation challenges Duncan Murdoch Awkward escaping with five backslashes within \code{ } in new parse_Rd Peter Ruckdeschel Awkward escaping with five backslashes within \code{ } in new parse_Rd Paul Gilbert loadings function (PR#13886) Peter Dalgaard Appendix A problem (PR#13885) smckinney at bccrc.ca loadings function (PR#13886) Steven McKinney loadings function (PR#13886) Jon Clayden readBin() arg check has unnecessary overhead (patch included) Sklyar, Oleg (London) Changing the compiler gfortran to ifort Mike loadings function (PR#13886) Allen S. Rout FIFO on windows, redux Ben Bolker model.matrix evaluation challenges HStaley at aol.com Appendix A problem (PR#13885) Petr Savicky identical(0, -0) Martin Maechler identical(0, -0)

Monday, August 10, 2009 20 emails

Felix Andrews model.matrix evaluation challenges Peter Dalgaard Bug in nlm, found using sem; failure in several flavors (PR#13883) William Dunlap Bug in nlm, found using sem; failure in several flavors (PR#13883) Ben Bolker Bug in nlm, found using sem; failure in several flavors (PR#13883) Petr Savicky identical(0, -0) Duncan Murdoch identical(0, -0) David Scherrer Rcpp and variable protection Duncan Murdoch identical(0, -0) Simon Urbanek multicore mclapply hangs Simon Urbanek identical(0, -0) Rory Winston Error Building R + X11 on SuSe 10S Duncan Murdoch Error Building R + X11 on SuSe 10S Rory Winston Error Building R + X11 on SuSe 10S Markus Schmidberger multicore mclapply hangs Rory Winston Error Building R + X11 on SuSe 10 Rune Schjellerup Philosof multicore mclapply hangs Duncan Murdoch identical(0, -0) Rory Winston Duplicated lines in configure Petr Savicky identical(0, -0) Martin Maechler Why is strptime always returning a vector of length 9 ?

Sunday, August 9, 2009 14 emails

Martin Maechler Why is strptime always returning a vector of length 9 ? Ben Bolker model.matrix evaluation challenges Gavin Simpson Problem using model.frame with argument subset in own function Laurent Gautier Why is strptime always returning a vector of length 9 ? Marc Schwartz odbcConnectExcel on non-Windows? Spencer Graves odbcConnectExcel on non-Windows? Spencer Graves odbcConnectExcel on non-Windows? Gabor Grothendieck odbcConnectExcel on non-Windows? Dirk Eddelbuettel odbcConnectExcel on non-Windows? Spencer Graves odbcConnectExcel on non-Windows? Jeff Ryan Why is strptime always returning a vector of length 9 ? Douglas Bates Problem using model.frame with argument subset in own function Gabor Grothendieck Why is strptime always returning a vector of length 9 ? Laurent Gautier Why is strptime always returning a vector of length 9 ?

Saturday, August 8, 2009 4 emails

Gavin Simpson Problem using model.frame with argument subset in own function Gabor Grothendieck identical(0, -0) John C Nash identical(0, -0) Martin Maechler identical(0, -0)

Friday, August 7, 2009 21 emails

Adam D. I. Kramer Bug in nlm, found using sem; failure in several flavors (PR#13883) Adam D. I. Kramer Bug in nlm, found using sem; failure in several flavors (PR#13881) Duncan Murdoch R patched & devel versions as portable ZIP files Uwe Ligges R patched & devel versions as portable ZIP files Jeff Ryan Bug in nlm, found using sem; failure in several flavors (PR#13882) Jeff Ryan Bug in nlm, found using sem; failure in several flavors (PR#13881) Hans W Borchers R patched & devel versions as portable ZIP files Adam D. I. Kramer Bug in nlm, found using sem; failure in several flavors (PR#13881) Duncan Murdoch identical(0, -0) Martin Maechler identical(0, -0) Duncan Murdoch identical(0, -0) Martin Maechler identical(0, -0) Brian Ripley options( "menu" ) Duncan Murdoch Changing the compiler gfortran to ifort (Ted Harding) identical(0, -0) Fabio Mathias Corrêa Changing the compiler gfortran to ifort Romain Francois exec subdirectory of a package Duncan Murdoch identical(0, -0) Romain Francois options( "menu" ) Abhijit Bera Help with embedding R Martin Maechler identical(0, -0)

Thursday, August 6, 2009 13 emails

Matt Dowle Using svSocket with data.table Duncan Murdoch Repeatable, But Time Varying R GUI Crash (PR#13880) William Dunlap Repeatable, But Time Varying R GUI Crash (PR#13880) William Dunlap Repeatable, But Time Varying R GUI Crash (PR#13880) Duncan Murdoch Repeatable, But Time Varying R GUI Crash (PR#13880) Paul Johnson About numerical accuracy: should there be a rational number class for fractions? Ravi Varadhan Inaccurate complex arithmetic of R (Matlab is accurate) Brian Ripley Inconsistent documentation in Writing R Extensions (PR#13878) Brian Ripley Section 1.3.1 of R-Ext Documentation lists tests/Examples/pkg-Rex-Rout.save incorrectly (PR#13877) Brian Ripley Inconsistent documentation in Writing R Extensions (PR#13876) art27 at cantab.net Section 1.3.1 of R-Ext Documentation lists tests/Examples/pkg-Rex-Rout.save incorrectly (PR#13877) Brandon.J.Whitcher at gsk.com Inconsistent documentation in Writing R Extensions (PR#13876) Derek Eder tk_choose.filesn () (tcltk) intolerant of whitespace (PR#13875)

Wednesday, August 5, 2009 8 emails

Steven McKinney Wishlist: Navigate to "Index" page of help when no topic (PR#13872) Jeff Ryan inheriting C symbols Terry Therneau inheriting C symbols Jeff Ryan inheriting C symbols Terry Therneau inheriting C symbols Romain Francois exec subdirectory of a package Thomas Mang compiling DLL under Visual Studio IDE Martin Maechler Inaccurate complex arithmetic of R (Matlab is accurate)

Tuesday, August 4, 2009 33 emails

Monday, August 3, 2009 10 emails

Martin Maechler Inaccurate complex arithmetic of R (Matlab is accurate) Ravi Varadhan Inaccurate complex arithmetic of R (Matlab is accurate) Hans W Borchers Inaccurate complex arithmetic of R (Matlab is accurate) Rune Schjellerup Philosof debug: mtrace(fun, FALSE) doesn't work for me Petr Savicky incorrect result (41/10-1/10)%%1 (PR#13863) Martin Becker Inaccurate complex arithmetic of R (Matlab is accurate) ONKELINX, Thierry incorrect result (41/10-1/10)%%1 (PR#13863) Achim Zeileis incorrect result (41/10-1/10)%%1 (PR#13863) Sean O'Riordain incorrect result (41/10-1/10)%%1 (PR#13863) Peter Dalgaard incorrect result (41/10-1/10)%%1 (PR#13863)

Sunday, August 2, 2009 1 email

Ravi Varadhan Inaccurate complex arithmetic of R (Matlab is accurate)

Saturday, August 1, 2009 1 email

jan.hattendorf at unibas.ch incorrect result (41/10-1/10)%%1 (PR#13863)

R-devel August 2009