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R-SIG-mixed-models March 2012

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MCMC model selection reference
1 msg
Ray Danner MCMC model selection reference Mar 31, 2012
lme4a installation
1 msg
Boris Shor lme4a installation Mar 30, 2012
extracting gradient and hessian matrix from lme4
3 msgs
Joshua Wiley extracting gradient and hessian matrix from lme4 Mar 17, 2012
Ben Bolker extracting gradient and hessian matrix from lme4 Mar 19, 2012
Joshua Wiley extracting gradient and hessian matrix from lme4 Mar 30, 2012
structure of a lmer code
5 msgs
Antoine TARDIF structure of a lmer code Mar 28, 2012
Ista Zahn structure of a lmer code Mar 28, 2012
Denis Vile crossed effects with lmer but correlation structure with lme Mar 29, 2012
Denis Vile crossed effects with lmer but correlation structure with lme Mar 30, 2012
Ben Bolker crossed effects with lmer but correlation structure with lme Mar 30, 2012
error on example
3 msgs
Brent Pedersen error on example Mar 29, 2012
Ben Bolker error on example Mar 29, 2012
Brent Pedersen error on example Mar 30, 2012
Is anyone using the lmList() function in the lme4 package?
1 msg
Vasco Cadavez Is anyone using the lmList() function in the lme4 package? Mar 30, 2012
problems to install glmmADMB
2 msgs
Natalia Vizcaíno Palomar problems to install glmmADMB Mar 30, 2012
Gabor Grothendieck problems to install glmmADMB Mar 30, 2012
Help understanding residual variance
10 msgs
Ista Zahn Help understanding residual variance Mar 26, 2012
Greg Snow Help understanding residual variance Mar 27, 2012
Ista Zahn Help understanding residual variance Mar 27, 2012
Ista Zahn Help understanding residual variance Mar 28, 2012
Reinhold Kliegl Help understanding residual variance Mar 28, 2012
Ista Zahn Help understanding residual variance Mar 29, 2012
Joshua Wiley Help understanding residual variance Mar 29, 2012
Ista Zahn Help understanding residual variance Mar 29, 2012
Ben Bolker Help understanding residual variance Mar 29, 2012
Roger Levy Help understanding residual variance Mar 29, 2012
SUR in lmer
4 msgs
Giulia Dotti Sani SUR in lmer Mar 29, 2012
Markus Jäntti SUR in lmer Mar 29, 2012
Giulia Dotti Sani SUR in lmer Mar 29, 2012
Markus Jäntti SUR in lmer Mar 29, 2012
Conflicting p-values from pvals.fnc
3 msgs
Tom Gijssels Conflicting p-values from pvals.fnc Mar 19, 2012
Geoff Brookshire Conflicting p-values from pvals.fnc Mar 26, 2012
Roger Levy Conflicting p-values from pvals.fnc Mar 28, 2012
structure of a lmer code
1 msg
Kenneth Takagi structure of a lmer code Mar 28, 2012
coefplot2/glmmADMB
1 msg
Antonio P. Ramos coefplot2/glmmADMB Mar 28, 2012
coefplot2/glmmADMB
5 msgs
Ben Bolker coefplot2/glmmADMB Mar 28, 2012
Antonio P. Ramos coefplot2/glmmADMB Mar 28, 2012
Andrzej coefplot2/glmmADMB Mar 28, 2012
Antonio P. Ramos coefplot2/glmmADMB Mar 28, 2012
Andrew Robinson coefplot2/glmmADMB Mar 28, 2012
discrepancy between paired t test and glht on lme models
1 msg
Rajasimhan Rajagovindan discrepancy between paired t test and glht on lme models Mar 28, 2012
Dispersion parameter negbin1 in glmmADMB
3 msgs
Hanna ten Brink Dispersion parameter negbin1 in glmmADMB Mar 27, 2012
Dean Castillo Dispersion parameter negbin1 in glmmADMB Mar 28, 2012
Ben Bolker Dispersion parameter negbin1 in glmmADMB Mar 28, 2012
question on MCMCglmm
2 msgs
emre karaman question on MCMCglmm Mar 26, 2012
Jarrod Hadfield question on MCMCglmm Mar 28, 2012
Zero inflated GAMM
1 msg
Bert Harris Zero inflated GAMM Mar 27, 2012
[ADMB Users] Anova table for glmm.admb objects
4 msgs
Ben Bolker Anova table for glmm.admb objects Mar 26, 2012
Thomas Merkling Anova table for glmm.admb objects Mar 27, 2012
Ben Bolker Anova table for glmm.admb objects Mar 27, 2012
John Fox Anova table for glmm.admb objects Mar 27, 2012
What error distribution should I use?
