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R-SIG-mixed-models October 2013

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contrasts and interactions with multi-level factors in glmer
1 msg
Haldre Rogers contrasts and interactions with multi-level factors in glmer Oct 31, 2013
wrong post
1 msg
Tobias Heed wrong post Oct 31, 2013
r-sig-models@r-project.org
1 msg
Tobias Heed r-sig-models@r-project.org Oct 31, 2013
How to compute a correlation between two time ranges?
2 msgs
Yla Savh How to compute a correlation between two time ranges? Oct 31, 2013
Ben Bolker How to compute a correlation between two time ranges? Oct 31, 2013
behavior of na.action = na.exclude using lmer in lme4 1.0-5 inconsistent with lm and with older versions of lme4
2 msgs
David Kane behavior of na.action = na.exclude using lmer in lme4 1.0-5 inconsistent with lm and with older versions of lme4 Oct 29, 2013
Ben Bolker behavior of na.action = na.exclude using lmer in lme4 1.0-5 inconsistent with lm and with older versions of lme4 Oct 30, 2013
lme: predictions variance collapses when one more level is added
7 msgs
Dieter Menne lme: predictions variance collapses when one more level is added Oct 25, 2013
Ben Bolker lme: predictions variance collapses when one more level is added Oct 25, 2013
iwhite@staffmail.ed.ac.uk lme: predictions variance collapses when one more level is added Oct 26, 2013
Dieter Menne lme: predictions variance collapses when one more level is added Oct 27, 2013
Ben Bolker lme: predictions variance collapses when one more level is added Oct 27, 2013
Dieter Menne lme: predictions variance collapses when one more level is added Oct 27, 2013
Dieter Menne lme: predictions variance collapses when one more level is added Oct 29, 2013
What does "number of groups < 50"
7 msgs
Ben Bolker What does "number of groups < 50" Oct 22, 2013
Maria Paola Bissiri What does "number of groups < 50" Oct 24, 2013
Ben Bolker What does "number of groups < 50" Oct 24, 2013
Ben Pelzer warning glmer Oct 25, 2013
Steve Walker warning glmer Oct 25, 2013
Maria Paola Bissiri What does "number of groups < 50" Oct 28, 2013
Emmanuel Curis What does "number of groups < 50" Oct 29, 2013
Problems with lme random slope+intercept model
2 msgs
anord Problems with lme random slope+intercept model Oct 28, 2013
Ben Bolker Problems with lme random slope+intercept model Oct 28, 2013
confidence intervals on predictions from lme
1 msg
Elizabeth Graham confidence intervals on predictions from lme Oct 26, 2013
multilevel linear models
2 msgs
srecko joksimovic multilevel linear models Oct 22, 2013
marKo multilevel linear models Oct 25, 2013
GAMM4: In mer_finalize(ans) : false convergence (8)
2 msgs
saba GAMM4: In mer_finalize(ans) : false convergence (8) Oct 24, 2013
Ben Bolker GAMM4: In mer_finalize(ans) : false convergence (8) Oct 24, 2013
Zero-inflated binomial (ZIB) models in glmmADMB: warnings and errors
1 msg
Stefan Ferger Zero-inflated binomial (ZIB) models in glmmADMB: warnings and errors Oct 24, 2013
Course: Mixed modelling (with intro MCMC)
1 msg
Highland Statistics Ltd Course: Mixed modelling (with intro MCMC) Oct 24, 2013
lme4 and confidence intervals
1 msg
Ben Bolker lme4 and confidence intervals Oct 23, 2013
lme4 and confidence intervals
1 msg
Ben Bolker lme4 and confidence intervals Oct 23, 2013
lme4 and confidence intervals
1 msg
Ben Bolker lme4 and confidence intervals Oct 23, 2013
Zero-inflated binomial (ZIB) models in glmmADMB:, warnings and errors
1 msg
Highland Statistics Ltd Zero-inflated binomial (ZIB) models in glmmADMB:, warnings and errors Oct 23, 2013
Zero-inflated binomial (ZIB) models in glmmADMB: warnings and errors
1 msg
Stefan Ferger Zero-inflated binomial (ZIB) models in glmmADMB: warnings and errors Oct 23, 2013
Error structure for split-split plot with treatment across blocks
9 msgs
Elizabeth Graham Error structure for split-split plot with treatment across blocks Oct 21, 2013
Steve Denham Error structure for split-split plot with treatment across blocks Oct 21, 2013
S Ellison Error structure for split-split plot with treatment across blocks Oct 21, 2013
Elizabeth Graham Error structure for split-split plot with treatment across blocks Oct 21, 2013
chris.brien at iinet.net.au Error structure for split-split plot with treatment across blocks Oct 21, 2013
chris.brien at iinet.net.au Error structure for split-split plot with treatment across blocks Oct 21, 2013
S Ellison Error structure for split-split plot with treatment across blocks Oct 22, 2013
Elizabeth Graham Error structure for split-split plot with treatment across blocks Oct 22, 2013
Tobias Heed Error structure for split-split plot with treatment across blocks Oct 22, 2013
warning computing profile confidence intervals with confint()
2 msgs
Sol Lago warning computing profile confidence intervals with confint() Oct 22, 2013
Ben Bolker warning computing profile confidence intervals with confint() Oct 22, 2013
lme4 sanple size analysis / power analysis by simulation ...
