R-SIG-mixed-models November 2011

4 binary DVs, subjects nested within schools

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C

J

8 msgs · Nov 22 – Nov 23

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Paul Johnson 4 binary DVs, subjects nested within schools Nov 22, 2011

C

Chris Howden 4 binary DVs, subjects nested within schools Nov 22, 2011

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John Maindonald 4 binary DVs, subjects nested within schools Nov 22, 2011

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Paul Johnson 4 binary DVs, subjects nested within schools Nov 22, 2011

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John Maindonald 4 binary DVs, subjects nested within schools Nov 22, 2011

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Chris Howden 4 binary DVs, subjects nested within schools Nov 22, 2011

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David Duffy 4 binary DVs, subjects nested within schools Nov 22, 2011

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Yvonnick Noel 4 binary DVs, subjects nested within schools Nov 23, 2011

ANCOVA with repeated measures

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B

5 msgs · Nov 28 – Nov 29

R

Ricardo Solar ANCOVA with repeated measures Nov 28, 2011

B

Ben Bolker ANCOVA with repeated measures Nov 29, 2011

R

Ricardo Solar ANCOVA with repeated measures Nov 29, 2011

B

Ben Bolker ANCOVA with repeated measures Nov 29, 2011

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Ricardo Solar ANCOVA with repeated measures Nov 29, 2011

Anova and random effects

F

1 msg · Nov 16

F

Flores-de-Gracia, Eric Anova and random effects Nov 16, 2011

BLUPs as measures of phenotypic diversity

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1 msg · Nov 7

J

John.Morrongiello at csiro.au BLUPs as measures of phenotypic diversity Nov 7, 2011

Bootstrapping an lmer model

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H

D

5 msgs · Nov 3 – Nov 4

C

Christoph Scherber Bootstrapping an lmer model Nov 3, 2011

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Hugo Mildenberger Bootstrapping an lmer model Nov 3, 2011

C

Christoph Scherber Bootstrapping an lmer model Nov 3, 2011

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Douglas Bates Bootstrapping an lmer model Nov 3, 2011

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Hugo Mildenberger Bootstrapping an lmer model Nov 4, 2011

Collinearity in lmer

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2 msgs · Nov 3 – Nov 3

I

Iker Vaquero Alba Collinearity in lmer Nov 3, 2011

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Iker Vaquero Alba Collinearity in lmer Nov 3, 2011

Comparison of lme4, geepack for binary correlated variables

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1 msg · Nov 20

D

David Duffy Comparison of lme4, geepack for binary correlated variables Nov 20, 2011

Count GLMM ms and R code

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1 msg · Nov 28

D

David Atkins Count GLMM ms and R code Nov 28, 2011

Data nested and spatial auto-correlation

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1 msg · Nov 25

I

Izaias Fernandes Data nested and spatial auto-correlation Nov 25, 2011

Error in nlmer gradient must be of size...

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B

5 msgs · Nov 9 – Nov 29

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Luciano Selzer Error in nlmer gradient must be of size... Nov 9, 2011

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Luciano Selzer Error in nlmer gradient must be of size... Nov 9, 2011

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Luciano Selzer Error in nlmer gradient must be of size... Nov 9, 2011

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Ben Bolker Error in nlmer gradient must be of size... Nov 12, 2011

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Luciano Selzer Error in nlmer gradient must be of size... Nov 29, 2011

Error when installing the glmmADMB package

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B

2 msgs · Nov 30 – Nov 30

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Juan Santos Error when installing the glmmADMB package Nov 30, 2011

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Ben Bolker Error when installing the glmmADMB package Nov 30, 2011

Estimating IRT models by using nlme() function

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1 msg · Nov 11

J

Joshua Wiley Estimating IRT models by using nlme() function Nov 11, 2011

False convergence when running lmer with Zelig example for gamma.mixed

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1 msg · Nov 7

H

Hugo Mildenberger False convergence when running lmer with Zelig example for gamma.mixed Nov 7, 2011

GLMM with Poisson

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B

2 msgs · Nov 16 – Nov 18

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Zofia Ecaterina Taranu GLMM with Poisson Nov 16, 2011

