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R-SIG-mixed-models January 2011

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Using lme4 to predict probability of appendicitis
1 msg
Logistic regression with spatial autocorrelation structure
7 msgs
Arnaud Mosnier Logistic regression with spatial autocorrelation structure Jan 17, 2011
Ben Bolker Logistic regression with spatial autocorrelation structure Jan 17, 2011
Douglas Bates Logistic regression with spatial autocorrelation structure Jan 17, 2011
Arnaud Mosnier Logistic regression with spatial autocorrelation structure Jan 17, 2011
Dale Steele Logistic regression with spatial autocorrelation structure Jan 31, 2011
Dale.W.Steele at gmail.com Using lme4 to predict probability of appendicitis Jan 31, 2011
Gavin Simpson Using lme4 to predict probability of appendicitis Jan 31, 2011
MCMCglmm and contrasts
3 msgs
Szymek Drobniak MCMCglmm and contrasts Jan 8, 2011
Jarrod Hadfield MCMCglmm and contrasts Jan 29, 2011
Szymek Drobniak MCMCglmm and contrasts Jan 29, 2011
How to usepriors in MCMCglmm?
4 msgs
Szymek Drobniak How to usepriors in MCMCglmm? Jan 8, 2011
Jarrod Hadfield How to usepriors in MCMCglmm? Jan 29, 2011
Jarrod Hadfield How to usepriors in MCMCglmm? Jan 29, 2011
Szymek Drobniak How to usepriors in MCMCglmm? Jan 29, 2011
MCMCglmm specification
2 msgs
Ray Danner MCMCglmm specification Jan 26, 2011
Jarrod Hadfield MCMCglmm specification Jan 29, 2011
Is it possible to weight residuals in MCMCglmm?
2 msgs
Szymek Drobniak Is it possible to weight residuals in MCMCglmm? Jan 24, 2011
Jarrod Hadfield Is it possible to weight residuals in MCMCglmm? Jan 29, 2011
help with ordinal MCMCglmm
2 msgs
Achaz von Hardenberg help with ordinal MCMCglmm Jan 21, 2011
Jarrod Hadfield help with ordinal MCMCglmm Jan 29, 2011
lme4 and GLMMs: distribution choice (Gamma) and random effects syntax problems
2 msgs
Roslyn Anderson lme4 and GLMMs: distribution choice (Gamma) and random effects syntax problems Jan 28, 2011
Ben Bolker lme4 and GLMMs: distribution choice (Gamma) and random effects syntax problems Jan 28, 2011
nested factor
3 msgs
DUYME Florent nested factor Jan 19, 2011
Iker Vaquero Alba nested factor Jan 19, 2011
Douglas Bates nested factor Jan 27, 2011
p values through resampling?
2 msgs
Malcolm Fairbrother p values through resampling? Jan 27, 2011
Greg Snow p values through resampling? Jan 27, 2011
ar(1) differences understood
1 msg
Paul Chatfield ar(1) differences understood Jan 26, 2011
ar (1) with data and output inline
2 msgs
Paul Chatfield ar (1) with data and output inline Jan 26, 2011
Ben Bolker ar (1) with data and output inline Jan 26, 2011
Measure of influence for lmer models
3 msgs
Jenn Barrett Measure of influence for lmer models Jan 21, 2011
Dennis Murphy Measure of influence for lmer models Jan 21, 2011
Jenn Barrett Measure of influence for lmer models Jan 25, 2011
ar(1) model
1 msg
Paul Chatfield ar(1) model Jan 25, 2011
ar(1)
1 msg
Paul Chatfield ar(1) Jan 25, 2011
glmmPQL simplification
7 msgs
Iker Vaquero Alba glmmPQL simplification Jan 22, 2011
David Duffy glmmPQL simplification Jan 22, 2011
Toby Marthews glmmPQL simplification Jan 22, 2011
Iker Vaquero Alba glmmPQL simplification Jan 23, 2011
Ben Bolker glmmPQL simplification Jan 23, 2011
Iker Vaquero Alba glmmPQL simplification Jan 23, 2011
Ben Bolker glmmPQL simplification Jan 23, 2011
TRADUCING lmer() syntax into lme()
1 msg
Federico Bonofiglio TRADUCING lmer() syntax into lme() Jan 23, 2011
lmer predicted and fitted values differ
1 msg
Robin Jeffries lmer predicted and fitted values differ Jan 22, 2011
confidence intervals in lmer
2 msgs
Rachel Cohen confidence intervals in lmer Jan 22, 2011
Jonathan Baron confidence intervals in lmer Jan 22, 2011
TRADUCING lmer() syntax into lme()
2 msgs
Freddy Gamma TRADUCING lmer() syntax into lme() Jan 20, 2011
Freddy Gamma TRADUCING lmer() syntax into lme() Jan 21, 2011
glmmADMB probelm
2 msgs
Thomas Merkling glmmADMB probelm Jan 21, 2011
Ben Bolker glmmADMB probelm Jan 21, 2011
overdispersion estimation in a binomial GLMM
5 msgs
Thomas Merkling overdispersion estimation in a binomial GLMM Jan 20, 2011
espesser overdispersion estimation in a binomial GLMM Jan 20, 2011
Ben Bolker overdispersion estimation in a binomial GLMM Jan 20, 2011
Thomas Merkling overdispersion estimation in a binomial GLMM Jan 21, 2011
Ben Bolker overdispersion estimation in a binomial GLMM Jan 21, 2011
'fixed' covariates in nlmer
1 msg
Laurent Gentzbittel 'fixed' covariates in nlmer Jan 21, 2011
VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.)
