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R-help May 2014

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0^0 computation in R : Why it is defined 1 in R ?

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A combinatorial assignment problem

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ASA CSP - call for short courses - deadline May 13

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Adding a column with a count of unique values

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Adding segments to a dot plot in ggplot2

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Assigning value Range for values

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Awaiting feedback/moderation (Re: Non-convergence in boot.stepAIC function with a logit model)

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Awaiting feedback/moderation (Re: Non-convergence in boot.stepAIC function with a logit model)

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Balloon plot scaling problem

5 msgs

Bayesian HMM

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Bayesian Network

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Bayesian PLS-Based Dimension Reduction and Classification Methods for Time to Event Data in R

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Bootstrapping the prediction intervals for regression

6 msgs

Boxplot colors

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Boxplots

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Bubble map in R

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Calculating the focal mean of a raster using an annulus

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Calculating transition probabilties

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Cannot Launch R Help Files under Window 8.1

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Capture change in variable in R

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Change position in package rgl

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Character type and size using spatstats

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Chicago, Data Mining Training (Hands-On, $35), Chicago, May 23rd

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Combine factorial column intp a new column

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Combining data frames

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Computer requirements to run R on huge datasets

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Conditional assignment of values to vector using ifelse

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Confusing behavior when using gsub to insert unicode character (minimal working example provided)

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Construction of Optimal Designs in the Language R

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Contour plots in R Studio

4 msgs

Convert to integers all entries of a table (for DESeq2)

6 msgs

Correlelogram with partial correlation coefficients

2 msgs

Counting number of days my program runs

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Course: Introduction to GAM and GAMM with R

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Creating Twitter network - rate limits being exceeded - cannot figure why

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Creating a "very long" function in R

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Creating a new column with the number of the observation

6 msgs

Creating multiple orthogonal designs

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Ctrl + r failure

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Cure and data type

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DESeq vs DESeq2 different DEGs results

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Dataframe: Average cells of two rows and replace them with one row

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Dataframe: Average cells of two rows and replace them with one row

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Degrees of Freedom GAM/GAMM

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Difference in coefficients in Cox proportional hazard estimates between R and Stata, why?

2 msgs

Difficulty in finding some R functions

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Discrete and Continuous variables

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Documenting docType data

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Does lmrob() account for autocorrelation and heteroskedasticity?

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EpiX Analytics - Quantitative Risk Analysis with R Course

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Error during working with wgcna and R

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Error in split.default

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Error message when fitting a binomial response model using glm

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Extracting the names of coefficients of random effects

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File coding problem: how to read a windows-1252 encoded file

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Fitting a Mixture of Noncentral Student t Distributions to a one-dimensional sample

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Fitting multiple nonlinear regression lines with nlrob()

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Freeing up memory in R

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From "deldir"

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Function Align produces an error, Package wavelets

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GETTING CLUSTERING RESULTS IN SOM , LIKE K-MEAN

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GETTING SOM CLUSTERING RESULT

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GLMNet Question for Multinomial Data For Determining The Right Number of Questions

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Generating random variables with given pairwise correlations

2 msgs

Getting data s from "Think or Swim " platform through R.

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Groupwise sum

3 msgs

Gui for R-Script

3 msgs

HMM states simulation

2 msgs

Help conduction Egger's test

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Help install sann package for Simulated Annealing

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Help with arrays

3 msgs

Help with passing in name of XTS file into write.table as a variable.

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How can I make this nested loop faster?

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How could I graph a special coordinate

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How do I create multiple orthogonal designs with the Conjoint package?

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How do I move the axis labels precisely

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How to Optimize two functions together in R

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How to add break in axis for grouped barplot?

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How to build and check an package on a system without tex latex?

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How to change the font size on the title of a xyplot

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How to change the order of the plot?

5 msgs

How to compute a P-value for a complex mixture of chi-squared distributions in R

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How to create a time series from a data set where some days are skipped

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How to create a time series from a data set where some days are skipped

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How to create multi variables

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How to define and calculate volume of 3D polygon?

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How to draw a transparent polygon

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How to examine the parameter values during iteration (nls)

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How to fix the format in write.csv

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How to follow

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How to illustrate an interaction with plotLMER.fnc

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How to illustrate data of a csv file as table (xtable?)

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How to include static PDFs vignettes in an R package

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How to make a Latex table using R

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How to match text string ith spaces

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How to unstack three columns into rows?

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How to write a loop in which i has to be in POSIX format?

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I Need Help with AMMI

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ICL for betamix()

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Inconsistent alphabetisation issue

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Install Windows/R/.zip package under Linux/R

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Installation problem

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Interpreting results of rq() when tau = -1

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Is there an easier way than this to list all functions in the global environment?