B

Ben Bolker GLMM with Poisson Nov 18, 2011

GLMM with negatively skewed data distribution

B

R

3 msgs · Nov 12 – Nov 13

B

Balázs Lestár GLMM with negatively skewed data distribution Nov 12, 2011

R

Reinhold Kliegl GLMM with negatively skewed data distribution Nov 12, 2011

B

Balázs Lestár GLMM with negatively skewed data distribution Nov 13, 2011

Granger's causality test

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1 msg · Nov 16

R

rafleon at highstat.cl Granger's causality test Nov 16, 2011

Help on example from Baayen, Davidson & Bates, 2008

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1 msg · Nov 4

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Margaret Wardle Help on example from Baayen, Davidson & Bates, 2008 Nov 4, 2011

Help with nested model in lme

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B

2 msgs · Nov 15 – Nov 15

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Chris Habeck Help with nested model in lme Nov 15, 2011

B

Ben Bolker Help with nested model in lme Nov 15, 2011

Help!

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D

2 msgs · Nov 2 – Nov 2

E

Eric ADJAKOSSA Help! Nov 2, 2011

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Doran, Harold Help! Nov 2, 2011

Hi

D

1 msg · Nov 30

D

Douglas Bates Hi Nov 30, 2011

Multivariate Linear Mixed Model in lme4

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1 msg · Nov 7

K

Kevin Wright Multivariate Linear Mixed Model in lme4 Nov 7, 2011

Needing help with a simple longitudinal model

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1 msg · Nov 1

I

Ira Sharenow Needing help with a simple longitudinal model Nov 1, 2011

Nlme prediction intervals confidence intervals multiple comparison query

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1 msg · Nov 8

P

Philip Harrison Nlme prediction intervals confidence intervals multiple comparison query Nov 8, 2011

No data for 1 interaction combination: problem in R not in Genstat

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1 msg · Nov 9

O

ONKELINX, Thierry No data for 1 interaction combination: problem in R not in Genstat Nov 9, 2011

No data for 1 interaction combination: problem in R not in Genstat

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1 msg · Nov 8

S

stéphanie braun No data for 1 interaction combination: problem in R not in Genstat Nov 8, 2011

Population fit with glm works fine: totally off with glmer

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D

2 msgs · Nov 26 – Nov 28

B

Ben Bolker Population fit with glm works fine: totally off with glmer Nov 26, 2011

D

Dieter Menne Population fit with glm works fine: totally off with glmer Nov 28, 2011

Population fit with glm works fine: totally off with glmer

D

1 msg · Nov 26

D

Dieter Menne Population fit with glm works fine: totally off with glmer Nov 26, 2011

Question regarding glmer in lme4

D

B

3 msgs · Nov 4 – Nov 5

D

Douglas Bates Question regarding glmer in lme4 Nov 4, 2011

B

Ben Bolker Question regarding glmer in lme4 Nov 4, 2011

B

Ben Bolker Question regarding glmer in lme4 Nov 5, 2011

R-sig-mixed-models mailing list submission

K

1 msg · Nov 14

K

Kim Geraldine Mortega R-sig-mixed-models mailing list submission Nov 14, 2011

R2 for a mixed model with AR(1) error structure

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1 msg · Nov 17

F

FMH R2 for a mixed model with AR(1) error structure Nov 17, 2011

R: mixed zero-inflated poisson regression

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1 msg · Nov 14

H

Highland Statistics Ltd R: mixed zero-inflated poisson regression Nov 14, 2011

Some warning messages

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1 msg · Nov 1

L

Likan Zhan Some warning messages Nov 1, 2011

Spatial correlation in lme

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B

H

3 msgs · Nov 14 – Nov 15

J

Jeffrey_Warren at fws.gov Spatial correlation in lme Nov 14, 2011

B

Ben Bolker Spatial correlation in lme Nov 14, 2011

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Highland Statistics Ltd Spatial correlation in lme Nov 15, 2011

UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R

B

2 msgs · Nov 18 – Nov 24

B

Ben Bolker UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R Nov 18, 2011

B

Ben Bolker UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R Nov 24, 2011

UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R

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D

3 msgs · Nov 17 – Nov 19

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John Clark UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R Nov 17, 2011

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David Duffy UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R Nov 17, 2011

D

David Duffy UNSOLVED: Re: lme4 or other open source mixed model package code equivalent to asreml-R Nov 19, 2011

Variance structure and random effects using lme, , what's the difference?