6 msgs
Toby Marthews VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
ONKELINX, Thierry VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
Andrew Dolman VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
Iker Vaquero Alba VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
Andrew Dolman VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
Rolf Turner VERY simple question about NESTING in experimental designs (for glm, lme, lmer, etc.) Jan 20, 2011
Using lme4 to constrain level 1 residual variance to zero in MVML regression model
1 msg
Jaime Peterson Using lme4 to constrain level 1 residual variance to zero in MVML regression model Jan 20, 2011
What to do when a factor term has several p values?
2 msgs
Toby Marthews What to do when a factor term has several p values? Jan 20, 2011
Greg Snow What to do when a factor term has several p values? Jan 20, 2011
Random factor and MANOVA
1 msg
Aitor Larrañaga Random factor and MANOVA Jan 19, 2011
nlmer queries
1 msg
remy.van.de.ven at industry.nsw.gov.au nlmer queries Jan 18, 2011
specifying two error terms in random effects ANOVA
1 msg
Joshua Wiley specifying two error terms in random effects ANOVA Jan 18, 2011
plotting residuals vs. fitted values by group
3 msgs
Rachel Cohen plotting residuals vs. fitted values by group Jan 18, 2011
Ben Bolker plotting residuals vs. fitted values by group Jan 18, 2011
Douglas Bates plotting residuals vs. fitted values by group Jan 18, 2011
'fixed' covariates in nlmer
1 msg
Christopher Philipson 'fixed' covariates in nlmer Jan 18, 2011
nlme Error message
1 msg
Andrew Close nlme Error message Jan 18, 2011
analysis strategy - baseline and repeated measure
1 msg
array chip analysis strategy - baseline and repeated measure Jan 17, 2011
Alternatives to lmer
6 msgs
Iker Vaquero Alba Alternatives to lmer Jan 16, 2011
Murray Jorgensen Alternatives to lmer Jan 16, 2011
Murray Jorgensen Alternatives to lmer Jan 16, 2011
Iker Vaquero Alba Alternatives to lmer Jan 16, 2011
Murray Jorgensen Alternatives to lmer Jan 16, 2011
Iker Vaquero Alba Alternatives to lmer Jan 17, 2011
Alternatives to lmer
1 msg
Iker Vaquero Alba Alternatives to lmer Jan 16, 2011
glmmADMB package
7 msgs
Thomas Merkling glmmADMB package Jan 14, 2011
Dennis Murphy glmmADMB package Jan 14, 2011
Ben Bolker glmmADMB package Jan 14, 2011
Ben Bolker glmmADMB package Jan 14, 2011
Thomas Merkling glmmADMB package Jan 14, 2011
dave fournier glmmADMB package Jan 15, 2011
Ben Bolker glmmADMB package Jan 15, 2011
Using nlme package in an information-theoretic framework, AIC
2 msgs
Gustaf Granath Using nlme package in an information-theoretic framework, AIC Jan 12, 2011
Douglas Bates Using nlme package in an information-theoretic framework, AIC Jan 14, 2011
glmmADMB package
1 msg
Szymek Drobniak glmmADMB package Jan 14, 2011
variance-covariance matrix of the estimations of the variance-covariance matrix of the random effects
2 msgs
Resche Rigon Matthieu variance-covariance matrix of the estimations of the variance-covariance matrix of the random effects Jan 13, 2011
