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R-SIG-mixed-models September 2009

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Calculating SE from GLMM results (using glmer{lme4})

4 msgs
Raldo Kruger Calculating SE from GLMM results (using glmer{lme4}) Sep 23, 2009 Ben Bolker Calculating SE from GLMM results (using glmer{lme4}) Sep 24, 2009 Raldo Kruger Calculating SE from GLMM results (using glmer{lme4}) Sep 26, 2009 Ben Bolker Calculating SE from GLMM results (using glmer{lme4}) Sep 27, 2009

Correlation structure in lmer function

2 msgs
FMH Correlation structure in lmer function Sep 17, 2009 ONKELINX, Thierry Correlation structure in lmer function Sep 17, 2009

Data sheet notation and model structure for GLMM with 3 non-factorial factors

5 msgs
Raldo Kruger Data sheet notation and model structure for GLMM with 3 non-factorial factors Sep 23, 2009 Douglas Bates Data sheet notation and model structure for GLMM with 3 non-factorial factors Sep 24, 2009 Raldo Kruger Data sheet notation and model structure for GLMM with 3 non-factorial factors Sep 26, 2009 Douglas Bates Data sheet notation and model structure for GLMM with 3 non-factorial factors Sep 26, 2009 Raldo Kruger Data sheet notation and model structure for GLMM with 3 non-factorial factors Sep 26, 2009

Error in documentation of lmer?

2 msgs
Lyman, Mark Error in documentation of lmer? Sep 18, 2009 Douglas Bates Error in documentation of lmer? Sep 18, 2009

Error message with lme

3 msgs
FMH Error message with lme Sep 9, 2009 Douglas Bates Error message with lme Sep 9, 2009 FMH Error message with lme Sep 14, 2009

Error message with lme function

2 msgs
FMH Error message with lme function Sep 15, 2009 ONKELINX, Thierry Error message with lme function Sep 15, 2009

Estimate confidence intervals for a linear combination of coefficients for a GLS model. Something similar to ESTIMABLE function from gmodels package??

1 msg
Maria Jose Juan Jorda Estimate confidence intervals for a linear combination of coefficients for a GLS model. Something similar to ESTIMABLE function from gmodels package?? Sep 29, 2009

Examples for speed comparisons in fitting linear mixed-effects models

1 msg
Douglas Bates Examples for speed comparisons in fitting linear mixed-effects models Sep 24, 2009

Fitting a fixed effect model while modelling correlation in the residuals in 2 directions

3 msgs
Thomas Bishop Fitting a fixed effect model while modelling correlation in the residuals in 2 directions Sep 14, 2009 Adam D. I. Kramer Fitting a fixed effect model while modelling correlation in the residuals in 2 directions Sep 14, 2009 Ben Bolker Fitting a fixed effect model while modelling correlation in the residuals in 2 directions Sep 15, 2009

Help with glmer {lme4} function: how to return F or t statistics instead of z statistics?

1 msg
Ben Bolker Help with glmer {lme4} function: how to return F or t statistics instead of z statistics? Sep 13, 2009

Help with glmer {lme4} function: how to return F or t statistics instead of z statistics?

2 msgs
Raldo Kruger Help with glmer {lme4} function: how to return F or t statistics instead of z statistics? Sep 13, 2009 Will Morris Help with glmer {lme4} function: how to return F or t statistics instead of z statistics? Sep 13, 2009

How many groups is enough

1 msg
Graham Leask How many groups is enough Sep 1, 2009

How to define the fixed and random effects in lmer

5 msgs
FMH How to define the fixed and random effects in lmer Sep 15, 2009 Ben Bolker How to define the fixed and random effects in lmer Sep 15, 2009 FMH How to define the fixed and random effects in lmer Sep 15, 2009 Luca Borger How to define the fixed and random effects in lmer Sep 15, 2009 FMH How to define the fixed and random effects in lmer Sep 16, 2009

I'm sorry, and here is what I mean to ask about speed

6 msgs
Paul Johnson I'm sorry, and here is what I mean to ask about speed Sep 23, 2009 Steven McKinney I'm sorry, and here is what I mean to ask about speed Sep 23, 2009 Ken Beath I'm sorry, and here is what I mean to ask about speed Sep 23, 2009 Douglas Bates I'm sorry, and here is what I mean to ask about speed Sep 23, 2009 Doran, Harold I'm sorry, and here is what I mean to ask about speed Sep 24, 2009 Douglas Bates I'm sorry, and here is what I mean to ask about speed Sep 24, 2009

More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables?

