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R-SIG-mixed-models March 2012

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Saturday, March 31, 2012 1 email
Ray Danner MCMC model selection reference
Friday, March 30, 2012 8 emails
Boris Shor lme4a installation Joshua Wiley extracting gradient and hessian matrix from lme4 Ben Bolker crossed effects with lmer but correlation structure with lme Brent Pedersen error on example Vasco Cadavez Is anyone using the lmList() function in the lme4 package? Denis Vile crossed effects with lmer but correlation structure with lme Gabor Grothendieck problems to install glmmADMB Natalia Vizcaíno Palomar problems to install glmmADMB
Thursday, March 29, 2012 12 emails
Ben Bolker error on example Brent Pedersen error on example Roger Levy Help understanding residual variance Ben Bolker Help understanding residual variance Ista Zahn Help understanding residual variance Joshua Wiley Help understanding residual variance Markus Jäntti SUR in lmer Giulia Dotti Sani SUR in lmer Ista Zahn Help understanding residual variance Markus Jäntti SUR in lmer Giulia Dotti Sani SUR in lmer Denis Vile crossed effects with lmer but correlation structure with lme
Wednesday, March 28, 2012 16 emails
Reinhold Kliegl Help understanding residual variance Ista Zahn Help understanding residual variance Roger Levy Conflicting p-values from pvals.fnc Kenneth Takagi structure of a lmer code Ista Zahn structure of a lmer code Antonio P. Ramos coefplot2/glmmADMB Andrew Robinson coefplot2/glmmADMB Antoine TARDIF structure of a lmer code Antonio P. Ramos coefplot2/glmmADMB Andrzej coefplot2/glmmADMB Antonio P. Ramos coefplot2/glmmADMB Rajasimhan Rajagovindan discrepancy between paired t test and glht on lme models Ben Bolker coefplot2/glmmADMB Ben Bolker Dispersion parameter negbin1 in glmmADMB Dean Castillo Dispersion parameter negbin1 in glmmADMB Jarrod Hadfield question on MCMCglmm
Tuesday, March 27, 2012 8 emails
Bert Harris Zero inflated GAMM John Fox Anova table for glmm.admb objects Ben Bolker Anova table for glmm.admb objects Ista Zahn Help understanding residual variance Lívia Dorneles Audino What error distribution should I use? Thomas Merkling Anova table for glmm.admb objects Greg Snow Help understanding residual variance Hanna ten Brink Dispersion parameter negbin1 in glmmADMB
Monday, March 26, 2012 8 emails
Ista Zahn Help understanding residual variance Geoff Brookshire Conflicting p-values from pvals.fnc Ben Bolker Anova table for glmm.admb objects Jarrod Hadfield help with ordinal mixed model (reposted from r-help) Ben Bolker help with ordinal mixed model (reposted from r-help) Martin Maechler problem in the implementation of the function Ben Bolker problem in the implementation of the function emre karaman question on MCMCglmm
Sunday, March 25, 2012 1 email
Ivan Allaman Help ordinal mixed model!
Saturday, March 24, 2012 1 email
Emmanuel Charpentier covariances between non normal traits
Friday, March 23, 2012 4 emails
iwhite@staffmail.ed.ac.uk covariances between non normal traits Celine Teplitsky covariances between non normal traits ONKELINX, Thierry Back-transforming binomial standard errors Adam Hayward Back-transforming binomial standard errors
Thursday, March 22, 2012 4 emails
cristiana vieira problem in the implementation of the function "lmer" of the "lme4" package - Important Danson, Bryan glmm with a tweedie distribution Fredrik Nilsson modelling proportions, with aggregated data, and the new/old lme4 Lívia Dorneles Audino GLMM - how to consider temporal pseudo-replication in the analyses?