1 msg
Lívia Dorneles Audino What error distribution should I use? Mar 27, 2012
help with ordinal mixed model (reposted from r-help)
2 msgs
Ben Bolker help with ordinal mixed model (reposted from r-help) Mar 26, 2012
Jarrod Hadfield help with ordinal mixed model (reposted from r-help) Mar 26, 2012
problem in the implementation of the function "lmer" of the "lme4" package - Important
3 msgs
cristiana vieira problem in the implementation of the function "lmer" of the "lme4" package - Important Mar 22, 2012
Ben Bolker problem in the implementation of the function Mar 26, 2012
Martin Maechler problem in the implementation of the function Mar 26, 2012
Help ordinal mixed model!
1 msg
Ivan Allaman Help ordinal mixed model! Mar 25, 2012
covariances between non normal traits
3 msgs
Celine Teplitsky covariances between non normal traits Mar 23, 2012
iwhite@staffmail.ed.ac.uk covariances between non normal traits Mar 23, 2012
Emmanuel Charpentier covariances between non normal traits Mar 24, 2012
Back-transforming binomial standard errors
2 msgs
Adam Hayward Back-transforming binomial standard errors Mar 23, 2012
ONKELINX, Thierry Back-transforming binomial standard errors Mar 23, 2012
glmm with a tweedie distribution
3 msgs
Danson, Bryan glmm with a tweedie distribution Mar 21, 2012
Zhang,Yanwei glmm with a tweedie distribution Mar 21, 2012
Danson, Bryan glmm with a tweedie distribution Mar 22, 2012
modelling proportions, with aggregated data, and the new/old lme4
11 msgs
Malcolm Fairbrother modelling proportions, with aggregated data, and the new/old lme4 Mar 18, 2012
Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Mar 18, 2012
Rolf Turner modelling proportions, with aggregated data, and the new/old lme4 Mar 18, 2012
Joerg Luedicke modelling proportions, with aggregated data, and the new/old lme4 Mar 18, 2012
Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Mar 18, 2012
Fredrik Nilsson modelling proportions, with aggregated data, and the new/old lme4 Mar 19, 2012
Joerg Luedicke modelling proportions, with aggregated data, and the new/old lme4 Mar 19, 2012
Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Mar 19, 2012
Adam Smith modelling proportions, with aggregated data, and the new/old lme4 Mar 21, 2012
Adam Smith modelling proportions, with aggregated data, and the new/old lme4 Mar 21, 2012
Fredrik Nilsson modelling proportions, with aggregated data, and the new/old lme4 Mar 22, 2012
GLMM - how to consider temporal pseudo-replication in the analyses?
1 msg
Lívia Dorneles Audino GLMM - how to consider temporal pseudo-replication in the analyses? Mar 22, 2012
glmm with a tweedie distribution
8 msgs
Danson, Bryan glmm with a tweedie distribution Mar 19, 2012
Ben Bolker glmm with a tweedie distribution Mar 19, 2012
Bill Pikounis glmm with a tweedie distribution Mar 19, 2012
Zhang,Yanwei glmm with a tweedie distribution Mar 19, 2012
Bill Pikounis glmm with a tweedie distribution Mar 19, 2012
Rubén Roa glmm with a tweedie distribution Mar 20, 2012
Ben Bolker glmm with a tweedie distribution Mar 20, 2012
Zhang,Yanwei glmm with a tweedie distribution Mar 21, 2012
Doubts about the construction of mixed models
2 msgs
Lívia Dorneles Audino Doubts about the construction of mixed models Mar 21, 2012
Lívia Dorneles Audino Doubts about the construction of mixed models Mar 21, 2012
Anova/deviance table in glmmADMB
1 msg
Ben Bolker Anova/deviance table in glmmADMB Mar 21, 2012
observation level random effects/kinship model
1 msg
Ryan King observation level random effects/kinship model Mar 21, 2012
coefplot2 package not available
1 msg
Juan Santos coefplot2 package not available Mar 21, 2012
Question regarding lme mixed model, error in case 1, not in case 2
2 msgs
