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R-SIG-mixed-models September 2012

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nlme-function: Step halving factor reduced below minimum in PNLS step
2 msgs
Christof Kluß nlme-function: Step halving factor reduced below minimum in PNLS step Sep 26, 2012
Ben Bolker nlme-function: Step halving factor reduced below minimum in PNLS step Sep 30, 2012
nlme vs nlmer
2 msgs
Christof Kluß nlme vs nlmer Sep 28, 2012
Ben Bolker nlme vs nlmer Sep 30, 2012
Subject-wise log-likelihood gradient and hessian
2 msgs
Rubem Kaipper Ceratti Subject-wise log-likelihood gradient and hessian Sep 30, 2012
Ben Bolker Subject-wise log-likelihood gradient and hessian Sep 30, 2012
Two Questions re: Piecewise Mixed Effects Models
3 msgs
Lofgren, Eric Two Questions re: Piecewise Mixed Effects Models Sep 30, 2012
Albyn Jones Two Questions re: Piecewise Mixed Effects Models Sep 30, 2012
Joshua Wiley Two Questions re: Piecewise Mixed Effects Models Sep 30, 2012
Sampling methods for MCMCglmm using cengaussian family
4 msgs
Robin Jeffries Sampling methods for MCMCglmm using cengaussian family Sep 29, 2012
Joshua Wiley Sampling methods for MCMCglmm using cengaussian family Sep 30, 2012
Robin Jeffries Sampling methods for MCMCglmm using cengaussian family Sep 30, 2012
Joshua Wiley Sampling methods for MCMCglmm using cengaussian family Sep 30, 2012
Two Questions re: Piecewise mixed effects models
1 msg
Lofgren, Eric Two Questions re: Piecewise mixed effects models Sep 30, 2012
cross classified random effect model
2 msgs
Kasongo, Webster cross classified random effect model Sep 27, 2012
Freedom Gumedze gls or lme with unstructured covariance martrix Sep 29, 2012
MCMCglmm: correctly estimating phylogenetic heritability
1 msg
Stott, Iain MCMCglmm: correctly estimating phylogenetic heritability Sep 28, 2012
nlme random effect
1 msg
Douglas Bates nlme random effect Sep 27, 2012
cross-classified random effect model
1 msg
Webster Kasongo cross-classified random effect model Sep 27, 2012
cross-classified random effects model R code for empirical bayes
1 msg
Douglas Bates cross-classified random effects model R code for empirical bayes Sep 27, 2012
questions about the nlme model in R
1 msg
Margo Law questions about the nlme model in R Sep 27, 2012
questions about the nlme model in R
1 msg
Douglas Bates questions about the nlme model in R Sep 27, 2012
Seemingly Unrelated Regression in lme4
3 msgs
Stephen Jones Seemingly Unrelated Regression in lme4 Sep 21, 2012
Giulia Dotti Sani Seemingly Unrelated Regression in lme4 Sep 24, 2012
Stephen Jones Seemingly Unrelated Regression in lme4 Sep 26, 2012
Priors for and estimating heritability from an ordinal and a Poisson animal model
4 msgs
Helen Ward Priors for and estimating heritability from an ordinal and a Poisson animal model Sep 6, 2012
Helen Ward Priors for and estimating heritability from an ordinal and a Poisson animal model Sep 25, 2012
David Duffy Priors for and estimating heritability from an ordinal and a Poisson animal model Sep 25, 2012
Pierre de Villemereuil Priors for and estimating heritability from an ordinal and a Poisson animal model Sep 26, 2012
Interpreting the output of summary() of a glmer-object
5 msgs
Hans Ekbrand Interpreting the output of summary() of a glmer-object Sep 24, 2012
Ben Bolker Interpreting the output of summary() of a glmer-object Sep 24, 2012
Hans Ekbrand Interpreting the output of summary() of a glmer-object Sep 25, 2012
Ben Bolker Interpreting the output of summary() of a glmer-object Sep 25, 2012
Hans Ekbrand Interpreting the output of summary() of a glmer-object Sep 25, 2012
'Missing' tests for lmer models
2 msgs
Luke Duncan 'Missing' tests for lmer models Sep 25, 2012
David Duffy 'Missing' tests for lmer models Sep 25, 2012
Random effects in a nested factorial design - Problems understanding the effect of reference categories
1 msg
michael.zombok at googlemail.com Random effects in a nested factorial design - Problems understanding the effect of reference categories Sep 22, 2012
Multivariate mixed models
1 msg
Ingleby, Fiona Multivariate mixed models Sep 22, 2012
R-sig-mixed-models Digest, Vol 69, Issue 18
2 msgs
Kumiko Fukumura R-sig-mixed-models Digest, Vol 69, Issue 18 Sep 20, 2012
Ben Bolker R-sig-mixed-models Digest, Vol 69, Issue 18 Sep 21, 2012
A modeling question for the ecologists
4 msgs
Jeremy Koster A modeling question for the ecologists Sep 20, 2012
Baldwin, Jim -FS A modeling question for the ecologists Sep 20, 2012
Jeremy Koster A modeling question for the ecologists Sep 20, 2012
Jeremy Koster A modeling question for the ecologists Sep 21, 2012
Intra-individual variation over time
1 msg
Eiko Fried Intra-individual variation over time Sep 21, 2012
model averaging
2 msgs
Paul York model averaging Sep 19, 2012
Ben Bolker model averaging Sep 20, 2012
calculating number of parameters for AICc
1 msg
Murray Jorgensen calculating number of parameters for AICc Sep 20, 2012
Cumulative link mixed model appropriate in a 2x4 design?