Wednesday, March 21, 2012 15 emails
Zhang,Yanwei glmm with a tweedie distribution Zhang,Yanwei glmm with a tweedie distribution Lívia Dorneles Audino Doubts about the construction of mixed models Lívia Dorneles Audino Doubts about the construction of mixed models Ben Bolker Anova/deviance table in glmmADMB Ryan King observation level random effects/kinship model Adam Smith modelling proportions, with aggregated data, and the new/old lme4 Danson, Bryan glmm with a tweedie distribution Adam Smith modelling proportions, with aggregated data, and the new/old lme4 Juan Santos coefplot2 package not available Joerg Luedicke Question regarding lme mixed model, error in case 1, not in case 2 Petter Hedberg Question regarding lme mixed model, error in case 1, not in case 2 Petter Hedberg Question regarding lme repeated measures error in case 1, but not case 2 David Duffy observation level random effects/kinship model Yves Rousselle observation level random effects/kinship model
Tuesday, March 20, 2012 9 emails
Ben Bolker glmm with a tweedie distribution Ben Bolker Anova/deviance table in glmmADMB John Fox Anova/deviance table in glmmADMB Thomas Merkling Anova/deviance table in glmmADMB Martin Schmettow repeated measures: lme(r) vs manova Danson, Bryan glmm with a tweedie distribution Ben Bolker glmm with a tweedie distribution Malcolm Fairbrother Wald tests GLMM with glmer Rubén Roa glmm with a tweedie distribution
Monday, March 19, 2012 16 emails
Bill Pikounis glmm with a tweedie distribution Zhang,Yanwei glmm with a tweedie distribution Bill Pikounis glmm with a tweedie distribution Nathan Lemoine repeated measures: lme(r) vs manova Ben Bolker glmm with a tweedie distribution Thomas Merkling Wald tests GLMM with glmer Danson, Bryan glmm with a tweedie distribution Tom Gijssels Conflicting p-values from pvals.fnc Ben Bolker extracting gradient and hessian matrix from lme4 Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Stuart Luppescu Unacceptibly high autocorrelation in MCMCglmm Joerg Luedicke modelling proportions, with aggregated data, and the new/old lme4 Nikky Specifying continuous covariates and predictors in lmer Danson, Bryan (no subject) Juliet Hannah observation level random effects/kinship model Fredrik Nilsson modelling proportions, with aggregated data, and the new/old lme4
Sunday, March 18, 2012 5 emails
Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Joerg Luedicke modelling proportions, with aggregated data, and the new/old lme4 Rolf Turner modelling proportions, with aggregated data, and the new/old lme4 Ben Bolker modelling proportions, with aggregated data, and the new/old lme4 Malcolm Fairbrother modelling proportions, with aggregated data, and the new/old lme4
Saturday, March 17, 2012 4 emails
Joshua Wiley extracting gradient and hessian matrix from lme4 Ben Bolker Poisson GLMM: where is the deviance? Luciano La Sala Poisson GLMM: where is the deviance? Jarrod Hadfield Unacceptibly high autocorrelation in MCMCglmm
Friday, March 16, 2012 6 emails
Stuart Luppescu Unacceptibly high autocorrelation in MCMCglmm Andrew Correia Measures of dispersion for random effects Douglas Bates multicore lmer: any changes since 2007? Michael Lawrence multicore lmer: any changes since 2007? Michael Lawrence multicore lmer: any changes since 2007? Gregor Didenko With glmmPQL Error in corFactor.corSpatial(object)
Thursday, March 15, 2012 5 emails
Douglas Bates Package name changes on the SVN repository at lme4.R-forge.R-project.org Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Douglas Bates help with lme4 Steven J. Pierce No need to handle between-group correlation structure in glmm in general? Alan Haynes a good book?
Wednesday, March 14, 2012 11 emails
Kevin Wright a good book? Saang-Yoon Hyun a good book? Gang Chen lme code Federico Calboli lme code Bhogal, Harkiran lme code Junyan Luo No need to handle between-group correlation structure in glmm in general? Steven J. Pierce No need to handle between-group correlation structure in glmm in general? Ryan King observation level random effects/kinship model Pelle Ingvarsson observation level random effects/kinship model Yves Rousselle observation level random effects/kinship model Rudolf Philippe Rohr issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme)
Tuesday, March 13, 2012 12 emails
Nicole Prause Specifying continuous covariates and predictors in lmer Ben Bolker how to write crossed and nested random effects in a model withanage Niroshan perera How to write crossed and nested random effects in a model Junyan Luo No need to handle between-group correlation structure in glmm in general? Jonas Klasen observation level random effects/kinship model Dean Castillo glmADMB mcmc output Ben Bolker observation level random effects/kinship model Ben Bolker glmADMB mcmc output Juliet Hannah observation level random effects/kinship model Ben Bolker lme4Eigen's bootMer & installing latest svn Chris Gast Incorrect reporting of variance component from weighted LMM with lme4? Douglas Bates (no subject)