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1 msg · Nov 16

H

Highland Statistics Ltd Variance structure and random effects using lme, , what's the difference? Nov 16, 2011

Variance structure and random effects using lme, what's the difference?

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1 msg · Nov 16

M

Maria Susana Alvarado Barrientos Variance structure and random effects using lme, what's the difference? Nov 16, 2011

Varying slopes in a multilevel model with a between subjects treatment

D

1 msg · Nov 30

D

Derek Dunfield Varying slopes in a multilevel model with a between subjects treatment Nov 30, 2011

Very large HPDintervals, mcmcsamp, lmer

C

O

B

4 msgs · Nov 21 – Nov 23

C

Colin Wahl Very large HPDintervals, mcmcsamp, lmer Nov 21, 2011

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ONKELINX, Thierry Very large HPDintervals, mcmcsamp, lmer Nov 22, 2011

B

Ben Bolker Very large HPDintervals, mcmcsamp, lmer Nov 22, 2011

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Julio Alejandro Di Rienzo Very large HPDintervals, mcmcsamp, lmer Nov 23, 2011

Zhang 2011 (re)analysis

R

B

D

3 msgs · Nov 1 – Nov 7

R

Reinhold Kliegl Zhang 2011 (re)analysis Nov 1, 2011

B

Ben Bolker Zhang 2011 (re)analysis Nov 1, 2011

D

dave fournier Zhang 2011 (re)analysis Nov 7, 2011

account for temporal correlation

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B

2 msgs · Nov 18 – Nov 18

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matteo dossena account for temporal correlation Nov 18, 2011

B

Ben Bolker account for temporal correlation Nov 18, 2011

advice on model selection and use of BLUPs needed

K

1 msg · Nov 14

K

Kirstin-Friederike Heise advice on model selection and use of BLUPs needed Nov 14, 2011

can linear mixed model's fisher information matrix be invertible?

B

1 msg · Nov 9

B

Borysław Paulewicz can linear mixed model's fisher information matrix be invertible? Nov 9, 2011

different results for fixed terms

C

1 msg · Nov 14

C

Cristian Pasquaretta different results for fixed terms Nov 14, 2011

does this lme model work?

A

1 msg · Nov 18

A

Alen Hajnal does this lme model work? Nov 18, 2011

error loading lme4a (and b)

R

R

D

5 msgs · Nov 21 – Nov 22

R

Robert Kushler error loading lme4a (and b) Nov 21, 2011

R

Renaud Lancelot error loading lme4a (and b) Nov 21, 2011

D

Dennis Murphy error loading lme4a (and b) Nov 22, 2011

R

Robert Kushler error loading lme4a (and b) Nov 22, 2011

T

Thomas Petzoldt error loading lme4a (and b) Nov 22, 2011

errors with lme4

B

3 msgs · Nov 24 – Nov 26

B

Ben Bolker errors with lme4 Nov 24, 2011

B

Ben Bolker errors with lme4 Nov 26, 2011

B

Ben Bolker errors with lme4 Nov 26, 2011

fitted/resid method for lme4a does not work correctly with na.action

G

1 msg · Nov 23

G

gregor.hochschild at gmx.de fitted/resid method for lme4a does not work correctly with na.action Nov 23, 2011

function in R to test the goodness of fit of a linear mixed-effects model

F

M

2 msgs · Nov 16 – Nov 16

F

FMH function in R to test the goodness of fit of a linear mixed-effects model Nov 16, 2011

M

Maria Susana Alvarado Barrientos function in R to test the goodness of fit of a linear mixed-effects model Nov 16, 2011

glmer and glmmPQL

R

O

2 msgs · Nov 23 – Nov 24

R

Raquel Benavides glmer and glmmPQL Nov 23, 2011

O

ONKELINX, Thierry glmer and glmmPQL Nov 24, 2011

glmmPQL: Confidence intervals for predicted values

C

1 msg · Nov 1

C

Christoph Scherber glmmPQL: Confidence intervals for predicted values Nov 1, 2011

goodness of fit

F

2 msgs · Nov 16 – Nov 17

F

FMH goodness of fit Nov 16, 2011

F

FMH goodness of fit Nov 17, 2011

how to look at the effect of a variable I need to control for

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A

2 msgs · Nov 18 – Nov 18

G

glenda mendieta how to look at the effect of a variable I need to control for Nov 18, 2011