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Is there an easier way than this to list all functions in the global environment?

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Issues with fa() function in "psych"

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K-mean Clustering URL's and ranking them according to there recent visit .

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K-mean Clustering in URL's

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LInes with types

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Lack-of-fit test for linear mixed effects model (lme) including two fixed effects

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Lag in dataframe

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Lamperti trnasformation simulation.

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Large matrices and pairs/ggpairs

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Lattice Histogram with Normal Curve - Y axis as percentages

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Legend having lines with different types

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Legendre quadrature

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Login

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Logistic regression help!

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Loop Issue

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MLE

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MRF smoothers in MGCV - specifying neighbours

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Making a package works on any R version

3 msgs

Making a panel of scatter plots in R

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Making a partial profile factorial design in R

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Making a trial based Package for 30-days.

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Manipulating dataframes

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Markoc chain simulation of a sample path - to get empirical probabilities

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Max characters from deparse(substitute(.))?

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Mean of colMeans

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Mediation using 'mediate' in R with an interaction

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Merging by matching two columns

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Merging data.table and data.frame

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Metafor: How to integrate effectsizes?

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Metafor: Strange Trim and Fill Outcome?

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Metafor: forest plot for subset

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Miss lines in LaTex code generated by function xtable in R

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Mix of plain and italic text in ggplot categorical x-axis

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Mixed modelling and GLMM course in Banff, Canada

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Multiple Comparisons-Kruskal-Wallis-Test: kruskal{agricolae} and kruskalmc{pgirmess} don't yield the same results although they should do (?)

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Multiple regression in R

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Non-convergence in boot.stepAIC function with a logit model

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Nonparametric MANOVA

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Nonparametric MANOVA [RESOLVED]

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NppToR / RMySQL / loadNamespace() Error

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Old version of R base and additional packages

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Outlier Detection with k-Means

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POSIXct: subtle difference in representation leads to error for "+"

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POSIXct: subtle difference in representation leads to error for "+"

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Package 'compositions' and R-3.1.0

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Package 'dnet' for omics data integrative analysis

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Parsing XML file to data frame

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Particular case of a factorial experiment

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Pb

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Pearson III distribution

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Piecewise Aggregate Approximation in r

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Plot regression results with various predictors.

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Plotly and rOpenSci: R and ggplot2 interactive, online, & collaborative plotting

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Plotting a Regression holding some exogeneous constant.

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Post-hoc tests on linear mixed model give mixed results.

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Precedence and parentheses

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Problem Creating Partial Dependence Plot

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Problem with R "density" function

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Problem with products in R ?

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Problem with sample session

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Put short string labels vertically near tick marks on bottom axis

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Put short string labels vertically near tick marks on bottom axis

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Hurr Put short string labels vertically near tick marks on bottom axis May 13, 2014 Jim Lemon Put short string labels vertically near tick marks on bottom axis May 13, 2014 David Winsemius Put short string labels vertically near tick marks on bottom axis May 13, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 13, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 13, 2014 Jim Lemon Put short string labels vertically near tick marks on bottom axis May 13, 2014 David Winsemius Put short string labels vertically near tick marks on bottom axis May 13, 2014 Jim Lemon Put short string labels vertically near tick marks on bottom axis May 13, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 13, 2014 David Winsemius Put short string labels vertically near tick marks on bottom axis May 13, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 14, 2014 Frede Aakmann Tøgersen Put short string labels vertically near tick marks on bottom axis May 14, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 14, 2014 arun Put short string labels vertically near tick marks on bottom axis May 14, 2014 Frede Aakmann Tøgersen Put short string labels vertically near tick marks on bottom axis May 14, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 14, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 14, 2014 Frede Aakmann Tøgersen Put short string labels vertically near tick marks on bottom axis May 14, 2014 arun Put short string labels vertically near tick marks on bottom axis May 14, 2014 Hurr Put short string labels vertically near tick marks on bottom axis May 14, 2014 Frede Aakmann Tøgersen Put short string labels vertically near tick marks on bottom axis May 14, 2014

Put short string labels vertically near tick marks on bottom axisis

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Question on Cluster Package, agnes() function

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Questions in R about optim( ) and optimize( )

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R / JMP interface

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R 3.1 changes to type.convert causing strings where I used to get numeric

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R License

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R Package making error

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R and GML data from the Canadian Goverment

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R equivalent functions of some EXCEL functions

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R for Android

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R save with encoding...

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RODBC and PosgreSQL problems

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Raising a vector to the power of elements of another vector

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Random Block

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Random forest proximity measure

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Redefine `[` for S3 class

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Resquest

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Retrieving the matched data frame from Matching?