Douglas Bates variance-covariance matrix of the estimations of the variance-covariance matrix of the random effects Jan 14, 2011
lme4 convergence problem
1 msg
Jens Åström lme4 convergence problem Jan 14, 2011
lme4 convergence problem
3 msgs
Murray Jorgensen lme4 convergence problem Jan 13, 2011
Douglas Bates lme4 convergence problem Jan 13, 2011
Douglas Bates lme4 convergence problem Jan 13, 2011
helps in data analysis
1 msg
Steve Hong helps in data analysis Jan 13, 2011
Matrix not symmetric
2 msgs
Iker Vaquero Alba Matrix not symmetric Jan 12, 2011
Iker Vaquero Alba Matrix not symmetric Jan 13, 2011
GLM,GLMM,CAIC,mcmcGLMM - AIC model selction
3 msgs
Chris Mcowen GLM,GLMM,CAIC,mcmcGLMM - AIC model selction Jan 13, 2011
Andrew Kosydar GLM,GLMM,CAIC,mcmcGLMM - AIC model selction Jan 13, 2011
Chris Mcowen GLM,GLMM,CAIC,mcmcGLMM - AIC model selction Jan 13, 2011
R-sig-mixed-models Digest, Vol 49, Issue 21
1 msg
Iker Vaquero Alba R-sig-mixed-models Digest, Vol 49, Issue 21 Jan 13, 2011
Problems with arm examples scripts
1 msg
Murray Jorgensen Problems with arm examples scripts Jan 12, 2011
Matrix not symmetric
1 msg
Iker Vaquero Alba Matrix not symmetric Jan 12, 2011
Error message in ordinal() package running cumulative link mixed models function clmm()
3 msgs
Sverre Stausland Error message in ordinal() package running cumulative link mixed models function clmm() Jan 11, 2011
Rune Haubo Error message in ordinal() package running cumulative link mixed models function clmm() Jan 12, 2011
Sverre Stausland Error message in ordinal() package running cumulative link mixed models function clmm() Jan 12, 2011
Function sim() from the arm package
2 msgs
Murray Jorgensen Function sim() from the arm package Jan 11, 2011
David Atkins Function sim() from the arm package Jan 11, 2011
design matrix for mixed effects model
2 msgs
Andreas Böck design matrix for mixed effects model Jan 10, 2011
Douglas Bates design matrix for mixed effects model Jan 11, 2011
lmer and post-hoc testing
2 msgs
SHONA MARY LESLIE lmer and post-hoc testing Jan 10, 2011
ONKELINX, Thierry lmer and post-hoc testing Jan 11, 2011
Question about likelihood ratio test and nested models
3 msgs
Xiao He Question about likelihood ratio test and nested models Jan 10, 2011
Xiao He Question about likelihood ratio test and nested models Jan 10, 2011
David Duffy Question about likelihood ratio test and nested models Jan 10, 2011
Data snooping in repeated measures study?
3 msgs
Steven McKinney Data snooping in repeated measures study? Jan 7, 2011
Dennis Murphy Data snooping in repeated measures study? Jan 8, 2011
Prew, Paul Data snooping in repeated measures study? Jan 10, 2011
design matrix for mixed effects model
2 msgs
Wade Wall design matrix for mixed effects model Jan 7, 2011
Douglas Bates design matrix for mixed effects model Jan 10, 2011
design matrix for mixed effects model
1 msg
Carina Salt design matrix for mixed effects model Jan 10, 2011
GLMM with overdispersion and Wald test
2 msgs
tmerklin at cict.fr GLMM with overdispersion and Wald test Jan 7, 2011
ONKELINX, Thierry GLMM with overdispersion and Wald test Jan 10, 2011
Data snooping in repeated measures study?