4 msgs
Klemens Weigl Cumulative link mixed model appropriate in a 2x4 design? Sep 12, 2012
Jarrod Hadfield Cumulative link mixed model appropriate in a 2x4 design? Sep 13, 2012
Klemens Weigl Cumulative link mixed model appropriate in a 2x4 design? Sep 20, 2012
Rune Haubo Cumulative link mixed model appropriate in a 2x4 design? Sep 20, 2012
calculating number of parameters for AICc
3 msgs
Jude Phillips calculating number of parameters for AICc Sep 18, 2012
Paul Johnson MCMC mixed models for genetic parameters Sep 19, 2012
Ben Bolker calculating number of parameters for AICc Sep 19, 2012
mixed models with two random variables?
4 msgs
Malcolm Fairbrother mixed models with two random variables? Sep 15, 2012
barbara costa mixed models with two random variables? Sep 17, 2012
Malcolm Fairbrother mixed models with two random variables? Sep 18, 2012
barbara costa mixed models with two random variables? Sep 18, 2012
Origins of difference in significance between lmer/pvals.fnc and aov?
1 msg
Dan Ruderman Origins of difference in significance between lmer/pvals.fnc and aov? Sep 17, 2012
examples of combining chains from MCMCglmm
1 msg
Joshua Wiley examples of combining chains from MCMCglmm Sep 16, 2012
mixed models with two random variables?
1 msg
barbara costa mixed models with two random variables? Sep 14, 2012
Split plot (with repeated measure?)
2 msgs
Mike Palmer Split plot (with repeated measure?) Sep 14, 2012
Thompson,Paul Split plot (with repeated measure?) Sep 14, 2012
model definition issues for repeat measures
2 msgs
Caroline model definition issues for repeat measures Sep 12, 2012
Ben Bolker model definition issues for repeat measures Sep 13, 2012
sparse Matrix from phylo object in MCMCglmm
3 msgs
Luis Verde sparse Matrix from phylo object in MCMCglmm Sep 7, 2012
Jarrod Hadfield sparse Matrix from phylo object in MCMCglmm Sep 11, 2012
Luis Verde sparse Matrix from phylo object in MCMCglmm Sep 13, 2012
3-level fixed factor in lme4
2 msgs
Obermeier Andrew 3-level fixed factor in lme4 Sep 12, 2012
Alan Haynes 3-level fixed factor in lme4 Sep 13, 2012
Question on significancy of terms
3 msgs
Leonel Lopez Question on significancy of terms Sep 11, 2012
Emmanuel Curis Question on significancy of terms Sep 12, 2012
Geoff Brookshire Question on significancy of terms Sep 12, 2012
nlme model.matrix problem for prediction intervals
2 msgs
Andrew Close nlme model.matrix problem for prediction intervals Sep 11, 2012
Ben Bolker nlme model.matrix problem for prediction intervals Sep 12, 2012
Is there an R function for GLMM with binary, response, nested random factors, and temporal correlation?
1 msg
Andrew Digby Is there an R function for GLMM with binary, response, nested random factors, and temporal correlation? Sep 11, 2012
Heterogeneous (co)variances in a bivariate model with MCMCglmm?