5 msgs
Lenth, Russell V lme4 sanple size analysis / power analysis by simulation ... Oct 22, 2013
David Winsemius lme4 sanple size analysis / power analysis by simulation ... Oct 22, 2013
Kevin E. Thorpe lme4 sanple size analysis / power analysis by simulation ... Oct 22, 2013
Steven McKinney lme4 sanple size analysis / power analysis by simulation ... Oct 22, 2013
Lenth, Russell V lme4 sanple size analysis / power analysis by simulation ... Oct 22, 2013
confidence intervals from lmer() with random correlation parameters
2 msgs
Sol Lago confidence intervals from lmer() with random correlation parameters Oct 19, 2013
Steve Walker confidence intervals from lmer() with random correlation parameters Oct 22, 2013
warning computing profile confidence intervals with confint()
1 msg
Sol Lago warning computing profile confidence intervals with confint() Oct 22, 2013
MCMCglmm 3 way interaction
1 msg
john benson MCMCglmm 3 way interaction Oct 22, 2013
equality constraints in lmer/lme4
8 msgs
Jean-Philippe Laurenceau equality constraints in lmer/lme4 Oct 20, 2013
Ewart Thomas equality constraints in lmer/lme4 Oct 20, 2013
David Duffy equality constraints in lmer/lme4 Oct 20, 2013
Greg Snow equality constraints in lmer/lme4 Oct 21, 2013
David Winsemius equality constraints in lmer/lme4 Oct 21, 2013
Greg Snow equality constraints in lmer/lme4 Oct 21, 2013
David Winsemius equality constraints in lmer/lme4 Oct 21, 2013
Jean-Philippe Laurenceau equality constraints in lmer/lme4 Oct 21, 2013
lme4 sanple size analysis / power analysis by simulation and confidence intervals - A request to check the approach
1 msg
Daniel Fountain lme4 sanple size analysis / power analysis by simulation and confidence intervals - A request to check the approach Oct 21, 2013
pwrssUpdate Error with new version of lme4
2 msgs
Johannes Radinger pwrssUpdate Error with new version of lme4 Oct 18, 2013
Ben Bolker pwrssUpdate Error with new version of lme4 Oct 21, 2013
R-sig-mixed-models Digest, Vol 82, Issue 31
2 msgs
Iasonas Lamprianou R-sig-mixed-models Digest, Vol 82, Issue 31 Oct 21, 2013
Ben Bolker R-sig-mixed-models Digest, Vol 82, Issue 31 Oct 21, 2013
select glmm r function
1 msg
xavier chevillot select glmm r function Oct 21, 2013
MCMCglmm model and prior specification-incomplete sampling of blocks
1 msg
Peter Pearman MCMCglmm model and prior specification-incomplete sampling of blocks Oct 21, 2013
R-sig-mixed-models Digest, Vol 82, Issue 31
1 msg
Cole, Tim R-sig-mixed-models Digest, Vol 82, Issue 31 Oct 21, 2013
equality constraints in lmer/lme4
1 msg
Jean-Philippe Laurenceau equality constraints in lmer/lme4 Oct 20, 2013
Warning in rankMatrix(X)
3 msgs
Juan Kamienkowski Warning in rankMatrix(X) Oct 17, 2013
Ben Bolker Warning in rankMatrix(X) Oct 17, 2013
Juan Kamienkowski Warning in rankMatrix(X) Oct 18, 2013
Zero random effect variance?
