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R-SIG-mixed-models October 2012

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problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB
6 msgs
Pablo Inchausti problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
Douglas Bates problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
Pablo Inchausti problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
Douglas Bates problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
Pablo Inchausti problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
Luca Borger problems fitting GLMM poisson with cross random effects in lme4 and glmmADMB Oct 31, 2012
lmer and log link
3 msgs
Hugh Sturrock lmer and log link Oct 31, 2012
Douglas Bates lmer and log link Oct 31, 2012
David Winsemius lmer and log link Oct 31, 2012
convergence in GLMM (lme4 package)
4 msgs
Martí Casals convergence in GLMM (lme4 package) Oct 23, 2012
Ben Bolker convergence in GLMM (lme4 package) Oct 23, 2012
Martí Casals convergence in GLMM (lme4 package) Oct 23, 2012
Martí Casals convergence in GLMM (lme4 package) Oct 31, 2012
problems in fitting GLMM Poisson with crossed random effects in both lme4 and glmmADMB
1 msg
Pablo Inchausti problems in fitting GLMM Poisson with crossed random effects in both lme4 and glmmADMB Oct 31, 2012
R-square in lme
1 msg
Highland Statistics Ltd R-square in lme Oct 31, 2012
lmer: No significant coefficients, but significant improvement of model fit?
1 msg
r-sig-mixed-models at gjyp.nl lmer: No significant coefficients, but significant improvement of model fit? Oct 31, 2012
Heritability of ordinal data in MCMCglmm and estimating fixed effects
3 msgs
Samantha Patrick Heritability of ordinal data in MCMCglmm and estimating fixed effects Oct 29, 2012
David Duffy Heritability of ordinal data in MCMCglmm and estimatingfixed effects Oct 30, 2012
Samantha Patrick Heritability of ordinal data in MCMCglmm and estimatingfixed effects Oct 31, 2012
weighting observations in a MCMCglmm model?
1 msg
Malcolm Fairbrother weighting observations in a MCMCglmm model? Oct 30, 2012
R-square in lme
2 msgs
Sylvia Opriessnig R-square in lme Oct 30, 2012
Alan Haynes R-square in lme Oct 30, 2012
help with lme
1 msg
Sylvia Opriessnig help with lme Oct 30, 2012
error question
3 msgs
Alejandro Martínez Abraín error question Oct 29, 2012
Ben Bolker error question Oct 29, 2012
Seth Bigelow error question Oct 29, 2012
weighting observations in a glmmadmb model?
2 msgs
Giancarlo Sadoti weighting observations in a glmmadmb model? Oct 28, 2012
Ben Bolker weighting observations in a glmmadmb model? Oct 29, 2012
Plot lmer model with Effects package
1 msg
Marte Lilleeng Plot lmer model with Effects package Oct 26, 2012
model averaging
5 msgs
Joana Martelo model averaging Oct 25, 2012
Alan Haynes model averaging Oct 25, 2012
Joana Martelo model averaging Oct 25, 2012
Alan Haynes model averaging Oct 25, 2012
Joana Martelo model averaging Oct 25, 2012
R-sig-mixed-models Digest, Vol 70, Issue 33
1 msg
Andrew Digby R-sig-mixed-models Digest, Vol 70, Issue 33 Oct 24, 2012
Simulate samples from glmmPQL
2 msgs
Andrew Digby Simulate samples from glmmPQL Oct 23, 2012
Ben Bolker Simulate samples from glmmPQL Oct 23, 2012
Maximizer failed
2 msgs
Ammara Mahmood Maximizer failed Oct 23, 2012
Ben Bolker Maximizer failed Oct 23, 2012
Mixed model and negative binomial distribution
3 msgs
Seth Bigelow Mixed model and negative binomial distribution Oct 20, 2012
David Atkins Mixed model and negative binomial distribution Oct 22, 2012
Seth Bigelow Mixed model and negative binomial distribution Oct 23, 2012
Mixed model and negative binomial distribution
1 msg
Seth Bigelow Mixed model and negative binomial distribution Oct 22, 2012