Petter Hedberg Question regarding lme mixed model, error in case 1, not in case 2 Mar 21, 2012
Joerg Luedicke Question regarding lme mixed model, error in case 1, not in case 2 Mar 21, 2012
Question regarding lme repeated measures error in case 1, but not case 2
1 msg
Petter Hedberg Question regarding lme repeated measures error in case 1, but not case 2 Mar 21, 2012
observation level random effects/kinship model
4 msgs
Ryan King observation level random effects/kinship model Mar 14, 2012
Juliet Hannah observation level random effects/kinship model Mar 19, 2012
Yves Rousselle observation level random effects/kinship model Mar 21, 2012
David Duffy observation level random effects/kinship model Mar 21, 2012
glmm with a tweedie distribution
2 msgs
Danson, Bryan glmm with a tweedie distribution Mar 20, 2012
Ben Bolker glmm with a tweedie distribution Mar 20, 2012
Anova/deviance table in glmmADMB
3 msgs
Thomas Merkling Anova/deviance table in glmmADMB Mar 20, 2012
John Fox Anova/deviance table in glmmADMB Mar 20, 2012
Ben Bolker Anova/deviance table in glmmADMB Mar 20, 2012
repeated measures: lme(r) vs manova
2 msgs
Nathan Lemoine repeated measures: lme(r) vs manova Mar 19, 2012
Martin Schmettow repeated measures: lme(r) vs manova Mar 20, 2012
Wald tests GLMM with glmer
1 msg
Malcolm Fairbrother Wald tests GLMM with glmer Mar 20, 2012
Wald tests GLMM with glmer
1 msg
Thomas Merkling Wald tests GLMM with glmer Mar 19, 2012
Unacceptibly high autocorrelation in MCMCglmm
3 msgs
Stuart Luppescu Unacceptibly high autocorrelation in MCMCglmm Mar 16, 2012
Jarrod Hadfield Unacceptibly high autocorrelation in MCMCglmm Mar 17, 2012
Stuart Luppescu Unacceptibly high autocorrelation in MCMCglmm Mar 19, 2012
Specifying continuous covariates and predictors in lmer
1 msg
Nikky Specifying continuous covariates and predictors in lmer Mar 19, 2012
(no subject)
1 msg
Danson, Bryan (no subject) Mar 19, 2012
Poisson GLMM: where is the deviance?
2 msgs
Luciano La Sala Poisson GLMM: where is the deviance? Mar 17, 2012
Ben Bolker Poisson GLMM: where is the deviance? Mar 17, 2012
Measures of dispersion for random effects
1 msg
Andrew Correia Measures of dispersion for random effects Mar 16, 2012
multicore lmer: any changes since 2007?
3 msgs
Michael Lawrence multicore lmer: any changes since 2007? Mar 16, 2012
Michael Lawrence multicore lmer: any changes since 2007? Mar 16, 2012
Douglas Bates multicore lmer: any changes since 2007? Mar 16, 2012
With glmmPQL Error in corFactor.corSpatial(object)
1 msg
Gregor Didenko With glmmPQL Error in corFactor.corSpatial(object) Mar 16, 2012
Package name changes on the SVN repository at lme4.R-forge.R-project.org
1 msg
Douglas Bates Package name changes on the SVN repository at lme4.R-forge.R-project.org Mar 15, 2012
Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors
5 msgs
Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Mar 9, 2012
Jarrod Hadfield Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Mar 9, 2012
Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Mar 9, 2012
Jarrod Hadfield Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Mar 11, 2012
Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Mar 15, 2012
help with lme4
1 msg
Douglas Bates help with lme4 Mar 15, 2012
No need to handle between-group correlation structure in glmm in general?
4 msgs
Junyan Luo No need to handle between-group correlation structure in glmm in general? Mar 13, 2012
Steven J. Pierce No need to handle between-group correlation structure in glmm in general? Mar 14, 2012
Junyan Luo No need to handle between-group correlation structure in glmm in general? Mar 14, 2012
Steven J. Pierce No need to handle between-group correlation structure in glmm in general? Mar 15, 2012
a good book?
