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R-SIG-mixed-models September 2013

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glmmADMB
1 msg
Gustavo Romero glmmADMB Sep 30, 2013
GLMM doesn't do what it is supposed to (wrong results).
3 msgs
Van De Walle, Joanie GLMM doesn't do what it is supposed to (wrong results). Sep 30, 2013
Jake Westfall GLMM doesn't do what it is supposed to (wrong results). Sep 30, 2013
Ben Bolker GLMM doesn't do what it is supposed to (wrong results). Sep 30, 2013
Maximum nAGQ=25?
1 msg
R-sig-mixed-models Digest, Vol 81, Issue 50
2 msgs
xavier chevillot R-sig-mixed-models Digest, Vol 81, Issue 50 Sep 30, 2013
ONKELINX, Thierry R-sig-mixed-models Digest, Vol 81, Issue 50 Sep 30, 2013
function for simulating from GLMM
2 msgs
Paul Johnson function for simulating from GLMM Sep 12, 2013
Paul Johnson function for simulating from GLMM Sep 30, 2013
Maximum nAGQ=25?
1 msg
Rafael Sauter Maximum nAGQ=25? Sep 30, 2013
glmmadmb help
1 msg
Ben Bolker glmmadmb help Sep 29, 2013
Maximum nAGQ=25?
5 msgs
Rafael Sauter Maximum nAGQ=25? Sep 26, 2013
Ben Bolker Maximum nAGQ=25? Sep 26, 2013
Ross Boylan Maximum nAGQ=25? Sep 26, 2013
Ben Bolker Maximum nAGQ=25? Sep 26, 2013
Ben Bolker Maximum nAGQ=25? Sep 29, 2013
glmmadmb help
1 msg
Younes Mouatassim glmmadmb help Sep 29, 2013
R-sig-mixed-models Digest, Vol 81, Issue 51
1 msg
Rafael Sauter R-sig-mixed-models Digest, Vol 81, Issue 51 Sep 27, 2013
overdispersion
2 msgs
Caro Recalde Ruiz overdispersion Sep 26, 2013
Ben Bolker overdispersion Sep 26, 2013
Announcement: afex 0.6-82 now on CRAN
1 msg
Henrik Singmann Announcement: afex 0.6-82 now on CRAN Sep 26, 2013
help in GlmmPQL
2 msgs
xavier chevillot help in GlmmPQL Sep 26, 2013
Ben Bolker help in GlmmPQL Sep 26, 2013
Repeated measures within and across years
2 msgs
Kristen Dybala Repeated measures within and across years Sep 23, 2013
Henrik Singmann Repeated measures within and across years Sep 26, 2013
Passing lme4 optimizer arguments to pbmodcomp and afex/mixed
9 msgs
Tom Wenseleers Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Ben Bolker Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Henrik Singmann Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Tom Wenseleers Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Tobias Heed Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Henrik Singmann Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Søren Højsgaard Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Tom Wenseleers Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
Søren Højsgaard Passing lme4 optimizer arguments to pbmodcomp and afex/mixed Sep 25, 2013
monitoring convergence in gamm4 (with the new lmer-1.0-4 modular functionality)
1 msg
Steve Walker monitoring convergence in gamm4 (with the new lmer-1.0-4 modular functionality) Sep 25, 2013
monitoring convergence in gamm4 (with the new lmer-1.0-4 modular functionality)
2 msgs
damian.collins at dpi.nsw.gov.au monitoring convergence in gamm4 (with the new lmer-1.0-4 modular functionality) Sep 25, 2013
Steve Walker monitoring convergence in gamm4 (with the new lmer-1.0-4 modular functionality) Sep 25, 2013
Nested Random Effects Model using lme4/lmer
1 msg
Gustaf Granath Nested Random Effects Model using lme4/lmer Sep 25, 2013
about Glmm
1 msg
xavier chevillot about Glmm Sep 25, 2013
lme4 1.0-4 now on CRAN
12 msgs
Hufthammer, Karl Ove lme4 1.0-4 now on CRAN Sep 22, 2013
Martin Maechler lme4 1.0-4 now on CRAN Sep 23, 2013
Ben Bolker lme4 1.0-4 now on CRAN Sep 23, 2013
Joshua Wiley lme4 1.0-4 now on CRAN Sep 23, 2013
Ben Bolker lme4 1.0-4 now on CRAN Sep 23, 2013
Joshua Wiley lme4 1.0-4 now on CRAN Sep 23, 2013
Henrik Singmann lme4 1.0-4 now on CRAN Sep 24, 2013
Douglas Bates lme4 1.0-4 now on CRAN Sep 24, 2013
Hadley Wickham lme4 1.0-4 now on CRAN Sep 24, 2013
Henrik Singmann lme4 1.0-4 now on CRAN Sep 24, 2013
Joshua Wiley lme4 1.0-4 now on CRAN Sep 24, 2013
Douglas Bates lme4 1.0-4 now on CRAN Sep 24, 2013
why would using p-values of GLMM for distr other than Gaussian be correct?