2 msgs
Prew, Paul Data snooping in repeated measures study? Jan 7, 2011
Afshartous, David Data snooping in repeated measures study? Jan 8, 2011
R code for mixed models in crossover trials
1 msg
Neroli O'Toole R code for mixed models in crossover trials Jan 7, 2011
Mixed-model-binary logistic model with dependence between individual repeated measures
10 msgs
Anna Ekman Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Ben Bolker Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Anna Ekman Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Ben Bolker Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Martin Maechler Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Ben Pelzer Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Gavin Simpson Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Jarrod Hadfield Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
Ben Bolker Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
David Duffy Mixed-model-binary logistic model with dependence between individual repeated measures Jan 7, 2011
over-dispersed Poisson and glmer / MCMCglmm
1 msg
David Atkins over-dispersed Poisson and glmer / MCMCglmm Jan 7, 2011
Mixed-model polytomous ordered logistic [SEC=Unclassified]
1 msg
Steve Candy Mixed-model polytomous ordered logistic [SEC=Unclassified] Jan 6, 2011
Mixed-model polytomous ordered logistic
1 msg
Alan Cobo-Lewis Mixed-model polytomous ordered logistic Jan 6, 2011
lmer() - no applicable method for 'profile'
2 msgs
sam steyaert lmer() - no applicable method for 'profile' Jan 6, 2011
Ben Bolker lmer() - no applicable method for 'profile' Jan 6, 2011
reference category in a mixed- effect model.
1 msg
Anna-Marie_Benson at fws.gov reference category in a mixed- effect model. Jan 5, 2011
Mixed-model polytomous ordered logistic [Sec=Unclassified]
1 msg
Steve Candy Mixed-model polytomous ordered logistic [Sec=Unclassified] Jan 5, 2011
NAs in fixed effects
2 msgs
Henrik Thurfjell NAs in fixed effects Jan 5, 2011
David Duffy NAs in fixed effects Jan 5, 2011
Mixed-model polytomous ordered logistic regression ?
5 msgs
Rune Haubo Mixed-model polytomous ordered logistic regression ? Jan 3, 2011
Emmanuel Charpentier Mixed-model polytomous ordered logistic regression ? Jan 3, 2011
Ken Knoblauch Mixed-model polytomous ordered logistic regression ? Jan 4, 2011
Rune Haubo Mixed-model polytomous ordered logistic regression ? Jan 4, 2011
David Duffy Mixed-model polytomous ordered logistic regression ? Jan 4, 2011
parameters that are nonlinear functions of covariates
1 msg
Steve P Verrill parameters that are nonlinear functions of covariates Jan 4, 2011
Using nlme package in an information-theoretic framework, AIC
3 msgs
Corey VanStratt Using nlme package in an information-theoretic framework, AIC Jan 4, 2011
Ben Bolker Using nlme package in an information-theoretic framework, AIC Jan 4, 2011
John Maindonald Using nlme package in an information-theoretic framework, AIC Jan 4, 2011
Posterior probability of attitude parameters in a Rasch model
3 msgs
Yvonnick Noel Posterior probability of attitude parameters in a Rasch model Jan 3, 2011
Doran, Harold Posterior probability of attitude parameters in a Rasch model Jan 3, 2011
Yvonnick Noel Posterior probability of attitude parameters in a Rasch model Jan 4, 2011
Does lmer have it's own random number generator?
6 msgs
Michael Lawrence Does lmer have it's own random number generator? Jan 2, 2011
ONKELINX, Thierry Does lmer have it's own random number generator? Jan 3, 2011
Douglas Bates Does lmer have it's own random number generator? Jan 3, 2011
Ken Knoblauch Does lmer have it's own random number generator? Jan 3, 2011
Michael Lawrence Does lmer have it's own random number generator? Jan 3, 2011
Ben Bolker Does lmer have it's own random number generator? Jan 3, 2011
Variance component models using lmer
3 msgs
Luciano La Sala Variance component models using lmer Jan 3, 2011
Douglas Bates Variance component models using lmer Jan 3, 2011
Luciano La Sala Variance component models using lmer Jan 3, 2011
Using nlme package in an information-theoretic framework, AIC
2 msgs
Corey VanStratt Using nlme package in an information-theoretic framework, AIC Jan 3, 2011
Ben Bolker Using nlme package in an information-theoretic framework, AIC Jan 3, 2011
false convergence error, with bonus
1 msg
Luca Borger false convergence error, with bonus Jan 3, 2011
Constraining level 1 error term to 0, Using multivariate multilevel regression modeling
1 msg
Jaime Peterson Constraining level 1 error term to 0, Using multivariate multilevel regression modeling Jan 3, 2011
lme4 to MCMCglmm
1 msg
ronggui lme4 to MCMCglmm Jan 2, 2011