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R-SIG-mixed-models June 2012

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Help needed: Fitting and Simulating multilevel model in R.
5 msgs
Justice Moses K. Aheto Help needed: Fitting and Simulating multilevel model in R. Jun 30, 2012
Greg Snow Help needed: Fitting and Simulating multilevel model in R. Jun 30, 2012
Justice Moses K. Aheto Help needed: Fitting and Simulating multilevel model in R. Jun 30, 2012
Joshua Wiley Help needed: Fitting and Simulating multilevel model in R. Jun 30, 2012
Justice Moses K. Aheto Help needed: Fitting and Simulating multilevel model in R. Jun 30, 2012
"mixed" MANOVAs
2 msgs
Andrés Egea "mixed" MANOVAs Jun 29, 2012
Peter Dalgaard "mixed" MANOVAs Jun 30, 2012
warnings in lmer estimation after mice
3 msgs
Raquel Guimarães warnings in lmer estimation after mice Jun 29, 2012
Robert Long warnings in lmer estimation after mice Jun 30, 2012
Raquel Guimarães warnings in lmer estimation after mice Jun 30, 2012
Fitting multilevel model to a recipe and simulating the model.
2 msgs
Justice Moses K. Aheto Fitting multilevel model to a recipe and simulating the model. Jun 29, 2012
Federico Calboli Fitting multilevel model to a recipe and simulating the model. Jun 29, 2012
Post requested
1 msg
Stephanie L. Simek Post requested Jun 29, 2012
profile likelihood confidence interval
2 msgs
laurent stephane profile likelihood confidence interval Jun 29, 2012
laurent stephane profile likelihood confidence interval Jun 29, 2012
Weights
4 msgs
Francois Maurice Weights Jun 27, 2012
Alan Haynes Weights Jun 27, 2012
Ben Bolker Weights Jun 28, 2012
Markus Jäntti Weights Jun 28, 2012
Question of ineraction in LMM model
2 msgs
chenlei Question of ineraction in LMM model Jun 25, 2012
Paul Johnson Question of ineraction in LMM model Jun 27, 2012
Fitting random intercept model in R?
4 msgs
Michael Fitting random intercept model in R? Jun 22, 2012
Emmanuel Curis Fitting random intercept model in R? Jun 22, 2012
Michael Fitting random intercept model in R? Jun 25, 2012
Paul Johnson Fitting random intercept model in R? Jun 27, 2012
How to estimate variance components with lmer for models with random effects and compare them with lme results
2 msgs
KL How to estimate variance components with lmer for models with random effects and compare them with lme results Jun 26, 2012
Paul Johnson How to estimate variance components with lmer for models with random effects and compare them with lme results Jun 26, 2012
sas to R
13 msgs
Steve Hong sas to R Jun 25, 2012
Joshua Wiley sas to R Jun 25, 2012
Steve Hong sas to R Jun 25, 2012
Kevin Wright sas to R Jun 25, 2012
Steve Hong sas to R Jun 25, 2012
Douglas Bates sas to R Jun 25, 2012
Steve Hong sas to R Jun 25, 2012
Douglas Bates sas to R Jun 25, 2012
Steve Hong sas to R Jun 25, 2012
Jake Westfall sas to R Jun 25, 2012
Steve Hong sas to R Jun 25, 2012
Ben Bolker sas to R Jun 26, 2012
Steve Hong sas to R Jun 26, 2012
need help with predicted values from lmer with newdata
9 msgs
Paul Johnson need help with predicted values from lmer with newdata Jun 21, 2012
Joshua Wiley need help with predicted values from lmer with newdata Jun 22, 2012
Ben Pelzer 2-level null versus 1 level null model Jun 22, 2012
Paul Johnson need help with predicted values from lmer with newdata Jun 22, 2012
Joshua Wiley need help with predicted values from lmer with newdata Jun 22, 2012
David Duffy 2-level null versus 1 level null model Jun 22, 2012
Ben Bolker need help with predicted values from lmer with newdata Jun 23, 2012