5 msgs
Pablo Inchausti why would using p-values of GLMM for distr other than Gaussian be correct? Sep 23, 2013
Joshua Wiley why would using p-values of GLMM for distr other than Gaussian be correct? Sep 23, 2013
Pablo Inchausti why would using p-values of GLMM for distr other than Gaussian be correct? Sep 24, 2013
Ben Bolker why would using p-values of GLMM for distr other than Gaussian be correct? Sep 24, 2013
Joshua Wiley why would using p-values of GLMM for distr other than Gaussian be correct? Sep 24, 2013
R-sig-mixed-models Digest, Vol 81, Issue 40
2 msgs
Johannes Radinger R-sig-mixed-models Digest, Vol 81, Issue 40 Sep 24, 2013
Ben Bolker R-sig-mixed-models Digest, Vol 81, Issue 40 Sep 24, 2013
GAM & GAMM course
1 msg
Highland Statistics Ltd GAM & GAMM course Sep 24, 2013
pwrssUpdate Error with new version of lme4
1 msg
Johannes Radinger pwrssUpdate Error with new version of lme4 Sep 24, 2013
pwrssUpdate Error with new version of lme4
2 msgs
Johannes Radinger pwrssUpdate Error with new version of lme4 Sep 23, 2013
Steve Walker pwrssUpdate Error with new version of lme4 Sep 23, 2013
Variance structure in mixed models
1 msg
v_coudrain at voila.fr Variance structure in mixed models Sep 23, 2013
R-sig-mixed-models Digest, Vol 81, Issue 38
1 msg
Johannes Radinger R-sig-mixed-models Digest, Vol 81, Issue 38 Sep 23, 2013
pwrssUpdate Error with new version of lme4
3 msgs
Johannes Radinger pwrssUpdate Error with new version of lme4 Sep 23, 2013
Steve Walker pwrssUpdate Error with new version of lme4 Sep 23, 2013
Ben Bolker pwrssUpdate Error with new version of lme4 Sep 23, 2013
Variance structure in mixed models
2 msgs
v_coudrain at voila.fr Variance structure in mixed models Sep 23, 2013
Ben Bolker Variance structure in mixed models Sep 23, 2013
lme4 1.0-4 now on CRAN
2 msgs
Hufthammer, Karl Ove lme4 1.0-4 now on CRAN Sep 23, 2013
Steve Walker lme4 1.0-4 now on CRAN Sep 23, 2013
Schoenfield residual test for discrete time hazard model
1 msg
Alexander Neustädter Schoenfield residual test for discrete time hazard model Sep 23, 2013
lme4 1.0-4 now on CRAN
2 msgs
Ben Bolker lme4 1.0-4 now on CRAN Sep 21, 2013
Kevin Wright lme4 1.0-4 now on CRAN Sep 21, 2013
Random effects interactions in lmer
1 msg
Stuart Luppescu Random effects interactions in lmer Sep 20, 2013
Residual variance term in lmer with binomial error and observation-level random effect
1 msg
Tina Wey Residual variance term in lmer with binomial error and observation-level random effect Sep 20, 2013
Question about what is "shrinkage"...