3 msgs
Saang-Yoon Hyun a good book? Mar 14, 2012
Kevin Wright a good book? Mar 14, 2012
Alan Haynes a good book? Mar 15, 2012
lme code
3 msgs
Bhogal, Harkiran lme code Mar 14, 2012
Federico Calboli lme code Mar 14, 2012
Gang Chen lme code Mar 14, 2012
observation level random effects/kinship model
1 msg
Pelle Ingvarsson observation level random effects/kinship model Mar 14, 2012
observation level random effects/kinship model
4 msgs
Juliet Hannah observation level random effects/kinship model Mar 13, 2012
Ben Bolker observation level random effects/kinship model Mar 13, 2012
Jonas Klasen observation level random effects/kinship model Mar 13, 2012
Yves Rousselle observation level random effects/kinship model Mar 14, 2012
issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme)
1 msg
Rudolf Philippe Rohr issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme) Mar 14, 2012
Specifying continuous covariates and predictors in lmer
1 msg
Nicole Prause Specifying continuous covariates and predictors in lmer Mar 13, 2012
how to write crossed and nested random effects in a model
1 msg
Ben Bolker how to write crossed and nested random effects in a model Mar 13, 2012
How to write crossed and nested random effects in a model
1 msg
withanage Niroshan perera How to write crossed and nested random effects in a model Mar 13, 2012
glmADMB mcmc output
3 msgs
Dean Castillo glmADMB mcmc output Mar 12, 2012
Ben Bolker glmADMB mcmc output Mar 13, 2012
Dean Castillo glmADMB mcmc output Mar 13, 2012
lme4Eigen's bootMer & installing latest svn
5 msgs
Michael Lawrence lme4Eigen's bootMer & installing latest svn Mar 9, 2012
Ben Bolker lme4Eigen's bootMer & installing latest svn Mar 9, 2012
Michael Lawrence lme4Eigen's bootMer & installing latest svn Mar 10, 2012
Ken Knoblauch lme4Eigen's bootMer & installing latest svn Mar 12, 2012
Ben Bolker lme4Eigen's bootMer & installing latest svn Mar 13, 2012
Incorrect reporting of variance component from weighted LMM with lme4?
1 msg
Chris Gast Incorrect reporting of variance component from weighted LMM with lme4? Mar 13, 2012
(no subject)
1 msg
Douglas Bates (no subject) Mar 13, 2012
Question on the glmer function of the lme4 R package
2 msgs
Feddag Mohand-Larbi Question on the glmer function of the lme4 R package Mar 12, 2012
Douglas Bates Question on the glmer function of the lme4 R package Mar 12, 2012
glmm with continuous data
1 msg
Danson, Bryan glmm with continuous data Mar 12, 2012
glmmADMB mcmc output
1 msg
Dean Castillo glmmADMB mcmc output Mar 11, 2012
glmmADMB mcmc output
1 msg
Dean Castillo glmmADMB mcmc output Mar 10, 2012
zero-inflation with mixed-effects, glmmADMB, and cloglog
5 msgs
Anne Bjorkman zero-inflation with mixed-effects, glmmADMB, and cloglog Mar 6, 2012
Zhang,Yanwei zero-inflation with mixed-effects, glmmADMB, and cloglog Mar 6, 2012
Anne Bjorkman zero-inflation with mixed-effects, glmmADMB, and cloglog Mar 7, 2012
Ben Bolker zero-inflation with mixed-effects, glmmADMB, and cloglog Mar 8, 2012
Kay Cichini zero-inflation with mixed-effects, glmmADMB, and cloglog Mar 8, 2012
Mixed Effects Logistic Regression Model and finding p-values
1 msg
Charla Patterson Mixed Effects Logistic Regression Model and finding p-values Mar 7, 2012
lmer/glmer standard error interpretation and visualization
3 msgs
Colin Wahl lmer/glmer standard error interpretation and visualization Mar 7, 2012
Ben Bolker lmer/glmer standard error interpretation and visualization Mar 7, 2012
Ben Bolker lmer/glmer standard error interpretation and visualization Mar 7, 2012
Comparing the effect size of parameters across non-nested models with different outcomes
2 msgs
Petersen, Isaac T Comparing the effect size of parameters across non-nested models with different outcomes Mar 7, 2012
Ben Bolker Comparing the effect size of parameters across non-nested models with different outcomes Mar 7, 2012
model comparison in glmmADMB
2 msgs