Joshua Wiley need help with predicted values from lmer with newdata Jun 24, 2012
Paul Johnson need help with predicted values from lmer with newdata Jun 25, 2012
Running multinomial models with random effects
3 msgs
florian.wickelmaier at uni-tuebingen.de Running multinomial models with random effects Jun 7, 2012
MORAN LOPEZ, TERESA Running multinomial models with random effects Jun 25, 2012
MORAN LOPEZ, TERESA Running multinomial models with random effects Jun 25, 2012
(no subject)
2 msgs
Melanie Browne (no subject) Jun 24, 2012
Ben Bolker (no subject) Jun 25, 2012
STD file not found error with glmmADMB
3 msgs
Melanie Browne STD file not found error with glmmADMB Jun 24, 2012
Joshua Wiley STD file not found error with glmmADMB Jun 24, 2012
Ben Bolker STD file not found error with glmmADMB Jun 25, 2012
Multilevel Ordinal Logistic Regression: clmm warnings
3 msgs
Nicholas Sabin Multilevel Ordinal Logistic Regression: clmm warnings Jun 23, 2012
David Duffy Multilevel Ordinal Logistic Regression: clmm warnings Jun 24, 2012
Rune Haubo Multilevel Ordinal Logistic Regression: clmm warnings Jun 24, 2012
meaning of the use.u argument in bootMer and simulateMerMod (Ben Bolker)
1 msg
Simon Chamaillé-Jammes meaning of the use.u argument in bootMer and simulateMerMod (Ben Bolker) Jun 24, 2012
lme random effects in additive models with interaction
1 msg
elifnurdogruoz at mynet.com lme random effects in additive models with interaction Jun 24, 2012
crash with the latest update of lme4
1 msg
laurent stephane crash with the latest update of lme4 Jun 24, 2012
lme random effects in additive models with interaction
2 msgs
elifnurdogruoz at mynet.com lme random effects in additive models with interaction Jun 23, 2012
Ben Bolker lme random effects in additive models with interaction Jun 23, 2012
meaning of the use.u argument in bootMer and simulateMerMod
4 msgs
Simon Chamaillé-Jammes meaning of the use.u argument in bootMer and simulateMerMod Jun 22, 2012
laurent stephane meaning of the use.u argument in bootMer and simulateMerMod Jun 23, 2012
Simon Chamaillé-Jammes meaning of the use.u argument in bootMer and simulateMerMod Jun 23, 2012
Ben Bolker meaning of the use.u argument in bootMer and simulateMerMod Jun 23, 2012
Matrix of predicted values using lme or lmer
2 msgs
Matthew Smith Matrix of predicted values using lme or lmer Jun 22, 2012
Ben Bolker Matrix of predicted values using lme or lmer Jun 23, 2012
lme4, Irtrees, and Outcomes Measured at Multiple and Nested Levels of Geography and Time
2 msgs
Rex W. Douglass lme4, Irtrees, and Outcomes Measured at Multiple and Nested Levels of Geography and Time Jun 21, 2012
David Duffy lme4, Irtrees, and Outcomes Measured at Multiple and Nested Levels of Geography and Time Jun 22, 2012
two trials of RCBD with subsampling
1 msg
Steve Hong two trials of RCBD with subsampling Jun 22, 2012
Understanding/plotting fixed effects estimates & standard errors
7 msgs
Rafael Maia Understanding/plotting fixed effects estimates & standard errors Jun 21, 2012
David Duffy Understanding/plotting fixed effects estimates &standard errors Jun 21, 2012
Rafael Maia Understanding/plotting fixed effects estimates &standard errors Jun 21, 2012
Paul Johnson Understanding/plotting fixed effects estimates &standard errors Jun 21, 2012
Rafael Maia Understanding/plotting fixed effects estimates &standard errors Jun 21, 2012
David Duffy Understanding/plotting fixed effects estimates &standard errors Jun 21, 2012
Paul Johnson Understanding/plotting fixed effects estimates &standard errors Jun 22, 2012
Do glmer and glmmadmb calculate log likelihood on the same scale ?