6 msgs
Emmanuel Curis Question about what is "shrinkage"... Sep 18, 2013
Daniel Wright Question about what is "shrinkage"... Sep 18, 2013
Douglas Bates Question about what is "shrinkage"... Sep 18, 2013
iwhite@staffmail.ed.ac.uk Question about what is "shrinkage"... Sep 19, 2013
Emmanuel Curis Question about what is "shrinkage"... Sep 19, 2013
Daniel Wright Question about what is "shrinkage"... Sep 20, 2013
Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version
4 msgs
Marko Bachl Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version Sep 19, 2013
Kevin Wright Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version Sep 19, 2013
Ben Bolker Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version Sep 19, 2013
Marko Bachl Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version Sep 20, 2013
Nested Random Effects Model using lme4/lmer
1 msg
Martin Turcotte Nested Random Effects Model using lme4/lmer Sep 19, 2013
Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version
1 msg
Marko Bachl Implausible estimate of random effects variance in lmer (lme4 devel version), sensible estimate in CRAN version Sep 19, 2013
Presenting results of a mixed model containing factors
9 msgs
Sarah Dryhurst Presenting results of a mixed model containing factors Sep 6, 2013
Ben Bolker Presenting results of a mixed model containing factors Sep 8, 2013
Sarah Dryhurst Presenting results of a mixed model containing factors Sep 9, 2013
Ben Bolker Presenting results of a mixed model containing factors Sep 9, 2013
Sarah Dryhurst Presenting results of a mixed model containing factors Sep 18, 2013
Henrik Singmann Presenting results of a mixed model containing factors Sep 18, 2013
Sarah Dryhurst Presenting results of a mixed model containing factors Sep 18, 2013
Henrik Singmann Presenting results of a mixed model containing factors Sep 18, 2013
Sarah Dryhurst Presenting results of a mixed model containing factors Sep 19, 2013
Question on calculating the conflidence limits on the intraclass correlation in a nested binomial mixed model
4 msgs
Tom Wenseleers Question on calculating the conflidence limits on the intraclass correlation in a nested binomial mixed model Sep 16, 2013
ONKELINX, Thierry Question on calculating the conflidence limits on the intraclass correlation in a nested binomial mixed model Sep 17, 2013
Tom Wenseleers Question on calculating the conflidence limits on the intraclass correlation in a nested binomial mixed model Sep 17, 2013
Tom Wenseleers Question on calculating the conflidence limits on the intraclass correlation in a nested binomial mixed model Sep 19, 2013
Obtaining fixed effect beta estimates for effects with 3+ levels
2 msgs
Nicole Michel Obtaining fixed effect beta estimates for effects with 3+ levels Sep 18, 2013
Ista Zahn Obtaining fixed effect beta estimates for effects with 3+ levels Sep 18, 2013
EOI for R work using a mixed models approach [SEC=UNCLASSIFIED]
1 msg
Gosse, Michelle EOI for R work using a mixed models approach [SEC=UNCLASSIFIED] Sep 18, 2013
Sum of squares discrepancy in lmer
3 msgs
Lenth, Russell V Sum of squares discrepancy in lmer Sep 18, 2013
Douglas Bates Sum of squares discrepancy in lmer Sep 18, 2013
Lenth, Russell V Sum of squares discrepancy in lmer Sep 18, 2013
Model selection with lme4
3 msgs
Sarah Dryhurst Model selection with lme4 Sep 18, 2013
Ben Bolker Model selection with lme4 Sep 18, 2013
Sarah Dryhurst Model selection with lme4 Sep 18, 2013
generating contrasts from glmm.admb?
1 msg
Maureen Durkin generating contrasts from glmm.admb? Sep 18, 2013
glmer optimization questions
6 msgs
Tobias Heed glmer optimization questions Sep 17, 2013
Ben Bolker glmer optimization questions Sep 17, 2013
Tobias Heed glmer optimization questions Sep 17, 2013
Ben Bolker glmer optimization questions Sep 17, 2013
Tobias Heed glmer optimization questions Sep 18, 2013
Ben Bolker glmer optimization questions Sep 18, 2013
cross posting an EOI from ANZSTAT [SEC=UNCLASSIFIED]
1 msg
Gosse, Michelle cross posting an EOI from ANZSTAT [SEC=UNCLASSIFIED] Sep 17, 2013
generating contrasts from glmm.admb?