6 msgs
Dave Marvin Zero random effect variance? Oct 17, 2013
Ben Bolker Zero random effect variance? Oct 17, 2013
Dave Marvin Zero random effect variance? Oct 17, 2013
David Duffy Zero random effect variance? Oct 17, 2013
Ben Bolker Zero random effect variance? Oct 17, 2013
Dave Marvin Zero random effect variance? Oct 17, 2013
Error in glmmadmb: could not find function "paste0"
4 msgs
Gabrielle Davidson Error in glmmadmb: could not find function "paste0" Oct 17, 2013
Ben Bolker Error in glmmadmb: could not find function Oct 17, 2013
Kevin Wright Error in glmmadmb: could not find function "paste0" Oct 17, 2013
Gabrielle Davidson Error in glmmadmb: could not find function "paste0" Oct 17, 2013
Update to 'metafor' Package
1 msg
Viechtbauer Wolfgang (STAT) Update to 'metafor' Package Oct 17, 2013
Save estimates as CSV
2 msgs
Anders Tisell Save estimates as CSV Oct 17, 2013
Gabriel Baud-Bovy Save estimates as CSV Oct 17, 2013
Very large standard errors in lmer
2 msgs
Dave Marvin Very large standard errors in lmer Oct 16, 2013
Seth Bigelow Very large standard errors in lmer Oct 16, 2013
GLMM question
4 msgs
Hamberg Leena (METLA) GLMM question Oct 16, 2013
Jake Westfall GLMM question Oct 16, 2013
Ben Bolker GLMM question Oct 16, 2013
Austin, Matt GLMM question Oct 16, 2013
R-sig-mixed-models Digest, Vol 82, Issue 25
1 msg
Lenth, Russell V R-sig-mixed-models Digest, Vol 82, Issue 25 Oct 16, 2013
how to get confidence intervals in using glmer in lme4 package?
2 msgs
lbp how to get confidence intervals in using glmer in lme4 package? Oct 15, 2013
Ben Bolker how to get confidence intervals in using glmer in lme4 package? Oct 16, 2013
nlme
8 msgs
Douglas Bates nlme Oct 16, 2013
Liaw, Andy nlme Oct 16, 2013
Kevin Wright nlme Oct 16, 2013
Douglas Bates nlme Oct 16, 2013
Dave Marvin nlme Oct 16, 2013
John Fox nlme Oct 16, 2013
Catherine Bois nlme Oct 16, 2013
Kevin Wright nlme Oct 16, 2013
Variances of higher-order vs. lower-order random terms
3 msgs
Jake Westfall Variances of higher-order vs. lower-order random terms Oct 15, 2013
Jake Westfall Variances of higher-order vs. lower-order random terms Oct 15, 2013
Chris Howden Variances of higher-order vs. lower-order random terms Oct 15, 2013
When is sparseX implementation expected?
4 msgs
Pete Meyer When is sparseX implementation expected? Oct 14, 2013
Ben Bolker When is sparseX implementation expected? Oct 15, 2013
Doran, Harold When is sparseX implementation expected? Oct 15, 2013
Douglas Bates When is sparseX implementation expected? Oct 15, 2013
[Lme4-authors] AIC calculation
2 msgs
Ben Bolker AIC calculation Oct 15, 2013
Ben Bolker AIC calculation Oct 15, 2013
Unrealistic fixed effect coefficients
1 msg
Seth Bigelow Unrealistic fixed effect coefficients Oct 15, 2013
Unrealistic fixed effect coefficients
3 msgs
Dave Marvin Unrealistic fixed effect coefficients Oct 14, 2013
Jake Westfall Unrealistic fixed effect coefficients Oct 14, 2013
Dave Marvin Unrealistic fixed effect coefficients Oct 15, 2013
glmmadmb- problems with explanatory variable with a lot of zeros?
1 msg
Mabille, Geraldine glmmadmb- problems with explanatory variable with a lot of zeros? Oct 15, 2013
Issue with experimental design?