6 msgs
Simon Chamaillé-Jammes Do glmer and glmmadmb calculate log likelihood on the same scale ? Jun 21, 2012
David Duffy Do glmer and glmmadmb calculate log likelihood on thesame scale ? Jun 21, 2012
Joshua Wiley Do glmer and glmmadmb calculate log likelihood on thesame scale ? Jun 21, 2012
David Duffy Do glmer and glmmadmb calculate log likelihood on thesame scale ? Jun 21, 2012
Simon Chamaillé-Jammes Do glmer and glmmadmb calculate log likelihood on thesame scale ? Jun 22, 2012
Joshua Wiley Do glmer and glmmadmb calculate log likelihood on thesame scale ? Jun 22, 2012
lme4 Installation on R 2.13.2
2 msgs
Anshul Gupta lme4 Installation on R 2.13.2 Jun 22, 2012
Roman Luštrik lme4 Installation on R 2.13.2 Jun 22, 2012
Zero-inflated mixed effects model - clarification of zeros modeled and R package questions
2 msgs
Jennifer Barrett Zero-inflated mixed effects model - clarification of zeros modeled and R package questions Jun 20, 2012
Paul Johnson Zero-inflated mixed effects model - clarification of zeros modeled and R package questions Jun 21, 2012
Zero-inflated mixed effects models: random effects / "function maximizer failed"?
1 msg
Kirsty E. B. Gurney Zero-inflated mixed effects models: random effects / "function maximizer failed"? Jun 21, 2012
How to include autocorrelation in GLMM and what to do with, false convergence warning message appearing after including an, interaction term (Lucia)
1 msg
Highland Statistics Ltd How to include autocorrelation in GLMM and what to do with, false convergence warning message appearing after including an, interaction term (Lucia) Jun 21, 2012
How to include autocorrelation in GLMM and what to do with, false convergence warning message appearing after including an, interaction term (Lucia)
2 msgs
Highland Statistics Ltd How to include autocorrelation in GLMM and what to do with, false convergence warning message appearing after including an, interaction term (Lucia) Jun 20, 2012
Jake Westfall How to include autocorrelation in GLMM and what to do with, false convergence warning message appearing after including an, interaction term (Lucia) Jun 20, 2012
Zero-inflated mixed effects model - clarification, of zeros modeled and R package questions
1 msg
Highland Statistics Ltd Zero-inflated mixed effects model - clarification, of zeros modeled and R package questions Jun 20, 2012
binomial GLMM with small upper limit
2 msgs
Wojdak, Jeremy binomial GLMM with small upper limit Jun 20, 2012
David Duffy binomial GLMM with small upper limit Jun 20, 2012
How to include autocorrelation in GLMM and what to do with false convergence warning message appearing after including an interaction term
3 msgs
Lucia How to include autocorrelation in GLMM and what to do with false convergence warning message appearing after including an interaction term Jun 20, 2012
Lucia How to include autocorrelation in GLMM and what to do with false convergence warning message appearing after including an interaction term Jun 20, 2012
Luca Borger How to include autocorrelation in GLMM and what to do with false convergence warning message appearing after including an interaction term Jun 20, 2012
Random effects in glmmADMB
2 msgs
Kirsty E. B. Gurney Random effects in glmmADMB Jun 19, 2012
Joshua Wiley Random effects in glmmADMB Jun 19, 2012
Extract a variance estimate per level of random effect
6 msgs
Samantha Patrick Extract a variance estimate per level of random effect Jun 18, 2012
Alecia Carter Extract a variance estimate per level of random effect Jun 18, 2012
Luca Borger Extract a variance estimate per level of random effect Jun 18, 2012
Alan Haynes Extract a variance estimate per level of random effect Jun 18, 2012
Luca Borger Extract a variance estimate per level of random effect Jun 18, 2012
Samantha Patrick Extract a variance estimate per level of random effect Jun 19, 2012
Extract a variance estimate per level of random effect
1 msg
Beatriz De Francisco Extract a variance estimate per level of random effect Jun 19, 2012
how to get posterior simulations of the variance components with mcmcsamp() ?
