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R-SIG-mixed-models May 2011

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Trouble fitting large nested models
2 msgs
Robert Sandbach Trouble fitting large nested models May 31, 2011
Douglas Bates Trouble fitting large nested models May 31, 2011
weights in MCMCglmm
1 msg
Joe King weights in MCMCglmm May 30, 2011
Question on mixed effects model syntax and lack of p-values in lme4 summary
2 msgs
Richard Friedman Question on mixed effects model syntax and lack of p-values in lme4 summary May 30, 2011
Dennis Murphy Question on mixed effects model syntax and lack of p-values in lme4 summary May 30, 2011
ordered multinomial mixed model
3 msgs
Thomas Mang ordered multinomial mixed model May 27, 2011
Rune Haubo ordered multinomial mixed model May 28, 2011
Thomas Mang ordered multinomial mixed model May 29, 2011
lme4 convergence/numerical issue with large sample 2 level logit
1 msg
Daniel Adkins lme4 convergence/numerical issue with large sample 2 level logit May 28, 2011
lme4 convergence/numerical issue with large sample 2 level logit
2 msgs
Daniel Adkins lme4 convergence/numerical issue with large sample 2 level logit May 27, 2011
Daniel Adkins lme4 convergence/numerical issue with large sample 2 level logit May 27, 2011
lmer p-value extraction: LanguageR S4 object error
5 msgs
Ben Bolker lmer p-value extraction: LanguageR S4 object error May 24, 2011 Daniel Zvirzdin lmer p-value extraction: LanguageR S4 object error May 27, 2011
Daniel Zvirzdin lmer p-value extraction: LanguageR S4 object error May 27, 2011
Cyrus Shaoul lmer p-value extraction: LanguageR S4 object error May 27, 2011
Daniel Zvirzdin lmer p-value extraction: LanguageR S4 object error May 27, 2011
lme4 convergence/numerical issue with large sample 2 level logit
3 msgs
Daniel Adkins lme4 convergence/numerical issue with large sample 2 level logit May 26, 2011
Douglas Bates lme4 convergence/numerical issue with large sample 2 level logit May 27, 2011
Daniel Adkins lme4 convergence/numerical issue with large sample 2 level logit May 27, 2011
Combining spatial and temporal correlation
1 msg
Highland Statistics Ltd Combining spatial and temporal correlation May 27, 2011
lmer versus glm results
5 msgs
Yuqing Ren lmer versus glm results May 25, 2011
Thomas Levine lmer versus glm results May 25, 2011
Yuqing Ren lmer versus glm results May 25, 2011
John Maindonald lmer versus glm results May 26, 2011
Yuqing Ren lmer versus glm results May 26, 2011
Combining spatial and temporal correlation structures - possible?
2 msgs
Jens Oldeland Combining spatial and temporal correlation structures - possible? May 26, 2011
Ben Bolker Combining spatial and temporal correlation structures - possible? May 26, 2011
multiple comparisons
2 msgs
matteo dossena multiple comparisons May 26, 2011
Yuan-Ye Zhang multiple comparisons May 26, 2011
contrasts for generalized linear model
2 msgs
Wade Wall contrasts for generalized linear model May 25, 2011
espesser contrasts for generalized linear model May 25, 2011
R-sig-mixed-models Digest, Vol 53, Issue 26
2 msgs
Ben Bolker R-sig-mixed-models Digest, Vol 53, Issue 26 May 22, 2011 Nicholas Lewin-Koh R-sig-mixed-models Digest, Vol 53, Issue 26 May 24, 2011
R squared and GLS
1 msg
Arnaud Mosnier R squared and GLS May 24, 2011
linear regression with replication
1 msg
Christof Kluß linear regression with replication May 24, 2011
compare non-nested logistic models
1 msg
Iasonas Lamprianou compare non-nested logistic models May 24, 2011
Logit model on panel data
2 msgs
Stanislav Chankov Logit model on panel data May 23, 2011
ronggui Logit model on panel data May 23, 2011
lme/anova vs paired t test query
4 msgs
Ben Bolker lme/anova vs paired t test query May 23, 2011
Gang Chen lme/anova vs paired t test query May 23, 2011
Ben Bolker lme/anova vs paired t test query May 23, 2011
Robert Kushler lme/anova vs paired t test query May 23, 2011
various priors for MCMCglmm
1 msg
Ned Dochtermann various priors for MCMCglmm May 23, 2011
various priors for MCMCglmm
1 msg
Ned Dochtermann various priors for MCMCglmm May 20, 2011
Time series and (or?) repeated measures with many, random time points.