RH Gibson, School Biological Sciences model comparison in glmmADMB Mar 7, 2012
Ben Bolker model comparison in glmmADMB Mar 7, 2012
error message using glmmadmb
1 msg
Ben Bolker error message using glmmadmb Mar 7, 2012
error in nlme()
5 msgs
amelie pinet error in nlme() Mar 2, 2012
Ben Bolker error in nlme() Mar 2, 2012
amelie pinet error in nlme() Mar 6, 2012
Ben Bolker error in nlme() Mar 6, 2012
amelie pinet error in nlme() Mar 7, 2012
Quadratic with Random Offset in One Dimension
2 msgs
Chris Long Quadratic with Random Offset in One Dimension Mar 3, 2012
ONKELINX, Thierry Quadratic with Random Offset in One Dimension Mar 7, 2012
Question on the glmer function of the lme4 R package
2 msgs
Feddag Mohand-Larbi Question on the glmer function of the lme4 R package Mar 6, 2012
ONKELINX, Thierry Question on the glmer function of the lme4 R package Mar 7, 2012
MCMCglmm: multivariate response with phylogenetic structure
2 msgs
Kyle Edwards MCMCglmm: multivariate response with phylogenetic structure Mar 6, 2012
Jarrod Hadfield MCMCglmm: multivariate response with phylogenetic structure Mar 7, 2012
possible issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme)
1 msg
Simon Blomberg possible issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme) Mar 6, 2012
Covariance models with lme and gls
2 msgs
Student Stats Covariance models with lme and gls Mar 5, 2012
Ben Bolker Covariance models with lme and gls Mar 6, 2012
error message using glmmadmb
8 msgs
Ben Bolker error message using glmmadmb Mar 1, 2012
Ben Bolker error message using glmmadmb Mar 1, 2012
RH Gibson, School Biological Sciences error message using glmmadmb Mar 5, 2012
RH Gibson, School Biological Sciences error message using glmmadmb Mar 5, 2012
Ben Bolker error message using glmmadmb Mar 5, 2012
RH Gibson, School Biological Sciences error message using glmmadmb Mar 5, 2012
Ben Bolker error message using glmmadmb Mar 5, 2012
RH Gibson, School Biological Sciences error message using glmmadmb Mar 5, 2012
Family specification - MCMCglmm survival analysis
2 msgs
Steven Brady Family specification - MCMCglmm survival analysis Mar 3, 2012
Jarrod Hadfield Family specification - MCMCglmm survival analysis Mar 4, 2012
Fit SGLMM by lme4 package
3 msgs
Douglas Bates Fit SGLMM by lme4 package Mar 3, 2012
John Maindonald Fit SGLMM by lme4 package Mar 3, 2012
Andrew Robinson Fit SGLMM by lme4 package Mar 3, 2012
Bleeding edge lme4 (or lme4a) plus DF estimation
4 msgs
Joehanes, Roby (NIH/NHLBI) [F] Bleeding edge lme4 (or lme4a) plus DF estimation Mar 1, 2012
Ben Bolker Bleeding edge lme4 (or lme4a) plus DF estimation Mar 1, 2012
Joehanes, Roby (NIH/NHLBI) [F] Bleeding edge lme4 (or lme4a) plus DF estimation Mar 1, 2012
Ben Bolker Bleeding edge lme4 (or lme4a) plus DF estimation Mar 1, 2012
decimal data with nested random effects
1 msg
Ben Bolker decimal data with nested random effects Mar 1, 2012
glmmADMB package
3 msgs
Robert Laforge glmmADMB package Mar 1, 2012
Joshua Wiley glmmADMB package Mar 1, 2012
Ben Bolker glmmADMB package Mar 1, 2012
Contribution to lme4Eigen
7 msgs
Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Mar 1, 2012
Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Mar 1, 2012
Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Mar 1, 2012
Ben Bolker Contribution to lme4Eigen Mar 1, 2012
Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Mar 1, 2012
Joehanes, Roby (NIH/NHLBI) [F] PedigreeMM question Mar 1, 2012
David Duffy PedigreeMM question Mar 1, 2012
General question about GLMM and heterogeneity of variance
1 msg
Chris Howden General question about GLMM and heterogeneity of variance Mar 1, 2012
partner
2 msgs
rajibul islam partner Mar 1, 2012
Douglas Bates partner Mar 1, 2012
Comparison of random coefficients between groups
1 msg
Chang Seok Han Comparison of random coefficients between groups Mar 1, 2012
decimal data with nested random effects
1 msg