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Return "TRUE" only for first match of values between matrix and vector.

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Return "TRUE" only for first match of values between matrix and vector.

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Revolutions blog: April roundup

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Rprintf not updating

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Rscript and roxygen error

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Running the cox model in R, through python or unix.

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S3 - how to implement "colnames<-"

6 msgs

SQL vs R

29 msgs

Saving the ouput data

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Scatter plot selection points

6 msgs

Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups

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Scoring a test set after clustering a training set

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Second axis on bottom of graph

34 msgs
Hurr Second axis on bottom of graph May 16, 2014 S Ellison Second axis on bottom of graph May 16, 2014 Hurr Second axis on bottom of graph May 16, 2014 S Ellison Second axis on bottom of graph May 16, 2014 Hurr Second axis on bottom of graph May 16, 2014 David L Carlson Second axis on bottom of graph May 16, 2014 Hurr Second axis on bottom of graph May 16, 2014 David Winsemius Second axis on bottom of graph May 16, 2014 S Ellison Second axis on bottom of graph May 16, 2014 Hurr Second axis on bottom of graph May 18, 2014 Jim Lemon Second axis on bottom of graph May 18, 2014 Hurr Second axis on bottom of graph May 18, 2014 Jim Lemon Second axis on bottom of graph May 19, 2014 Hurr Second axis on bottom of graph May 19, 2014 Jim Lemon Second axis on bottom of graph May 19, 2014 Hurr Second axis on bottom of graph May 20, 2014 Hurr Second axis on bottom of graph May 20, 2014 Peter Dalgaard Second axis on bottom of graph May 20, 2014 Hurr Second axis on bottom of graph May 20, 2014 Peter Dalgaard Second axis on bottom of graph May 20, 2014 Hurr Second axis on bottom of graph May 21, 2014 Hurr Second axis on bottom of graph May 21, 2014 Sarah Goslee Second axis on bottom of graph May 21, 2014 Hurr Second axis on bottom of graph May 22, 2014 Jeff Newmiller Second axis on bottom of graph May 22, 2014 Hurr Second axis on bottom of graph May 24, 2014 Jim Lemon Second axis on bottom of graph May 24, 2014 Hurr Second axis on bottom of graph May 24, 2014 David Winsemius Second axis on bottom of graph May 26, 2014 Hurr Second axis on bottom of graph May 27, 2014 Jeff Newmiller Second axis on bottom of graph May 27, 2014 Hurr Second axis on bottom of graph May 28, 2014 Frede Aakmann Tøgersen Second axis on bottom of graph May 28, 2014 Hurr Second axis on bottom of graph May 28, 2014

Seeking well-commented versions of mgcv source code

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Simulative data production

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Size of win.metafile

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Sizeplot Legend

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Skipping .Rd files and using Org-mode instead?

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Smoothed HR for interaction term in coxph model

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Spatial Quantile Regression: Extracting residuals

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Splitting vector elements

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Subset, period of days like one after another in a group

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Subsets of a function

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Summary to data frame in R!!

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Testing parallel regression assumption

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The Future of R | API to Public Databases

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Tick marks at the 0:0 point in a plot ()

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Time Series

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Tobit model with L1 and L2 penalties (elastic net)

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Tobit model with panel data

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Tukey "no factors"

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Unable to load a file: no such file or directory

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Unbalanced manova

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Understanding power analysis in glm and binomial proportion test

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Unsubscribe mailing list

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Using apply with more than one matrix

7 msgs

Using centers of hierarchical clustering for k-means

4 msgs

Using unbalanced-learning algorithms in the randomForest

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Using unbalanced-learning algorithms in the randomForest package.

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VBA

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Variance of predictions from lme4 models at existing levels?

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Variation Inflation factor for GLS

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Voronoi-Diagrams in R

11 msgs

WG: vars or plm package? bivariate VAR

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WGCNA on heterogeneous RNA-seq

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Waldtest and different sample sizes

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Warning Message: In saveSWF({ : the executablepng2swf.exedoes not exist!

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Why are integers coded as e.g. "2L" in R functions?

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Writing to gzcon with rawConnection

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XML pkg. Namespace message

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Zip multiple files with same prefix?

3 msgs

Zoo: How to match secondary Y-axis ticks to primary ones

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\ escape sequence and windows path

18 msgs

accessing C code from a base package within a function

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account

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adding rows

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approxfun question

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as.character(quote(x$y) ) = "$" "x" "y" not "x$y"?

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as.character(quote(x$y) ) = "$" "x" "y" not "x$y"?