1 msg
Alex Bokov Time series and (or?) repeated measures with many, random time points. May 20, 2011
Warning message when using lmer
2 msgs
Thackeray, Stephen J. Warning message when using lmer May 20, 2011
Ben Bolker Warning message when using lmer May 20, 2011
hierarchical gamma model in lme4
3 msgs
Ben Bolker hierarchical gamma model in lme4 May 18, 2011
dave fournier hierarchical gamma model in lme4 May 19, 2011
Douglas Bates hierarchical gamma model in lme4 May 19, 2011
using hglm to fit a gamma GLMM with nested random effects?
2 msgs
Benjamin Caldwell using hglm to fit a gamma GLMM with nested random effects? May 18, 2011
David Duffy using hglm to fit a gamma GLMM with nested randomeffects? May 18, 2011
Specifying block-level variables for a complete block design with glmer
2 msgs
Thomas Levine Specifying block-level variables for a complete block design with glmer May 18, 2011
Thomas Levine Specifying block-level variables for a complete block design with glmer May 18, 2011
MCMCglmm installation error
4 msgs
Ryan Buell MCMCglmm installation error May 18, 2011
Ben Bolker MCMCglmm installation error May 18, 2011
Rolf Turner MCMCglmm installation error May 18, 2011
Ben Bolker MCMCglmm installation error May 18, 2011
hierarchical gamma model in lme4
1 msg
Ben Bolker hierarchical gamma model in lme4 May 17, 2011
transforming predicted values of a glmm lme4
3 msgs
Michael Gerisch transforming predicted values of a glmm lme4 May 17, 2011
Ben Bolker transforming predicted values of a glmm lme4 May 17, 2011
Douglas Bates transforming predicted values of a glmm lme4 May 17, 2011
GAMM use of random effects
1 msg
Martin GAMM use of random effects May 17, 2011
Meaning of perfect correlation between, by-intercept and by-slope adjustments
1 msg
Petar Milin Meaning of perfect correlation between, by-intercept and by-slope adjustments May 17, 2011
Observation Level Random Effect in GLMM
2 msgs
Ross Culloch Observation Level Random Effect in GLMM May 16, 2011
David Duffy Observation Level Random Effect in GLMM May 16, 2011
Meaning of perfect correlation between by-intercept and by-slope adjustments
7 msgs
Petar Milin Meaning of perfect correlation between by-intercept and by-slope adjustments May 13, 2011
Douglas Bates Meaning of perfect correlation between by-intercept and by-slope adjustments May 13, 2011
Petar Milin Meaning of perfect correlation between by-intercept and by-slope adjustments May 13, 2011
Douglas Bates Meaning of perfect correlation between by-intercept and by-slope adjustments May 13, 2011
Ben Bolker Meaning of perfect correlation between by-intercept and by-slope adjustments May 14, 2011
Petar Milin Meaning of perfect correlation between by-intercept and by-slope adjustments May 16, 2011
Douglas Bates Meaning of perfect correlation between by-intercept and by-slope adjustments May 16, 2011
Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects
4 msgs
Dominick Samperi Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects May 13, 2011
dave fournier Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects May 14, 2011
Dominick Samperi Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects May 15, 2011
dave fournier Hamiltonian Monte Carlo and Reimann manifold Langevin Monte Carlo and Mixed Effects May 15, 2011
bivariate logistic/probit with hierarchical structure
6 msgs
Arthur Charpentier bivariate logistic/probit with hierarchical structure May 6, 2011
Jarrod Hadfield bivariate logistic/probit with hierarchical structure May 7, 2011
David Duffy bivariate logistic/probit with hierarchical structure May 10, 2011
Jarrod Hadfield bivariate logistic/probit with hierarchical structure May 11, 2011
David Duffy bivariate logistic/probit with hierarchical structure May 11, 2011
Jarrod Hadfield bivariate logistic/probit with hierarchical structure May 15, 2011
Gmodels, estimable() question
1 msg
eirintan at stud.ntnu.no Gmodels, estimable() question May 13, 2011
df numbers in lmer
1 msg
Zofia Prokop df numbers in lmer May 13, 2011
Basic file management -- How to write.table of, ranef()
2 msgs
Petar Milin Basic file management -- How to write.table of, ranef() May 12, 2011
Douglas Bates Basic file management -- How to write.table of, ranef() May 12, 2011
Basic file management -- How to write.table of ranef()
2 msgs
Jeremy Koster Basic file management -- How to write.table of ranef() May 12, 2011
Ben Bolker Basic file management -- How to write.table of ranef() May 12, 2011
Random Nesting & interactions with MCMCglmm
1 msg
Robin Jeffries Random Nesting & interactions with MCMCglmm May 12, 2011
A Question about specifying error variance/covariance structure in lmer
2 msgs
Chester Kam A Question about specifying error variance/covariance structure in lmer May 10, 2011
Douglas Bates A Question about specifying error variance/covariance structure in lmer May 12, 2011
GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated?