3 msgs
Maureen Durkin generating contrasts from glmm.admb? Sep 17, 2013
Maureen Durkin generating contrasts from glmm.admb? Sep 17, 2013
Ben Bolker generating contrasts from glmm.admb? Sep 17, 2013
Lack of Variation in Slopes
2 msgs
Ben Bolker Lack of Variation in Slopes Sep 17, 2013
Jake Westfall Lack of Variation in Slopes Sep 17, 2013
Lack of Variation in Slopes
4 msgs
AvianResearchDivision Lack of Variation in Slopes Sep 16, 2013
Ben Bolker Lack of Variation in Slopes Sep 16, 2013
AvianResearchDivision Lack of Variation in Slopes Sep 17, 2013
Ben Bolker Lack of Variation in Slopes Sep 17, 2013
gls for generalized linear model (ChenChun)
2 msgs
ChenChun gls for generalized linear model (ChenChun) Sep 17, 2013
Ben Bolker gls for generalized linear model (ChenChun) Sep 17, 2013
gls for generalized linear model (ChenChun)
2 msgs
ChenChun gls for generalized linear model (ChenChun) Sep 17, 2013
Ben Bolker gls for generalized linear model (ChenChun) Sep 17, 2013
gls for generalized linear model
1 msg
Hufthammer, Karl Ove gls for generalized linear model Sep 17, 2013
gls for generalized linear model
5 msgs
ChenChun gls for generalized linear model Sep 16, 2013
Julia Sommerfeld gls for generalized linear model Sep 16, 2013
ChenChun gls for generalized linear model Sep 16, 2013
Ben Bolker gls for generalized linear model Sep 16, 2013
ONKELINX, Thierry gls for generalized linear model Sep 17, 2013
lme4.0
6 msgs
Viechtbauer Wolfgang (STAT) lme4.0 Sep 15, 2013
Ben Bolker lme4.0 Sep 15, 2013
Andrzej Galecki lme4.0 Sep 15, 2013
Ben Bolker lme4.0 Sep 15, 2013
Viechtbauer Wolfgang (STAT) lme4.0 Sep 15, 2013
Ben Bolker lme4.0 Sep 15, 2013
General Questions Regarding lmer Output
6 msgs
AvianResearchDivision General Questions Regarding lmer Output Sep 13, 2013
Doran, Harold General Questions Regarding lmer Output Sep 13, 2013
AvianResearchDivision General Questions Regarding lmer Output Sep 13, 2013
Henrik Singmann General Questions Regarding lmer Output Sep 13, 2013
Ben Bolker General Questions Regarding lmer Output Sep 14, 2013
AvianResearchDivision General Questions Regarding lmer Output Sep 14, 2013
Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel)
2 msgs
Justice Moses K. Aheto Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel) Sep 14, 2013
Pantelis Z. Hadjipantelis Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel) Sep 14, 2013
Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel)
2 msgs
Justice Moses K. Aheto Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel) Sep 12, 2013
Pantelis Z. Hadjipantelis Modelling Multiple response in multivariate regression with extension to mixed effects models (multilevel) Sep 13, 2013
Non-Parametric with Lme4
1 msg
Ackley Lane Non-Parametric with Lme4 Sep 13, 2013
How to extract variance components in lme4 1.0 ?
3 msgs
Kevin Wright How to extract variance components in lme4 1.0 ? Sep 12, 2013
Ben Bolker How to extract variance components in lme4 1.0 ? Sep 12, 2013
Ben Bolker How to extract variance components in lme4 1.0 ? Sep 12, 2013
Standard errors for predictions of logistic GLMM
2 msgs
Ben Bolker Standard errors for predictions of logistic GLMM Sep 12, 2013
Benjamin Chabot-Hanowell Standard errors for predictions of logistic GLMM Sep 12, 2013
Obtaining the variance-covariance matrix for mixed-model averaged parameters
2 msgs
Paul Mensink Obtaining the variance-covariance matrix for mixed-model averaged parameters Sep 11, 2013
Ben Bolker Obtaining the variance-covariance matrix for mixed-model averaged parameters Sep 12, 2013
lmer: no warning messages in dev version
2 msgs
Gustaf Granath lmer: no warning messages in dev version Sep 11, 2013
Ben Bolker lmer: no warning messages in dev version Sep 12, 2013
glmm (binomial, logit) with transformed/scaled predictors
1 msg
Johannes Radinger glmm (binomial, logit) with transformed/scaled predictors Sep 12, 2013
LMER All factor level interactions & Std Dev
1 msg
Emma Ajay LMER All factor level interactions & Std Dev Sep 11, 2013
lmer and classical Expected Mean Squares
2 msgs
Lenth, Russell V lmer and classical Expected Mean Squares Sep 11, 2013
Steven McKinney lmer and classical Expected Mean Squares Sep 11, 2013
random coefficient model with time: how to interpret when time is not a fixed effect?