1 msg
laurent stephane how to get posterior simulations of the variance components with mcmcsamp() ? Jun 19, 2012
Bayesian Inference on Variance Components
6 msgs
Yi (Charlie) Chen Bayesian Inference on Variance Components Jun 13, 2012
Kevin Wright Bayesian Inference on Variance Components Jun 13, 2012
David Duffy Bayesian Inference on Variance Components Jun 13, 2012
Will Morris Bayesian Inference on Variance Components Jun 13, 2012
laurent stephane Re : Bayesian Inference on Variance Components Jun 14, 2012
laurent stephane Re : Bayesian Inference on Variance Components Jun 18, 2012
Bootstrapping glmer random effects
7 msgs
Joe King Bootstrapping glmer random effects Jun 15, 2012
David Duffy Bootstrapping glmer random effects Jun 16, 2012
Ali Nasiri Amini Bootstrapping glmer random effects Jun 16, 2012
Joe King Bootstrapping glmer random effects Jun 17, 2012
Cornelia Oedekoven Bootstrapping glmer random effects Jun 17, 2012
Joe King Bootstrapping glmer random effects Jun 17, 2012
Ian Dworkin Bootstrapping glmer random effects Jun 18, 2012
Mean separation test in lmer/glmer models
3 msgs
Bin Liu Mean separation test in lmer/glmer models Jun 15, 2012
Alan Haynes Mean separation test in lmer/glmer models Jun 15, 2012
fernando barbero Mean separation test in lmer/glmer models Jun 18, 2012
spatial correlation structure in nlme
2 msgs
Gary Dong spatial correlation structure in nlme Jun 16, 2012
Luca Borger spatial correlation structure in nlme Jun 18, 2012
0-inflated GLMM in R
3 msgs
Katarzyna Kulma 0-inflated GLMM in R Jun 15, 2012
David Atkins 0-inflated GLMM in R Jun 15, 2012
Ben Bolker 0-inflated GLMM in R Jun 16, 2012
MCMCglmm variance query
1 msg
Thomas Houslay MCMCglmm variance query Jun 15, 2012
mcmcglmm and parallel chains
3 msgs
Hans Ekbrand mcmcglmm and parallel chains Jun 12, 2012
Ben Bolker mcmcglmm and parallel chains Jun 13, 2012
Dale Steele mcmcglmm and parallel chains Jun 14, 2012
Plotting interactions from lme with ggplot
2 msgs
Petersen, Isaac T Plotting interactions from lme with ggplot Jun 13, 2012
ONKELINX, Thierry Plotting interactions from lme with ggplot Jun 14, 2012
BLUPs in relation to fixed effect interaction
3 msgs
Bunnefeld, Nils BLUPs in relation to fixed effect interaction Jun 13, 2012
Luca Borger BLUPs in relation to fixed effect interaction Jun 13, 2012
Bunnefeld, Nils BLUPs in relation to fixed effect interaction Jun 14, 2012
Bayesian Inference on Variance Components
1 msg
Simon Chamaillé-Jammes Bayesian Inference on Variance Components Jun 14, 2012
Error with glmmADMB and beta distribution
3 msgs
Heather Kharouba Error with glmmADMB and beta distribution Jun 12, 2012
Ben Bolker Error with glmmADMB and beta distribution Jun 13, 2012
Heather Kharouba Error with glmmADMB and beta distribution Jun 13, 2012
Repeated Measures MANOVA in R
1 msg
Matthew Smith Repeated Measures MANOVA in R Jun 13, 2012
Avoid errors in pwrssUpdate ?
4 msgs
Pierre Morel Avoid errors in pwrssUpdate ? Jun 13, 2012
Ben Bolker Avoid errors in pwrssUpdate ? Jun 13, 2012
Pierre Morel Avoid errors in pwrssUpdate ? Jun 13, 2012
Ken Knoblauch Avoid errors in pwrssUpdate ? Jun 13, 2012
cozigam
2 msgs
Ben Bolker cozigam Jun 13, 2012
Ben Bolker cozigam Jun 13, 2012
Random-Intercept Random-Slope Models
2 msgs
Eiko Fried Random-Intercept Random-Slope Models Jun 12, 2012
Joshua Wiley Random-Intercept Random-Slope Models Jun 12, 2012
Mixed-effects model with varying slope and intercept (multiple regression)
2 msgs
Tommaso Jucker Mixed-effects model with varying slope and intercept (multiple regression) Jun 12, 2012
ONKELINX, Thierry Mixed-effects model with varying slope and intercept (multiple regression) Jun 12, 2012
lme4, cloglog vs. binomial link (peter dalgaard)
5 msgs
Murray Jorgensen lme4, cloglog vs. binomial link (peter dalgaard) Jun 6, 2012
Peter Dalgaard lme4, cloglog vs. binomial link (peter dalgaard) Jun 8, 2012
Murray Jorgensen lme4, cloglog vs. binomial link (peter dalgaard) Jun 10, 2012
Peter Dalgaard lme4, cloglog vs. binomial link (peter dalgaard) Jun 11, 2012
Murray Jorgensen lme4, cloglog vs. binomial link (peter dalgaard) Jun 11, 2012
LME: is the Gaussian distribution sensitive to outliers?