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auglag store parameters

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bin a vector of continuous variables

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bootstrapping for maxium data

4 msgs

boxplot axis font size

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can we add raw data to data frame

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changing x-axis in plot

3 msgs

clipart - box with rounded corners?

8 msgs

conversion error from numeric to factor in raster: Error in 1:ncol(r) : argument of length 0, r command: as.factor()

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converting a data.frame into a different table

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converting a matrix to array

4 msgs

could I smooth the geom_line output on ggplot2?

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create dataframe using structure ()

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create line chart from data.frame

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create new rows with 0, if nessecary

4 msgs

creating multiple orthogonal plans

1 msg

cumulative frequency distribution combined with histogram in one plot at two different scales

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data frame sample

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data presentation -curve

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dbFD function in FD package

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dealing with missing values

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decision curve analysis

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density in hist does not come as 1

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dev-lang/R-3.1.0: biocLite("vsn") removes all files in /

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dist like function but where you can configure the method

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efficient sine interpolation

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empty density plot for point pattern in spatstat

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equivalent of R CMD BATCH --vanilla for those who can't do anything non-GUI?

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error in mixed logit model using mlogit function

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error in r

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error using polymars argument

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extract duplications from list

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extracting the first few eigenvectors

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filename of current device

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find an empty char in the name of a vector

4 msgs

for loop using index values

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function to compare lengths of objects?

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function to compare lengths?

3 msgs

ggplot barplot error

4 msgs

group by and merge two dataframes

6 msgs

gumbel distribution

12 msgs

help

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help me

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help using extrafont package | R graphics

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help with xts

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how di I write a for loop in which i is in POSIX?

3 msgs

how to access an executing environment?

3 msgs

how to add a table under a plot?

5 msgs

how to change the order of subgroups in forest plot using meta

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how to extract a part of objects from list ?

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how to make R plot under Linux

6 msgs

identifying odd or even number

1 msg

implementation for genetic algorithm

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install sann package in R R version 3.0.3

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interrogating webdatapage

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invalid digital signature for R-3.1.0-mavericks

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knitr - Highlight code/output

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legendre quadrature

4 msgs

level for confint (nls)

2 msgs

list.files accessing subdirectory as relative path?

4 msgs

logLik in betareg()

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lognormal frailey

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lognormal frailty in frailtypack

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looking at C code from the stats package

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manual installation errors; install.package, R CMD

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matafor package: adding additional information under a forest plot

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matrix column division by vector

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metaMDS in vegan: zero stress

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mgcv gam bs=re questions

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minor tick marks on boxplot log scale

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missing return

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mle together with pnorm

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model selection for nested factorial design

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multiple colour to symbols using brkdn.plot()

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multiply of two expressions

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needs help in augented plot

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nested design

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neural network in R

1 msg

nls() help please

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outer() problem

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overdispersed zero inflated continuous data

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package for 'positive' incremental AUC determination?

1 msg

package to plot mean and standard deviation directly on data

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panel data: variable selection AND multicollinearity

1 msg

partykit ctree: minbucket and case weights

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plotting lines on old graph after par(new=TRUE)

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problem importing apparently common txt files

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problem in r-code

2 msgs

problem solved in augented plot

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program

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quartz() and windows()

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question about wfct in minpack.lm package

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rJava fail

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randomForestSRC 1.5.0 is on CRAN

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recall variable in a loop

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recode the ID with sequential order of a dataset

1 msg

reference category in binomal glm

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referencing a data frame with a pointer, link, alias, etc

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regexec: Unexpected answer when matching digits

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remove duplicated row according to NA condition

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row mean

4 msgs

roxygen2 question

1 msg

saveSWF Error Message: file association not available or invalid

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seeking latex peace

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select randomly from a list

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set axis limit in lattice

3 msgs

slow with indexing with is.na

1 msg

snpStats reference allele used in genetic associations?

5 msgs

solution for r-help to the problem of yahoo addresses bouncing?

3 msgs

solve scalar linear equation

8 msgs

speeding up applying hist() over rows of a matrix

4 msgs

split string and count

1 msg

stabilitytest dse package

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stop a function

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stop subscribing mailing list

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subsetting to exclude different values for each subject in study

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subsetting to exclude different values for each subject in study

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substring if a record has a "\"

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substring if value starts with a character

4 msgs

survival estimates for covariate values

2 msgs

syntax for MANOVA (& factor labeling)

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timedep in frailtypack

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tk2listbox

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transition from depends to imports

5 msgs

uGARCHspec function

1 msg

unable to collate and parse R files for package -- unexpected end of input

4 msgs

uniform number

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using animation with persp

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using asList with lme4 object

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using model coefficients on a new data set

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variable length lisin in data frame

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x & y distances based on great circle

1 msg