5 msgs
Alicia Valdés GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated? May 5, 2011
Alicia Valdés GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated? May 5, 2011
Ben Bolker GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated? May 6, 2011
Alicia Valdés GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated? May 12, 2011
Alicia Valdés GLMM for data with many zeros: poisson, lognormal-poisson or zero-inflated? May 12, 2011
Check for overdispersion in lmer (count data)
1 msg
Iker Vaquero Alba Check for overdispersion in lmer (count data) May 11, 2011
df numbers in lmer
4 msgs
Zofia Prokop df numbers in lmer May 10, 2011
Ben Bolker df numbers in lmer May 10, 2011
Peter Dalgaard df numbers in lmer May 11, 2011
Andrew Miles df numbers in lmer May 11, 2011
Inverse Wishart: rIW, riwish, and Sorensen-Gianola
6 msgs
Dominick Samperi Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 2, 2011
Jarrod Hadfield Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 2, 2011
Dominick Samperi Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 3, 2011
Dominick Samperi Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 9, 2011
Jarrod Hadfield Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 9, 2011
Dominick Samperi Inverse Wishart: rIW, riwish, and Sorensen-Gianola May 10, 2011
(no subject)
2 msgs
Romain.Piault (no subject) May 10, 2011
Yuan-Ye Zhang (no subject) May 10, 2011
Peak in posterior density produced by pvals.fnc
1 msg
Piault Romain Peak in posterior density produced by pvals.fnc May 10, 2011
Peak in posterior density produced by pvals.fnc
1 msg
Romain.Piault Peak in posterior density produced by pvals.fnc May 10, 2011
Posterior density produced by pvals.fnc
1 msg
Romain.Piault Posterior density produced by pvals.fnc May 10, 2011
Peak in posterior density produced by pvals.fnc
1 msg
Romain.Piault Peak in posterior density produced by pvals.fnc May 10, 2011
reconstruction of effect sizes in Baayen, Davidson & Bates (2008)
3 msgs
VANHOVE Jan reconstruction of effect sizes in Baayen, Davidson & Bates (2008) May 5, 2011
Andrew Robinson reconstruction of effect sizes in Baayen, Davidson & Bates (2008) May 5, 2011
Dominick Samperi reconstruction of effect sizes in Baayen, Davidson & Bates (2008) May 7, 2011
New CRAN package: agridat
2 msgs
Kevin Wright New CRAN package: agridat May 6, 2011
Andrew Robinson New CRAN package: agridat May 6, 2011
Overdispersion & Observation-Level Random Effects - their use and interpretation
1 msg
Ross Culloch Overdispersion & Observation-Level Random Effects - their use and interpretation May 6, 2011
question about random coefficients model (RCM)
1 msg
Malcolm Fairbrother question about random coefficients model (RCM) May 5, 2011
mixed-effect model with multinomial response
3 msgs
Anna-Marie_Benson at fws.gov mixed-effect model with multinomial response May 4, 2011
Dennis Murphy mixed-effect model with multinomial response May 4, 2011
Rune Haubo mixed-effect model with multinomial response May 5, 2011
mixed-effect model with multinomial response (Chris Gast)
1 msg
Chris Gast mixed-effect model with multinomial response (Chris Gast) May 4, 2011
independent random effects with equal variances
3 msgs
Douglas Bates independent random effects with equal variances May 4, 2011
Christos Hatzis independent random effects with equal variances May 4, 2011
Jarrod Hadfield independent random effects with equal variances May 4, 2011
independent random effects with equal variances
3 msgs
Hae Kyung Im independent random effects with equal variances May 4, 2011
Douglas Bates independent random effects with equal variances May 4, 2011
Christos Hatzis independent random effects with equal variances May 4, 2011
problems loading lme4a in R 2.13.0
3 msgs
Robert Kinley problems loading lme4a in R 2.13.0 May 3, 2011
Dale Steele problems loading lme4a in R 2.13.0 May 3, 2011
Robert Kinley problems loading lme4a in R 2.13.0 May 3, 2011
Interaction between crossed and nested random effects
2 msgs
Niccolò Bassani Interaction between crossed and nested random effects May 3, 2011
Niccolò Bassani Interaction between crossed and nested random effects May 3, 2011