Monday, March 12, 2012 5 emails
Douglas Bates Question on the glmer function of the lme4 R package Dean Castillo glmADMB mcmc output Danson, Bryan glmm with continuous data Ken Knoblauch lme4Eigen's bootMer & installing latest svn Feddag Mohand-Larbi Question on the glmer function of the lme4 R package
Sunday, March 11, 2012 2 emails
Dean Castillo glmmADMB mcmc output Jarrod Hadfield Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors
Saturday, March 10, 2012 2 emails
Dean Castillo glmmADMB mcmc output Michael Lawrence lme4Eigen's bootMer & installing latest svn
Friday, March 9, 2012 5 emails
Ben Bolker lme4Eigen's bootMer & installing latest svn Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Michael Lawrence lme4Eigen's bootMer & installing latest svn Jarrod Hadfield Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors Stephane Chantepie Bivariate animal models with both "ill-conditioned G/R structure" and "Mixed model equations singular" errors
Thursday, March 8, 2012 2 emails
Kay Cichini zero-inflation with mixed-effects, glmmADMB, and cloglog Ben Bolker zero-inflation with mixed-effects, glmmADMB, and cloglog
Wednesday, March 7, 2012 14 emails
Anne Bjorkman zero-inflation with mixed-effects, glmmADMB, and cloglog Charla Patterson Mixed Effects Logistic Regression Model and finding p-values Ben Bolker lmer/glmer standard error interpretation and visualization Ben Bolker lmer/glmer standard error interpretation and visualization Colin Wahl lmer/glmer standard error interpretation and visualization Ben Bolker Comparing the effect size of parameters across non-nested models with different outcomes Ben Bolker model comparison in glmmADMB Petersen, Isaac T Comparing the effect size of parameters across non-nested models with different outcomes Ben Bolker error message using glmmadmb RH Gibson, School Biological Sciences model comparison in glmmADMB amelie pinet error in nlme() ONKELINX, Thierry Quadratic with Random Offset in One Dimension ONKELINX, Thierry Question on the glmer function of the lme4 R package Jarrod Hadfield MCMCglmm: multivariate response with phylogenetic structure
Tuesday, March 6, 2012 8 emails
Kyle Edwards MCMCglmm: multivariate response with phylogenetic structure Simon Blomberg possible issue when incorporating a phylogenetic correlation structure (corPagel) in a linear mixed effect model (lme) Zhang,Yanwei zero-inflation with mixed-effects, glmmADMB, and cloglog Anne Bjorkman zero-inflation with mixed-effects, glmmADMB, and cloglog Ben Bolker error in nlme() Ben Bolker Covariance models with lme and gls Feddag Mohand-Larbi Question on the glmer function of the lme4 R package amelie pinet error in nlme()
Monday, March 5, 2012 7 emails
Student Stats Covariance models with lme and gls RH Gibson, School Biological Sciences error message using glmmadmb Ben Bolker error message using glmmadmb RH Gibson, School Biological Sciences error message using glmmadmb Ben Bolker error message using glmmadmb RH Gibson, School Biological Sciences error message using glmmadmb RH Gibson, School Biological Sciences error message using glmmadmb
Sunday, March 4, 2012 1 email
Jarrod Hadfield Family specification - MCMCglmm survival analysis
Saturday, March 3, 2012 5 emails
Andrew Robinson Fit SGLMM by lme4 package John Maindonald Fit SGLMM by lme4 package Douglas Bates Fit SGLMM by lme4 package Steven Brady Family specification - MCMCglmm survival analysis Chris Long Quadratic with Random Offset in One Dimension
Friday, March 2, 2012 2 emails
Ben Bolker error in nlme() amelie pinet error in nlme()
Thursday, March 1, 2012 21 emails
Ben Bolker Bleeding edge lme4 (or lme4a) plus DF estimation Ben Bolker decimal data with nested random effects Ben Bolker glmmADMB package David Duffy PedigreeMM question Joshua Wiley glmmADMB package Chris Howden General question about GLMM and heterogeneity of variance Joehanes, Roby (NIH/NHLBI) [F] PedigreeMM question Robert Laforge glmmADMB package Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Ben Bolker Contribution to lme4Eigen Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Joehanes, Roby (NIH/NHLBI) [F] Bleeding edge lme4 (or lme4a) plus DF estimation Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Joehanes, Roby (NIH/NHLBI) [F] Contribution to lme4Eigen Ben Bolker Bleeding edge lme4 (or lme4a) plus DF estimation Ben Bolker error message using glmmadmb Joehanes, Roby (NIH/NHLBI) [F] Bleeding edge lme4 (or lme4a) plus DF estimation Ben Bolker error message using glmmadmb Douglas Bates partner Chang Seok Han Comparison of random coefficients between groups rajibul islam partner