glmer with dissimilarity values
1 msg
Douglas Bates glmer with dissimilarity values Oct 22, 2012
nlme, biexponential PK model simulation
1 msg
Afshartous, David nlme, biexponential PK model simulation Oct 20, 2012
modeling with hierarchical data
1 msg
George Wang modeling with hierarchical data Oct 18, 2012
model selection with ordered probit of three categories
1 msg
Agus Camacho model selection with ordered probit of three categories Oct 18, 2012
How to assess significance of variance components (Please discard previous e mail... but read this one)
2 msgs
Stephane Chantepie How to assess significance of variance components (Please discard previous e mail... but read this one) Oct 18, 2012
Greg Snow How to assess significance of variance components (Please discard previous e mail... but read this one) Oct 18, 2012
How to estimate assess significance of variance components
1 msg
Stephane Chantepie How to estimate assess significance of variance components Oct 18, 2012
error in lmer: length(f1) == length(f2) is not TRUE
6 msgs
Joana Martelo error in lmer: length(f1) == length(f2) is not TRUE Oct 16, 2012
Joehanes, Roby (NIH/NHLBI) [F] error in lmer: length(f1) == length(f2) is not TRUE Oct 16, 2012
Ben Bolker error in lmer: length(f1) == length(f2) is not TRUE Oct 16, 2012
Joana Martelo error in lmer: length(f1) == length(f2) is not TRUE Oct 17, 2012
Ben Bolker error in lmer: length(f1) == length(f2) is not TRUE Oct 17, 2012
Joana Martelo error in lmer: length(f1) == length(f2) is not TRUE Oct 17, 2012
lmer and truncated gaussian distributions
2 msgs
Dan McCloy lmer and truncated gaussian distributions Oct 15, 2012
Ben Bolker lmer and truncated gaussian distributions Oct 17, 2012
MCMCglmm: correctly estimating phylogenetic heritability
2 msgs
Jarrod Hadfield MCMCglmm: correctly estimating phylogenetic heritability Oct 3, 2012
Stott, Iain MCMCglmm: correctly estimating phylogenetic heritability Oct 17, 2012
degrees of freedom for a mixed effect model
1 msg
Saang-Yoon Hyun degrees of freedom for a mixed effect model Oct 16, 2012
lmer convergence parameters
1 msg
Boris Hejblum lmer convergence parameters Oct 16, 2012
extracting fixed effect from lme4 objects (coefplot2 not available)
2 msgs
Hans Ekbrand extracting fixed effect from lme4 objects (coefplot2 not available) Oct 16, 2012
Ben Bolker extracting fixed effect from lme4 objects (coefplot2 not available) Oct 16, 2012
GLMM with mgcv::gam
1 msg
Gavin Simpson GLMM with mgcv::gam Oct 16, 2012
Independence of residuals in a computer-based experiment/simulation analysed using a LME?
1 msg
Gavin Simpson Independence of residuals in a computer-based experiment/simulation analysed using a LME? Oct 16, 2012
Question about truncated poisson vs. normal poisson, "minus one" & Co. in winbugs or glmer
2 msgs
Highland Statistics Ltd Question about truncated poisson vs. normal poisson, "minus one" & Co. in winbugs or glmer Oct 16, 2012
David Atkins Question about truncated poisson vs. normal poisson, "minus one" & Co. in winbugs or glmer Oct 16, 2012
Question about truncated poisson vs. normal poisson "minus one" & Co. in winbugs or glmer
1 msg
Ulf Köther Question about truncated poisson vs. normal poisson "minus one" & Co. in winbugs or glmer Oct 16, 2012
help interpreting variance estimate in nlmer
1 msg
Robert help interpreting variance estimate in nlmer Oct 15, 2012
Question about truncated poisson vs. normal poisson "minus one" & Co. in winbugs or glmer
1 msg
Koether, Ulf Question about truncated poisson vs. normal poisson "minus one" & Co. in winbugs or glmer Oct 15, 2012
[Fwd: Errors in lme]
2 msgs
"Gerhard Göldner" [Fwd: Errors in lme] Oct 15, 2012
Ben Bolker [Fwd: Errors in lme] Oct 15, 2012
Which residuals to use for GEEs?