6 msgs
Yla Savh Issue with experimental design? Oct 12, 2013
Ted Wright Issue with experimental design? Oct 12, 2013
Joshua Wiley Issue with experimental design? Oct 12, 2013
Ben Bolker Issue with experimental design? Oct 13, 2013
David Winsemius Issue with experimental design? Oct 13, 2013
Yla Savh Issue with experimental design? Oct 14, 2013
Call of interest: mixed modelling course in Quebec City
1 msg
Highland Statistics Ltd Call of interest: mixed modelling course in Quebec City Oct 14, 2013
implications fitting random-only slopes
3 msgs
Muldoon, Ariel implications fitting random-only slopes Oct 10, 2013
Tobias Heed implications fitting random-only slopes Oct 11, 2013
Muldoon, Ariel implications fitting random-only slopes Oct 14, 2013
effect sizes in lmer
5 msgs
Joshua Hartshorne effect sizes in lmer Oct 13, 2013
Henrik Singmann effect sizes in lmer Oct 13, 2013
Ben Bolker effect sizes in lmer Oct 13, 2013
Jake Westfall effect sizes in lmer Oct 13, 2013
Steven J. Pierce effect sizes in lmer Oct 14, 2013
effect sizes in lmer
4 msgs
Joshua Hartshorne effect sizes in lmer Oct 12, 2013
David Winsemius effect sizes in lmer Oct 12, 2013
Joshua Hartshorne effect sizes in lmer Oct 12, 2013
Henrik Singmann effect sizes in lmer Oct 13, 2013
glmmadmb- problems with explanatory variable with a lot of zeros?
2 msgs
Mabille, Geraldine glmmadmb- problems with explanatory variable with a lot of zeros? Oct 11, 2013
Ben Bolker glmmadmb- problems with explanatory variable with a lot of zeros? Oct 11, 2013
Calcul of confidence intervals of estimate coefficient by a logistic regression with random effect
2 msgs
Laetitia ETIENNE Calcul of confidence intervals of estimate coefficient by a logistic regression with random effect Oct 11, 2013
Ben Bolker Calcul of confidence intervals of estimate coefficient by a logistic regression with random effect Oct 11, 2013
glmmadmb- problems with explanatory variable with a lot of zeros?
1 msg
Mabille, Geraldine glmmadmb- problems with explanatory variable with a lot of zeros? Oct 11, 2013
Random intercepts and/or slopes
4 msgs
Maria Helena Mourino Silva Nunes Random intercepts and/or slopes Oct 10, 2013
Gabriel Baud-Bovy Random intercepts and/or slopes Oct 10, 2013
Viechtbauer Wolfgang (STAT) Random intercepts and/or slopes Oct 10, 2013
Maria Helena Mourino Silva Nunes Random intercepts and/or slopes Oct 11, 2013
model for clustered longitudinal binary data
5 msgs
Adrien Combaz model for clustered longitudinal binary data Oct 8, 2013
Ben Bolker model for clustered longitudinal binary data Oct 8, 2013
Adrien Combaz model for clustered longitudinal binary data Oct 9, 2013
Ben Bolker model for clustered longitudinal binary data Oct 9, 2013
Adrien Combaz model for clustered longitudinal binary data Oct 11, 2013
pwrssUpdate Error with new version of lme4
1 msg
Rachael Orben pwrssUpdate Error with new version of lme4 Oct 10, 2013
plot log transformed variable with Effects
1 msg
John.Morrongiello at csiro.au plot log transformed variable with Effects Oct 10, 2013
bug in refit function?