A

Andrew Miles how to look at the effect of a variable I need to control for Nov 18, 2011

how to look at the effect of a variable I need to control for/ random effects

G

1 msg · Nov 22

G

glenda mendieta how to look at the effect of a variable I need to control for/ random effects Nov 22, 2011

linear mixed model

K

1 msg · Nov 28

K

Kret, Mariska linear mixed model Nov 28, 2011

lme vs lme4

J

B

D

4 msgs · Nov 3 – Nov 4

J

Jim Maas lme vs lme4 Nov 3, 2011

B

Ben Bolker lme vs lme4 Nov 3, 2011

J

Jim Maas lme vs lme4 Nov 4, 2011

D

David Atkins lme vs lme4 Nov 4, 2011

lme4 or other open source mixed model package code equivalent to asreml-R

J

K

B

3 msgs · Nov 1 – Nov 3

J

John Clark lme4 or other open source mixed model package code equivalent to asreml-R Nov 1, 2011

K

Kevin Wright lme4 or other open source mixed model package code equivalent to asreml-R Nov 2, 2011

B

Ben Bolker lme4 or other open source mixed model package code equivalent to asreml-R Nov 3, 2011

lme4 package

M

1 msg · Nov 23

M

Mahmoud Torabi lme4 package Nov 23, 2011

lme4:glmer with nested and longitudinal data?

H

B

2 msgs · Nov 14 – Nov 14

H

hijita at gmx.net lme4:glmer with nested and longitudinal data? Nov 14, 2011

B

Ben Bolker lme4:glmer with nested and longitudinal data? Nov 14, 2011

lmer (non)convergence and verbose results

B

1 msg · Nov 18

B

Ben Pelzer lmer (non)convergence and verbose results Nov 18, 2011

lmer adjusted means

A

1 msg · Nov 5

A

Allan Carson lmer adjusted means Nov 5, 2011

lmer model specification

J

1 msg · Nov 30

J

jude girard lmer model specification Nov 30, 2011

matched pair analysis?

R

D

2 msgs · Nov 20 – Nov 23

R

Ryan King matched pair analysis? Nov 20, 2011

D

David Duffy matched pair analysis? Nov 23, 2011

mixed model basic question and mixed model equivalent of SAS estimate

J

D

2 msgs · Nov 6 – Nov 7

J

John Clark mixed model basic question and mixed model equivalent of SAS estimate Nov 6, 2011

D

Douglas Bates mixed model basic question and mixed model equivalent of SAS estimate Nov 7, 2011

mixed zero-inflated poisson regression

I

O

H

9 msgs · Nov 14 – Nov 17

I

Ivar Herfindal mixed zero-inflated poisson regression Nov 14, 2011

O

ONKELINX, Thierry mixed zero-inflated poisson regression Nov 14, 2011

H

Highland Statistics Ltd mixed zero-inflated poisson regression Nov 14, 2011

I

Ivar Herfindal mixed zero-inflated poisson regression Nov 14, 2011

J

Jarrod Hadfield mixed zero-inflated poisson regression Nov 14, 2011

M

Mollie Brooks mixed zero-inflated poisson regression Nov 15, 2011

D

Denise Rocha mixed zero-inflated poisson regression Nov 16, 2011

J

Jarrod Hadfield mixed zero-inflated poisson regression Nov 16, 2011

I

Ivar Herfindal mixed zero-inflated poisson regression Nov 17, 2011

mixed zero-inflated poisson regression (Ivar Herfindal)

J

1 msg · Nov 14

J

Julie Black mixed zero-inflated poisson regression (Ivar Herfindal) Nov 14, 2011

negative binomial mixed model with crossed and random effects

S

B

2 msgs · Nov 23 – Nov 23

S

Sharif S. Aly negative binomial mixed model with crossed and random effects Nov 23, 2011