1 msg
Andrew Digby Which residuals to use for GEEs? Oct 14, 2012
R-sig-mixed-models Digest, Vol 70, Issue 19
1 msg
Antoine Tremblay R-sig-mixed-models Digest, Vol 70, Issue 19 Oct 14, 2012
R-sig-mixed-models Digest, Vol 70, Issue 19
1 msg
Antoine Tremblay R-sig-mixed-models Digest, Vol 70, Issue 19 Oct 14, 2012
R-sig-mixed-models Digest, Vol 70, Issue 19
1 msg
Antoine Tremblay R-sig-mixed-models Digest, Vol 70, Issue 19 Oct 14, 2012
R-sig-mixed-models Digest, Vol 70, Issue 19
1 msg
Antoine Tremblay R-sig-mixed-models Digest, Vol 70, Issue 19 Oct 14, 2012
modeling with hierarchical data
2 msgs
Matthew Medeiros modeling with hierarchical data Oct 11, 2012
George Wang modeling with hierarchical data Oct 12, 2012
random as fixed effect
3 msgs
Ben Bolker random as fixed effect Oct 11, 2012
John Maindonald random as fixed effect Oct 11, 2012
Andrew Robinson random as fixed effect Oct 11, 2012
'Missing' tests for lmer models
5 msgs
Luke Duncan 'Missing' tests for lmer models Oct 9, 2012
David Duffy 'Missing' tests for lmer models Oct 9, 2012
John Fox 'Missing' tests for lmer models Oct 9, 2012
Henric Nilsson (Public) 'Missing' tests for lmer models Oct 11, 2012
John Fox 'Missing' tests for lmer models Oct 11, 2012
specification of conditional random effects in lme
1 msg
Jörg Albrecht specification of conditional random effects in lme Oct 11, 2012
random effect
1 msg
Joana Martelo random effect Oct 11, 2012
ZIP MCMCglmm
1 msg
Katrin Ronnenberg ZIP MCMCglmm Oct 11, 2012
random as fixed effect
2 msgs
Joana Martelo random as fixed effect Oct 11, 2012
Ben Bolker random as fixed effect Oct 11, 2012
Combining MCMCglmm estimates
6 msgs
Davina Hill Combining MCMCglmm estimates Oct 2, 2012
Paul Johnson Combining MCMCglmm estimates Oct 8, 2012
Hans Ekbrand Combining MCMCglmm estimates Oct 10, 2012
Paul Johnson Combining MCMCglmm estimates Oct 10, 2012
Hans Ekbrand Combining MCMCglmm estimates Oct 11, 2012
Joshua Wiley Combining MCMCglmm estimates Oct 11, 2012
examples of combining chains from MCMCglmm
3 msgs
Jarrod Hadfield examples of combining chains from MCMCglmm Oct 3, 2012
Joshua Wiley examples of combining chains from MCMCglmm Oct 3, 2012
Hans Ekbrand examples of combining chains from MCMCglmm Oct 10, 2012
problem with a mixed linear model interpretation
1 msg
servant mathieu problem with a mixed linear model interpretation Oct 9, 2012
ASReml - heritability errors
4 msgs
Szymek Drobniak ASReml - heritability errors Oct 9, 2012
iwhite@staffmail.ed.ac.uk ASReml - heritability errors Oct 9, 2012
Jarrod Hadfield ASReml - heritability errors Oct 9, 2012
Szymek Drobniak ASReml - heritability errors Oct 9, 2012
robust linear mixed model
4 msgs
Ahmad Rabiee robust linear mixed model Oct 8, 2012
Geraci, Marco robust linear mixed model Oct 9, 2012
Ben Bolker robust linear mixed model Oct 9, 2012
Manuel Koller robust linear mixed model Oct 9, 2012
lme() and SAS proc mixed
1 msg
Ben Bolker lme() and SAS proc mixed Oct 9, 2012
Linear Mixed Effects vs. Repeated Measures
3 msgs
Cortin A. Zelaznog Linear Mixed Effects vs. Repeated Measures Oct 7, 2012
Michael Lawrence Linear Mixed Effects vs. Repeated Measures Oct 8, 2012
iwhite@staffmail.ed.ac.uk Linear Mixed Effects vs. Repeated Measures Oct 9, 2012
random effect
2 msgs
Joana Martelo random effect Oct 7, 2012
Joerg Luedicke random effect Oct 8, 2012
visualizing effects of fixed factors and partial/whole model statistics
2 msgs
Timothy Farkas visualizing effects of fixed factors and partial/whole model statistics Oct 7, 2012
John Fox visualizing effects of fixed factors and partial/whole model statistics Oct 7, 2012
ZIP MCMCglmm
5 msgs
Katrin Ronnenberg ZIP MCMCglmm Oct 5, 2012
Jarrod Hadfield ZIP MCMCglmm Oct 6, 2012
Robert Long Parameter-expanded priors with MCMCglmm Oct 7, 2012
Jarrod Hadfield Parameter-expanded priors with MCMCglmm Oct 7, 2012
Robert Long Parameter-expanded priors with MCMCglmm Oct 7, 2012
MCMCglmm Starting Value structure
3 msgs
Robin Jeffries MCMCglmm Starting Value structure Oct 5, 2012
Jarrod Hadfield MCMCglmm Starting Value structure Oct 6, 2012
Robin Jeffries MCMCglmm Starting Value structure Oct 6, 2012
all pair comparisons in proportion analysis
2 msgs
Atsuko Sato all pair comparisons in proportion analysis Oct 5, 2012
David Duffy all pair comparisons in proportion analysis Oct 5, 2012
Mixed model and negative binomial distribution
2 msgs
Highland Statistics Ltd Mixed model and negative binomial distribution Oct 5, 2012
Seth Bigelow Mixed model and negative binomial distribution Oct 5, 2012
Random Effects on Linear Mixed Models
1 msg
David Llanos Random Effects on Linear Mixed Models Oct 5, 2012
Mixed model and negative binomial distribution
4 msgs
Seth Bigelow Mixed model and negative binomial distribution Oct 3, 2012
David Atkins Mixed model and negative binomial distribution Oct 3, 2012
Ben Bolker Mixed model and negative binomial distribution Oct 4, 2012
Seth Bigelow Mixed model and negative binomial distribution Oct 5, 2012
Origins of difference in significance between lmer/pvals.fnc and aov?