5 msgs
Vincent Careau Heterogeneous (co)variances in a bivariate model with MCMCglmm? Sep 5, 2012
David Atkins Heterogeneous (co)variances in a bivariate model with MCMCglmm? Sep 6, 2012
Vincent Careau Heterogeneous (co)variances in a bivariate model with MCMCglmm? Sep 6, 2012
David Atkins Heterogeneous (co)variances in a bivariate model with MCMCglmm? Sep 6, 2012
Jarrod Hadfield Heterogeneous (co)variances in a bivariate model with MCMCglmm? Sep 11, 2012
Characterizing correlation between binomial effects
5 msgs
Michael Lawrence Characterizing correlation between binomial effects Sep 5, 2012
Michael Lawrence Characterizing correlation between binomial effects Sep 6, 2012
Jake Westfall Characterizing correlation between binomial effects Sep 6, 2012
David Duffy Characterizing correlation between binomial effects Sep 9, 2012
Viechtbauer Wolfgang (STAT) Characterizing correlation between binomial effects Sep 11, 2012
MixMod lsmeans question
3 msgs
Alexandra Kuznetsova MixMod lsmeans question Sep 10, 2012
guillaume chaumet MixMod lsmeans question Sep 10, 2012
Alexandra Kuznetsova MixMod lsmeans question Sep 11, 2012
mcmcsamp with Poisson distribution
2 msgs
Nate Fronk mcmcsamp with Poisson distribution Sep 6, 2012
Ben Bolker mcmcsamp with Poisson distribution Sep 9, 2012
MixMod lsmeans question
2 msgs
guillaume chaumet MixMod lsmeans question Sep 8, 2012
Ben Bolker MixMod lsmeans question Sep 9, 2012
Pearson residuals in R2jags
1 msg
Andrew Digby Pearson residuals in R2jags Sep 7, 2012
help for HLM
2 msgs
Karina Villegas help for HLM Sep 5, 2012
Douglas Bates help for HLM Sep 5, 2012
Help
3 msgs
Julie Webbs Help Sep 4, 2012
Federico Calboli Help Sep 5, 2012
Douglas Bates Help Sep 5, 2012
multi-environments trial : how to take into account different residual variances ?
1 msg
DUYME Florent multi-environments trial : how to take into account different residual variances ? Sep 5, 2012
Using weights properly in lmer
1 msg
Joehanes, Roby (NIH/NHLBI) [F] Using weights properly in lmer Sep 5, 2012
False convergence when running lmer with Zelig example for gamma.mixed
1 msg
Martin Schmettow False convergence when running lmer with Zelig example for gamma.mixed Sep 5, 2012
Phylogenetic Logistic Regression + MCMCglmm
3 msgs
Jarrod Hadfield Phylogenetic Logistic Regression + MCMCglmm Sep 1, 2012
Joanna L Baker Phylogenetic Logistic Regression + MCMCglmm Sep 3, 2012
Jarrod Hadfield Phylogenetic Logistic Regression + MCMCglmm Sep 4, 2012
AUTO: New email address for Dave LeBlond: david.leblond@sbcglobal.net
2 msgs
David LeBlond AUTO: New email address for Dave LeBlond: david.leblond@sbcglobal.net Sep 3, 2012
Jake Westfall AUTO: New email address for Dave LeBlond: david.leblond@sbcglobal.net Sep 3, 2012
MCMCglmm multinomial logit
1 msg
Jackson King MCMCglmm multinomial logit Sep 2, 2012
AUTO: New email address for Dave LeBlond: david.leblond@sbcglobal.net
1 msg
David LeBlond AUTO: New email address for Dave LeBlond: david.leblond@sbcglobal.net Sep 2, 2012
MCMCglmm poisson / not poisson
1 msg
Mikhail Matz MCMCglmm poisson / not poisson Sep 1, 2012
Split plot design with repeated measures - model errors (nlme)
1 msg
iwhite@staffmail.ed.ac.uk Split plot design with repeated measures - model errors (nlme) Sep 1, 2012
RStan: Fast, multilevel Bayesian modeling in R
1 msg
Michael Lawrence RStan: Fast, multilevel Bayesian modeling in R Sep 1, 2012
ordinal multilevel model
1 msg
Kari Ruohonen ordinal multilevel model Sep 1, 2012
Split plot design with repeated measures - model errors (nlme)
1 msg