________________________________________
From: Simon Urbanek [simon.urbanek at r-project.org]
Sent: Wednesday, September 02, 2009 5:12 AM
To: Matias Silva
Cc: r-devel at r-project.org
Subject: Re: [Rd] Installing rJava RJDBC bad interpreter:
Permission denied
On Sep 1, 2009, at 21:05 , Matias Silva wrote:
Trying to install the above two packages via the
"install.packages("package_name")" command and
the "R CMD INSTALL file.tar.gz".
I receive the following error either way "sh: ./configure: /bin/sh:
bad interpreter: Permission denied".
I have tried to chmod and chown permissions and also ran dos2unix in
hopes that there is a CRLF
in some of the tar.gz files, but that doesn't seem to fix
the problem.
The problem is in your system not the packages. Please read the error
message carefully - it says your /bin/sh is broken. Fix it and all
should be well.
Cheers,
S
I'm looking for any help
I can get. I have tried the r-help and r-packages list. I have
tried this with the compiled
version of R and the RPM version of R.
* Installing *source* package ?rJava? ...
sh: ./configure: /bin/sh: bad interpreter: Permission denied
ERROR: configuration failed for package ?rJava?
* Removing ?/usr/lib64/R/library/rJava?
* Installing *source* package ?RJDBC? ...
** R
** preparing package for lazy loading
Error : package 'rJava' required by 'RJDBC' could not be found
ERROR: lazy loading failed for package ?RJDBC?
* Removing ?/usr/lib64/R/library/RJDBC?
I'm using the rpm version of R found here
http://cran.cnr.berkeley.edu/bin/linux/redhat/el5/x86_64
I ran the "R CMD javareconf" as root and set the JAVA_HOME
environment variable.
Here is my system configuration:
OS: CentOS 5.2 x86_64
JDK: java version "1.6.0_12"
Java(TM) SE Runtime Environment (build 1.6.0_12-b04)
Java HotSpot(TM) 64-Bit Server VM (build 11.2-b01, mixed mode)
R: 2.9.1
rJava: rJava_0.7-0.tar.gz
RJDBC: RJDBC_0.1-5.tar.gz
Thanks for your time and knowledge.
Best,
Matt
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