1 msg
S Ellison Origins of difference in significance between lmer/pvals.fnc and aov? Oct 5, 2012
lmer multivariate longitudinal model
6 msgs
basile pinsard lmer multivariate longitudinal model Oct 3, 2012
basile pinsard lmer multivariate longitudinal model Oct 3, 2012
Joerg Luedicke lmer multivariate longitudinal model Oct 4, 2012
basile pinsard lmer multivariate longitudinal model Oct 4, 2012
Joerg Luedicke lmer multivariate longitudinal model Oct 4, 2012
basile pinsard lmer multivariate longitudinal model Oct 5, 2012
Mixed Effects Model with ordered dependent variable and random slopes
2 msgs
Eiko Fried Mixed Effects Model with ordered dependent variable and random slopes Oct 4, 2012
Rune Haubo Mixed Effects Model with ordered dependent variable and random slopes Oct 4, 2012
Difficulties in trying to do a mixed effects model using the lmer function
2 msgs
Riedel Judith Difficulties in trying to do a mixed effects model using the lmer function Oct 4, 2012
Alan Haynes Difficulties in trying to do a mixed effects model using the lmer function Oct 4, 2012
Cochran's Q and I-squared for random-effects meta-analysis of proportions with lmer
1 msg
Elias, S.G. Cochran's Q and I-squared for random-effects meta-analysis of proportions with lmer Oct 4, 2012
Sampling methods for MCMCglmm using cengaussian family
1 msg
Jarrod Hadfield Sampling methods for MCMCglmm using cengaussian family Oct 3, 2012
Multivariate mixed models
2 msgs
Jarrod Hadfield Multivariate mixed models Oct 3, 2012
David Atkins Multivariate mixed models Oct 3, 2012
nlme: spatial autocorrelation on a sphere
1 msg
Malcolm Fairbrother nlme: spatial autocorrelation on a sphere Oct 3, 2012
nlme: spatial autocorrelation on a sphere
2 msgs
Dan Bebber nlme: spatial autocorrelation on a sphere Oct 1, 2012
Ben Bolker nlme: spatial autocorrelation on a sphere Oct 2, 2012
user-defined covariance matrix for linear mixed models
5 msgs
philippe fullsack user-defined covariance matrix for linear mixed models Oct 1, 2012
Vincent Careau user-defined covariance matrix for linear mixed models Oct 1, 2012
philippe fullsack user-defined covariance matrix for linear mixed models Oct 1, 2012
David Duffy user-defined covariance matrix for linear mixedmodels Oct 1, 2012
philippe fullsack user-defined covariance matrix for linear mixedmodels Oct 1, 2012
fixed or random effects?
4 msgs
Joana Martelo fixed or random effects? Oct 1, 2012
Douglas Bates fixed or random effects? Oct 1, 2012
Ben Bolker fixed or random effects? Oct 1, 2012
Ben Bolker fixed or random effects? Oct 1, 2012
Two Questions re: Piecewise mixed effects models
1 msg
Joshua Wiley Two Questions re: Piecewise mixed effects models Oct 1, 2012
Subject-wise log-likelihood gradient and hessian
1 msg
Rubem Kaipper Ceratti Subject-wise log-likelihood gradient and hessian Oct 1, 2012