B

Ben Bolker negative binomial mixed model with crossed and random effects Nov 23, 2011

papers about using MCMC in ecological study

J

K

2 msgs · Nov 25 – Nov 25

J

Jakub Szymkowiak papers about using MCMC in ecological study Nov 25, 2011

K

Koster, Jeremy (kosterjy) papers about using MCMC in ecological study Nov 25, 2011

problem with lme4a on mac: libRlapack.dylib not found

G

D

2 msgs · Nov 19 – Nov 20

G

gregor.hochschild at gmx.de problem with lme4a on mac: libRlapack.dylib not found Nov 19, 2011

D

David Winsemius problem with lme4a on mac: libRlapack.dylib not found Nov 20, 2011

random factor selection

K

B

2 msgs · Nov 20 – Nov 20

K

Kirstin-Friederike Heise random factor selection Nov 20, 2011

B

Ben Bolker random factor selection Nov 20, 2011

reference on unidentifiability of observation-level variance in Bernoulli variables?

B

K

I

3 msgs · Nov 15 – Nov 16

B

Ben Bolker reference on unidentifiability of observation-level variance in Bernoulli variables? Nov 15, 2011

K

Kent Holsinger reference on unidentifiability of observation-level variance in Bernoulli variables? Nov 16, 2011

I

iwhite@staffmail.ed.ac.uk reference on unidentifiability of observation-level variance in Bernoulli variables? Nov 16, 2011

reference on unidentifiability of, observation-level variance in Bernoulli variables?

H

1 msg · Nov 16

H

Highland Statistics Ltd reference on unidentifiability of, observation-level variance in Bernoulli variables? Nov 16, 2011

repeated measurement using mixed model

J

C

3 msgs · Nov 17 – Nov 18

J

Jinsong Zhao repeated measurement using mixed model Nov 17, 2011

C

Christoph Scherber repeated measurement using mixed model Nov 18, 2011

J

Jinsong Zhao repeated measurement using mixed model Nov 18, 2011

seeking some advice on fixed vs random specification

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D

D

6 msgs · Nov 1 – Nov 1

P

Peter Claussen seeking some advice on fixed vs random specification Nov 1, 2011

D

david depew seeking some advice on fixed vs random specification Nov 1, 2011

D

Douglas Bates seeking some advice on fixed vs random specification Nov 1, 2011

D

Derek Dunfield seeking some advice on fixed vs random specification Nov 1, 2011

D

Douglas Bates seeking some advice on fixed vs random specification Nov 1, 2011

R

Robert A LaBudde seeking some advice on fixed vs random specification Nov 1, 2011

taking in account results of a gmml in despite of error warning about memory?

G

B

C

4 msgs · Nov 28 – Nov 29

G

glenda mendieta taking in account results of a gmml in despite of error warning about memory? Nov 28, 2011

B

Ben Bolker taking in account results of a gmml in despite of error warning about memory? Nov 28, 2011

C

Chris Howden taking in account results of a gmml in despite of error warning about memory? Nov 28, 2011

O

ONKELINX, Thierry taking in account results of a gmml in despite of error warning about memory? Nov 29, 2011

taking in account results of a gmml in despite, of error warning about memory?

C

O

3 msgs · Nov 29 – Nov 30

C

Chris Howden taking in account results of a gmml in despite, of error warning about memory? Nov 29, 2011

C

Chris Howden taking in account results of a gmml in despite, of error warning about memory? Nov 29, 2011

O

ONKELINX, Thierry taking in account results of a gmml in despite, of error warning about memory? Nov 30, 2011

unreplicated repeated measures

J

2 msgs · Nov 23 – Nov 23

J

Jinsong Zhao unreplicated repeated measures Nov 23, 2011

J

Jinsong Zhao unreplicated repeated measures Nov 23, 2011

updated Zhang et al 2011 reanalysis

B

1 msg · Nov 9

B

Ben Bolker updated Zhang et al 2011 reanalysis Nov 9, 2011

verbose output / high correlation

B

1 msg · Nov 4

B

Ben Pelzer verbose output / high correlation Nov 4, 2011

weighted mixed model regression

A

D

A

3 msgs · Nov 17 – Nov 18

A

Ahmad Rabiee weighted mixed model regression Nov 17, 2011

D

Dennis Murphy weighted mixed model regression Nov 18, 2011

A

AC Del Re weighted mixed model regression Nov 18, 2011