1 msg
Meredith, Christy S -FS random coefficient model with time: how to interpret when time is not a fixed effect? Sep 11, 2013
glmm (binomial, logit) with transformed/scaled predictors
2 msgs
Johannes Radinger glmm (binomial, logit) with transformed/scaled predictors Sep 11, 2013
Ben Bolker glmm (binomial, logit) with transformed/scaled predictors Sep 11, 2013
lmer and classical Expected Mean Squares
2 msgs
Patrick Ward lmer and classical Expected Mean Squares Sep 10, 2013
Michael Kubovy lmer and classical Expected Mean Squares Sep 11, 2013
Interpreting results of a mixed model
2 msgs
Elizabeth Beck Interpreting results of a mixed model Sep 10, 2013
Ben Bolker Interpreting results of a mixed model Sep 10, 2013
GLM question about chi-square and LLH
2 msgs
Torvon GLM question about chi-square and LLH Sep 10, 2013
Ben Bolker GLM question about chi-square and LLH Sep 10, 2013
MCMCglmm with exponential family
2 msgs
Iain Stott MCMCglmm with exponential family Sep 9, 2013
Joshua Wiley MCMCglmm with exponential family Sep 9, 2013
lme4 dev github version
3 msgs
Gustaf Granath lme4 dev github version Sep 6, 2013
Ben Bolker lme4 dev github version Sep 6, 2013
Ben Bolker lme4 dev github version Sep 8, 2013
lmer (lme4) predictions and confidence interval, help with existing code
2 msgs
Ron Stone lmer (lme4) predictions and confidence interval, help with existing code Sep 1, 2013
Ben Bolker lmer (lme4) predictions and confidence interval, help with existing code Sep 8, 2013
MCMCglmm with exponential family
2 msgs
Iain Stott MCMCglmm with exponential family Sep 5, 2013
Ben Bolker MCMCglmm with exponential family Sep 7, 2013
using correlation compound structure: how to incorporate multiple random effects?
1 msg
Meredith, Christy S -FS using correlation compound structure: how to incorporate multiple random effects? Sep 6, 2013
(G)LMM for radian/phase data
7 msgs
Tobias Heed (G)LMM for radian/phase data Sep 5, 2013
Titus von der Malsburg (G)LMM for radian/phase data Sep 5, 2013
iwhite@staffmail.ed.ac.uk (G)LMM for radian/phase data Sep 5, 2013
Tobias Heed (G)LMM for radian/phase data Sep 5, 2013
Mitchell Maltenfort (G)LMM for radian/phase data Sep 5, 2013
Miloš Žarković (G)LMM for radian/phase data Sep 5, 2013
Peter Dixon (G)LMM for radian/phase data Sep 5, 2013
lme4 dev github version
2 msgs
Gustaf Granath lme4 dev github version Sep 5, 2013
Ben Bolker lme4 dev github version Sep 5, 2013
lmer: parametric bootstrap versus mcmcsamp
1 msg
Gustaf Granath lmer: parametric bootstrap versus mcmcsamp Sep 4, 2013
lmer: parametric bootstrap versus mcmcsamp
2 msgs
Gustaf Granath lmer: parametric bootstrap versus mcmcsamp Sep 4, 2013
Ben Bolker lmer: parametric bootstrap versus mcmcsamp Sep 4, 2013
Do “true” multi-level models require Bayesian methods?
4 msgs
Michael Wojnowicz Do “true” multi-level models require Bayesian methods? Sep 3, 2013
Jake Westfall Do “true” multi-level models require Bayesian methods? Sep 3, 2013
Steven J. Pierce Do "true" multi-level models require Bayesian methods? Sep 4, 2013
David Duffy Do “true” multi-level models require Bayesian methods? Sep 4, 2013
Do ?true? multi-level models require Bayesian methods?
1 msg
Corey Sparks Do ?true? multi-level models require Bayesian methods? Sep 4, 2013
lmer: parametric bootstrap versus mcmcsamp
1 msg
Gustaf Granath lmer: parametric bootstrap versus mcmcsamp Sep 3, 2013
PS
1 msg
Michael Wojnowicz PS Sep 3, 2013
(in plain text) Replication in nested structure, how much?
2 msgs
Stephen T (in plain text) Replication in nested structure, how much? Sep 3, 2013
Ben Bolker (in plain text) Replication in nested structure, how much? Sep 3, 2013
Test of random effect
2 msgs
Torvon Test of random effect Sep 3, 2013
Philippi, Tom Test of random effect Sep 3, 2013
Replication in nested mixed model structure, how much?
1 msg
Stephen T Replication in nested mixed model structure, how much? Sep 3, 2013
R: RE: Overdispersion and model selection: glmmadmb vs. glmer
6 msgs
Paul Johnson R: RE: Overdispersion and model selection: glmmadmb vs. glmer Sep 1, 2013
Luca Corlatti R: Re: R: RE: Overdispersion and model selection: glmmadmb vs. glmer Sep 2, 2013
Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Sep 2, 2013
Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Sep 2, 2013
Paul Johnson Overdispersion and model selection: glmmadmb vs. glmer Sep 2, 2013
Luca Corlatti R: Re: Overdispersion and model selection: glmmadmb vs. glmer Sep 2, 2013