19 msgs
Paul Johnson More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 22, 2009 Tobias Verbeke More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Kevin Wright More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Douglas Bates More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Douglas Bates More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Ben Bolker More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Ben Bolker More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Peter Dalgaard More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Peter Dalgaard More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Douglas Bates More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Douglas Bates More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Kevin Wright More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Douglas Bates More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Adam D. I. Kramer More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Emmanuel Charpentier More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Emmanuel Charpentier More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Kevin Wright More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Gabor Grothendieck More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009 Ben Bolker More naive questions: Speed comparisons? what is a "stack imbalance" in lmer? does lmer center variables? Sep 23, 2009

More naive questions: Speed comparisons? what is a"stack imbalance" in lmer? does lmer center variables?

1 msg
Doran, Harold More naive questions: Speed comparisons? what is a"stack imbalance" in lmer? does lmer center variables? Sep 23, 2009

Phylogenetic meta-analysis and setting animal variable in MCMCglmm

2 msgs
Dawson Wayne Phylogenetic meta-analysis and setting animal variable in MCMCglmm Sep 18, 2009 Jarrod Hadfield Phylogenetic meta-analysis and setting animal variable in MCMCglmm Sep 18, 2009

Problem with correlation structure in lme

5 msgs
Jonathan Myers Problem with correlation structure in lme Sep 21, 2009 ONKELINX, Thierry Problem with correlation structure in lme Sep 22, 2009 Jonathan Myers Problem with correlation structure in lme Sep 22, 2009 ONKELINX, Thierry Problem with correlation structure in lme Sep 22, 2009 Jonathan Myers Problem with correlation structure in lme Sep 22, 2009

Problems with formula for highly pseudoreplicate mixed-effects system

1 msg
Matthias Gralle Problems with formula for highly pseudoreplicate mixed-effects system Sep 17, 2009

Problems with formula for highly pseudoreplicatemixed-effects system

2 msgs
David Duffy Problems with formula for highly pseudoreplicatemixed-effects system Sep 17, 2009 Matthias Gralle Problems with formula for highly pseudoreplicatemixed-effects system Sep 17, 2009

R-sig-mixed-models Digest, Vol 33, Issue 23

1 msg
Iasonas Lamprianou R-sig-mixed-models Digest, Vol 33, Issue 23 Sep 22, 2009

REML and LRT

1 msg
Viechtbauer Wolfgang (STAT) REML and LRT Sep 8, 2009

Repeated measures for unbalanced data in R

2 msgs
Manuel Spínola Repeated measures for unbalanced data in R Sep 16, 2009 Adam D. I. Kramer Repeated measures for unbalanced data in R Sep 16, 2009

Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics

1 msg
ledonret at email.unc.edu Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009

Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics

2 msgs
ledonret at email.unc.edu Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009 ledonret at email.unc.edu Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009

Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics

3 msgs
Andrew Dolman Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009 Andrew Dolman Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009 Douglas Bates Specifying Crossed vs. Nested Factors with Lmer and bootstrapping downstream statistics Sep 9, 2009

Warning message with lmer function

3 msgs
FMH Warning message with lmer function Sep 16, 2009 Ken Beath Warning message with lmer function Sep 16, 2009 ONKELINX, Thierry Warning message with lmer function Sep 16, 2009

Within-group correlation matrix in nlme

1 msg
Bruno ERNANDE Within-group correlation matrix in nlme Sep 15, 2009

amer: generalized additive mixed models with lme4

1 msg
Fabian Scheipl amer: generalized additive mixed models with lme4 Sep 1, 2009

correlation structure with AR(1)

3 msgs
FMH correlation structure with AR(1) Sep 3, 2009 Ben Bolker correlation structure with AR(1) Sep 3, 2009 Ben Bolker correlation structure with AR(1) Sep 4, 2009

fitted values for logit models using glmer

1 msg
Malcolm Fairbrother fitted values for logit models using glmer Sep 1, 2009

interpreting Std. error from glmer output

5 msgs
Christine Griffiths interpreting Std. error from glmer output Sep 15, 2009 Will Morris interpreting Std. error from glmer output Sep 15, 2009 Will Morris interpreting Std. error from glmer output Sep 15, 2009 Christine Griffiths interpreting Std. error from glmer output Sep 15, 2009 ONKELINX, Thierry interpreting Std. error from glmer output Sep 16, 2009

literature suggestions regarding residuals in mixed models

1 msg
Juliet Hannah literature suggestions regarding residuals in mixed models Sep 11, 2009

lmList in the nlme package [Was Re: Please reply me]