3 msgs
Alexandra Kuznetsova bug in refit function? Oct 9, 2013
Ben Bolker bug in refit function? Oct 9, 2013
Ben Bolker bug in refit function? Oct 10, 2013
Help with Delta-gamma Glmm
1 msg
xavier chevillot Help with Delta-gamma Glmm Oct 10, 2013
plot log transformed variable with Effects package
4 msgs
John.Morrongiello at csiro.au plot log transformed variable with Effects package Oct 8, 2013
Ben Bolker plot log transformed variable with Effects package Oct 9, 2013
Ben Bolker plot log transformed variable with Effects package Oct 9, 2013
John Fox plot log transformed variable with Effects package Oct 9, 2013
How to explain the difference of variables in random effects component
1 msg
Tetsuya Michinaka How to explain the difference of variables in random effects component Oct 9, 2013
random slopes and intercepts using glmmadmb - negative binomial
2 msgs
Bayes Student random slopes and intercepts using glmmadmb - negative binomial Oct 9, 2013
Ben Bolker random slopes and intercepts using glmmadmb - negative binomial Oct 9, 2013
stability of glmmADMB
2 msgs
Pau Boon Kee stability of glmmADMB Oct 5, 2013
Ben Bolker stability of glmmADMB Oct 8, 2013
MCMCglmm random intercept/slope model and credible intervals
2 msgs
Maya MCMCglmm random intercept/slope model and credible intervals Oct 7, 2013
Jarrod Hadfield MCMCglmm random intercept/slope model and credible intervals Oct 8, 2013
errors compiling minqa during lme4 install
1 msg
Dan McCloy errors compiling minqa during lme4 install Oct 7, 2013
intraclass correlation (ICC) for random intercept and slope model
1 msg
John.Morrongiello at csiro.au intraclass correlation (ICC) for random intercept and slope model Oct 7, 2013
lmer specification for maximal random effects structure and one-between and two within-subject factors
4 msgs
Gabriel Baud-Bovy lmer specification for maximal random effects structure and one-between and two within-subject factors Oct 5, 2013
Tobias Heed lmer specification for maximal random effects structure and one-between and two within-subject factors Oct 6, 2013
Gabriel Baud-Bovy lmer specification for maximal random effects structure and one-between and two within-subject factors Oct 6, 2013
Gabriel Baud-Bovy lmer specification for random effects with several within-subject factors Oct 7, 2013
mer summary not an S4 object??
2 msgs
Stuart Luppescu mer summary not an S4 object?? Oct 7, 2013
Douglas Bates mer summary not an S4 object?? Oct 7, 2013
errors compiling minqa during lme4 install
3 msgs
Dan McCloy errors compiling minqa during lme4 install Oct 6, 2013
Pantelis Z. Hadjipantelis errors compiling minqa during lme4 install Oct 6, 2013
Ben Bolker errors compiling minqa during lme4 install Oct 7, 2013
intraclass correlation (ICC) for random intercept and
2 msgs
John.Morrongiello at csiro.au intraclass correlation (ICC) for random intercept and Oct 6, 2013
Jake Westfall intraclass correlation (ICC) for random intercept and Oct 6, 2013
errors compiling minqa during lme4 install
3 msgs
Dan McCloy errors compiling minqa during lme4 install Oct 5, 2013
Pantelis Z. Hadjipantelis errors compiling minqa during lme4 install Oct 5, 2013
Ben Bolker errors compiling minqa during lme4 install Oct 5, 2013
interpretation of an individual-level random effect
2 msgs
Dominique CARVAL interpretation of an individual-level random effect Oct 3, 2013
Ben Bolker interpretation of an individual-level random effect Oct 4, 2013
errors compiling minqa during lme4 install
2 msgs
Dan McCloy errors compiling minqa during lme4 install Oct 3, 2013
Ben Bolker errors compiling minqa during lme4 install Oct 4, 2013
intraclass correlation (ICC) for random intercept and slope model
2 msgs
John.Morrongiello at csiro.au intraclass correlation (ICC) for random intercept and slope model Oct 3, 2013
Jake Westfall intraclass correlation (ICC) for random intercept and slope model Oct 3, 2013
Why does anova.merMod use refit?
5 msgs
Henrik Singmann Why does anova.merMod use refit? Oct 2, 2013
Douglas Bates Why does anova.merMod use refit? Oct 2, 2013
Henrik Singmann Why does anova.merMod use refit? Oct 2, 2013
Ben Bolker Why does anova.merMod use refit? Oct 2, 2013
Ben Bolker Why does anova.merMod use refit? Oct 2, 2013
mixed modelling with random effects with different correlation structures? GLMM/GEE mix
3 msgs
Ben Bolker mixed modelling with random effects with different correlation structures? GLMM/GEE mix Oct 1, 2013
chris.brien at iinet.net.au mixed modelling with random effects with different correlation structures? GLMM/GEE mix Oct 1, 2013
David Duffy mixed modelling with random effects with differentcorrelation structures? GLMM/GEE mix Oct 2, 2013
glmmADMB
3 msgs
Roman Luštrik glmmADMB Oct 1, 2013
Ben Bolker glmmADMB Oct 1, 2013
Ben Bolker glmmADMB Oct 1, 2013