1 msg
Michael LME: is the Gaussian distribution sensitive to outliers? Jun 8, 2012
contrasts in lmer models
3 msgs
Frei Esther contrasts in lmer models Jun 6, 2012
fernando barbero contrasts in lmer models Jun 7, 2012
Frei Esther contrasts in lmer models Jun 7, 2012
R-sig-mixed-models Digest, Vol 66, Issue 11
1 msg
Malcolm Fairbrother R-sig-mixed-models Digest, Vol 66, Issue 11 Jun 7, 2012
Running multinomial models with random effects
3 msgs
MORAN LOPEZ, TERESA Running multinomial models with random effects Jun 6, 2012
Chris Howden Running multinomial models with random effects Jun 6, 2012
MORAN LOPEZ, TERESA Running multinomial models with random effects Jun 7, 2012
lme4, cloglog vs. binomial link
3 msgs
Tibor Kiss lme4, cloglog vs. binomial link Jun 4, 2012
David Duffy lme4, cloglog vs. binomial link Jun 4, 2012
Peter Dalgaard lme4, cloglog vs. binomial link Jun 6, 2012
interpretation of main effect when interaction term being significant (ex. lme)
2 msgs
Ron Stone interpretation of main effect when interaction term being significant (ex. lme) Jun 6, 2012
David Winsemius interpretation of main effect when interaction term being significant (ex. lme) Jun 6, 2012
R-sig-mixed-models Digest, Vol 66, Issue 8
1 msg
John.Morrongiello at csiro.au R-sig-mixed-models Digest, Vol 66, Issue 8 Jun 5, 2012
bug in predict.lme ?
1 msg
Antonio P. Ramos bug in predict.lme ? Jun 5, 2012
HPD intervals for fixed parameters in model
4 msgs
John.Morrongiello at csiro.au HPD intervals for fixed parameters in model Jun 4, 2012
Ben Bolker HPD intervals for fixed parameters in model Jun 4, 2012
John.Morrongiello at csiro.au HPD intervals for fixed parameters in model Jun 4, 2012
Ben Bolker HPD intervals for fixed parameters in model Jun 5, 2012
Caterpillarplots that compares two models
1 msg
Hans Ekbrand Caterpillarplots that compares two models Jun 4, 2012
variance components (and confidence intervals) for both fixed and random effects
1 msg
Dylan Craven variance components (and confidence intervals) for both fixed and random effects Jun 4, 2012
glmmPQL Question
1 msg
Ben Bolker glmmPQL Question Jun 4, 2012
getting between groups variance when using (1|x:y)in the formula
2 msgs
Ben Bolker getting between groups variance when using (1|x:y)in the formula Jun 1, 2012
Hans Ekbrand getting between groups variance when using (1|x:y)in the formula Jun 4, 2012
glmmPQL Question
3 msgs
John Michel glmmPQL Question Jun 4, 2012
Ben Bolker glmmPQL Question Jun 4, 2012
Ben Bolker glmmPQL Question Jun 4, 2012
multiple variance structure in lmer giving zero variances
4 msgs
Sara Krause multiple variance structure in lmer giving zero variances Jun 2, 2012
Ben Bolker multiple variance structure in lmer giving zero variances Jun 3, 2012
Sara Krause multiple variance structure in lmer giving zero variances Jun 3, 2012
Ben Bolker multiple variance structure in lmer giving zero variances Jun 4, 2012
crossed random
1 msg
Sara Krause crossed random Jun 2, 2012
Using R, how to present mixed models vs. regular linear regression models?
1 msg
Paul Johnson Using R, how to present mixed models vs. regular linear regression models? Jun 2, 2012
Using R, how to present mixed models vs. regular linear regression models?
1 msg
Ben Bolker Using R, how to present mixed models vs. regular linear regression models? Jun 1, 2012
HPD intervals for fixed parameters in model with crossed and correlated random effects
1 msg
Ben Bolker HPD intervals for fixed parameters in model with crossed and correlated random effects Jun 1, 2012
Testing out glmmADMB
1 msg
Ben Bolker Testing out glmmADMB Jun 1, 2012
Problem in simulate() with GLMMs when a link function is specified ?
1 msg
Ben Bolker Problem in simulate() with GLMMs when a link function is specified ? Jun 1, 2012
specifying priors in MCMCglmm with interactions inside random effects,
1 msg