1 msg
Douglas Bates lmList in the nlme package [Was Re: Please reply me] Sep 20, 2009

lme vs. lm subset argument behaviour

3 msgs
Tobias Verbeke lme vs. lm subset argument behaviour Sep 10, 2009 Tobias Verbeke lme vs. lm subset argument behaviour Sep 10, 2009 Douglas Bates lme vs. lm subset argument behaviour Sep 11, 2009

lme vs. lmer

12 msgs
Christopher David Desjardins lme vs. lmer Sep 29, 2009 Ben Bolker lme vs. lmer Sep 29, 2009 Christopher David Desjardins lme vs. lmer Sep 29, 2009 Douglas Bates lme vs. lmer Sep 29, 2009 Douglas Bates lme vs. lmer Sep 29, 2009 Ben Bolker lme vs. lmer Sep 29, 2009 Peter Dalgaard lme vs. lmer Sep 29, 2009 Douglas Bates lme vs. lmer Sep 29, 2009 Raldo Kruger lme vs. lmer Sep 30, 2009 Christopher David Desjardins lme vs. lmer Sep 30, 2009 Douglas Bates lme vs. lmer Sep 30, 2009 Raldo Kruger lme vs. lmer Sep 30, 2009

lme vs. lmer and contrasts

2 msgs
espesser lme vs. lmer and contrasts Sep 30, 2009 Nicholas Lewin-Koh lme vs. lmer and contrasts Sep 30, 2009

lme4 mcmcsamp workaround?

1 msg
Michael Erickson lme4 mcmcsamp workaround? Sep 8, 2009

lme4 under 64 bit (Snow Leopard)

5 msgs
Michael Kubovy lme4 under 64 bit (Snow Leopard) Sep 14, 2009 Steve Lianoglou lme4 under 64 bit (Snow Leopard) Sep 14, 2009 Will Morris lme4 under 64 bit (Snow Leopard) Sep 14, 2009 Peter Dalgaard lme4 under 64 bit (Snow Leopard) Sep 15, 2009 David Winsemius lme4 under 64 bit (Snow Leopard) Sep 15, 2009

lme4 web application

1 msg
Jeroen lme4 web application Sep 14, 2009

longitudinal analysis using lmer?

1 msg
Murray Jorgensen longitudinal analysis using lmer? Aug 31, 2009

mixed effects model in lme

1 msg
ONKELINX, Thierry mixed effects model in lme Sep 21, 2009

need help in R program

1 msg
hello bye need help in R program Sep 30, 2009

need help in glm

3 msgs
hossain zamani need help in glm Sep 29, 2009 Nicholas Lewin-Koh need help in glm Sep 29, 2009 Ben Bolker need help in glm Sep 29, 2009

odd numbers in output from gls

1 msg
Timothy_Handley at nps.gov odd numbers in output from gls Sep 16, 2009

p-value for glmer with quasipoisson family

2 msgs
Raldo Kruger p-value for glmer with quasipoisson family Sep 29, 2009 CL Pressland p-value for glmer with quasipoisson family Sep 29, 2009

p-value for the fixed effect

3 msgs
FMH p-value for the fixed effect Sep 17, 2009 ONKELINX, Thierry p-value for the fixed effect Sep 17, 2009 Patrick Onyango p-value for the fixed effect Sep 17, 2009

please reply

2 msgs
mino rezayi please reply Sep 20, 2009 Douglas Bates please reply Sep 21, 2009

question about lmer versus lme and evaluation of estimates of random parameters

1 msg
Paul Johnson question about lmer versus lme and evaluation of estimates of random parameters Sep 17, 2009

ranef, plot and dotplot in lmer and lme

1 msg
Dunbar, Michael ranef, plot and dotplot in lmer and lme Sep 22, 2009

standar error for the fixed effects

4 msgs
FMH standar error for the fixed effects Sep 24, 2009 Ken Beath standar error for the fixed effects Sep 24, 2009 FMH standar error for the fixed effects Sep 24, 2009 Ken Beath standar error for the fixed effects Sep 24, 2009

year and site

7 msgs
Andrew J Tyre year and site Sep 26, 2009 Will Morris year and site Sep 26, 2009 Hadley Wickham year and site Sep 26, 2009 Douglas Bates year and site Sep 26, 2009 Andrew J Tyre year and site Sep 26, 2009 Hadley Wickham year and site Sep 26, 2009 Will Morris year and site Sep 26, 2009

zero inflated and spatial autocorrelation

2 msgs
Alexandre VILLERS zero inflated and spatial autocorrelation Sep 23, 2009 Highland Statistics Ltd zero inflated and spatial autocorrelation Sep 23, 2009