Message-ID: <4CAE1B37.5090006@fhcrc.org>
Date: 2010-10-07T19:10:47Z
From: Hervé Pagès
Subject: cleanup_pkg() in tools:::.build_packages() is broken
In-Reply-To: <4CA68B7F.5070208@fhcrc.org>
This has been fixed in R-beta. Thanks! H.
On 10/01/2010 06:31 PM, Herv? Pag?s wrote:
> Hi,
>
> The cleanup_pkg() function defined the big tools:::.build_packages()
> function in tools/R/build.R is currently broken. When Makefiles are
> used cleanup_pkg() doesn't clean anything because of the way system2()
> is called.
>
> For example, the call to Ssystem() on line 304 (Ssystem is a silent
> version of system2) is basically trying to do this:
>
> > system2(paste(Sys.getenv("MAKE", "make"), makefiles, "clean"))
> sh: make -f '/home/hpages/R-2.12/etc//Makeconf' -f Makefile clean: not
> found
>
> But it seems that with this new system2(), the arguments to the system
> command need to be passed separately thru the 'args' argument.
>
> Cheers,
> H.
>
--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpages at fhcrc.org
Phone: (206) 667-5791
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