R-SIG-mixed-models February 2014

Characterizing correlation between binomial intercepts

M

J

J

7 msgs · Feb 25 – Feb 25

M

Michael Lawrence Characterizing correlation between binomial intercepts Feb 25, 2014

J

Jake Westfall Characterizing correlation between binomial intercepts Feb 25, 2014

M

Michael Lawrence Characterizing correlation between binomial intercepts Feb 25, 2014

J

Jake Westfall Characterizing correlation between binomial intercepts Feb 25, 2014

J

Joshua Wiley Characterizing correlation between binomial intercepts Feb 25, 2014

M

Michael Lawrence Characterizing correlation between binomial intercepts Feb 25, 2014

J

Jake Westfall Characterizing correlation between binomial intercepts Feb 25, 2014

Checking overdispersion in binomial mixed model

T

S

3 msgs · Feb 7 – Feb 7

T

Tom Wenseleers Checking overdispersion in binomial mixed model Feb 7, 2014

S

S Ellison Checking overdispersion in binomial mixed model Feb 7, 2014

T

Tom Wenseleers Checking overdispersion in binomial mixed model Feb 7, 2014

Combining two sets of subplots obtained with different protocols

B

1 msg · Feb 2

B

Baldwin, Jim -FS Combining two sets of subplots obtained with different protocols Feb 2, 2014

Combining two sets of subplots obtained with different protocols

D

2 msgs · Feb 2 – Feb 2

D

Diaci, Jurij Combining two sets of subplots obtained with different protocols Feb 2, 2014

D

Diaci, Jurij Combining two sets of subplots obtained with different protocols Feb 2, 2014

Converging mixed models with large number of random coefficients

T

H

2 msgs · Feb 10 – Feb 11

T

Thomas Schroder Converging mixed models with large number of random coefficients Feb 10, 2014

H

Hans Ekbrand Converging mixed models with large number of random coefficients Feb 11, 2014

Creation of a dummy variable with Lme4

B

1 msg · Feb 28

B

Ben Bolker Creation of a dummy variable with Lme4 Feb 28, 2014

Differences in autocorrelation between GLS and LME?

Y

1 msg · Feb 6

Y

Yla Savh Differences in autocorrelation between GLS and LME? Feb 6, 2014

Error in sprintf

A

B

5 msgs · Feb 25 – Feb 27

A

Alexej Siren Error in sprintf Feb 25, 2014

A

Alexej Siren Error in sprintf Feb 25, 2014

B

Ben Bolker Error in sprintf Feb 26, 2014

B

Ben Bolker Error in sprintf Feb 26, 2014

A

Alexej Siren Error in sprintf Feb 27, 2014

GLMM R package

B

1 msg · Feb 23

B

Ben Bolker GLMM R package Feb 23, 2014

Help with analyzing multivariate outcomes

M

3 msgs · Feb 21 – Feb 25

M

marKo Help with analyzing multivariate outcomes Feb 21, 2014

M

marKo Help with analyzing multivariate outcomes Feb 21, 2014

M

marKo Help with analyzing multivariate outcomes Feb 25, 2014

Help: Split-Split model nested in a nested structure

Z

I

3 msgs · Feb 21 – Feb 22

Z

Zia Ahmed Help: Split-Split model nested in a nested structure Feb 21, 2014

Z

Zia Ahmed Help: Split-Split model nested in a nested structure Feb 22, 2014

I

iwhite@staffmail.ed.ac.uk Help: Split-Split model nested in a nested structure Feb 22, 2014

How do you do?

T

1 msg · Feb 19

T

Tina Wey How do you do? Feb 19, 2014

Huber-White standard errors for glmer Poisson fits

T

B

S

4 msgs · Feb 17 – Feb 17

T

Theodore Lytras Huber-White standard errors for glmer Poisson fits Feb 17, 2014

B

Ben Bolker Huber-White standard errors for glmer Poisson fits Feb 17, 2014

S

Steve Walker Huber-White standard errors for glmer Poisson fits Feb 17, 2014

T

Theodore Lytras Huber-White standard errors for glmer Poisson fits Feb 17, 2014

MCMCglmm and massing records in relation to ainv

S

J

2 msgs · Feb 13 – Feb 14

S

Szymek Drobniak MCMCglmm and massing records in relation to ainv Feb 13, 2014

J

Jarrod Hadfield MCMCglmm and massing records in relation to ainv Feb 14, 2014

MCMCglmm model for heteroskedasticity at level one

J

M

3 msgs · Feb 6 – Feb 18

J

Jarrod Hadfield MCMCglmm model for heteroskedasticity at level one Feb 6, 2014

M

Maxim Kovalenko MCMCglmm model for heteroskedasticity at level one Feb 18, 2014

J

Jarrod Hadfield MCMCglmm model for heteroskedasticity at level one Feb 18, 2014

Maximal random-effects lmer not converging

S

1 msg · Feb 2

S

Stephen Politzer-Ahles Maximal random-effects lmer not converging Feb 2, 2014

Model is nearly unidentifiable with glmer

R

M

D

7 msgs · Feb 19 – Feb 26

R

Ramon Diaz-Uriarte Model is nearly unidentifiable with glmer Feb 19, 2014

R

Ramon Diaz-Uriarte Model is nearly unidentifiable with glmer Feb 24, 2014

M

Martin Maechler Model is nearly unidentifiable with glmer Feb 24, 2014

R

Ramon Diaz-Uriarte Model is nearly unidentifiable with glmer Feb 24, 2014

R

Ramon Diaz-Uriarte Model is nearly unidentifiable with glmer Feb 25, 2014

D

David Duffy Model is nearly unidentifiable with glmer Feb 25, 2014

R

Ramon Diaz-Uriarte Model is nearly unidentifiable with glmer Feb 26, 2014

Modelling heterogeneous variances for an interaction term in MCMCglmm?

J

J

8 msgs · Feb 12 – Feb 18

J

Jackie Wood Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 12, 2014

J

Jarrod Hadfield Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 13, 2014

J

Jackie Wood Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 13, 2014

J

Jarrod Hadfield Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 13, 2014

J

Jackie Wood Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 13, 2014

J

Jarrod Hadfield Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 13, 2014

J

Jackie Wood Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 18, 2014

J

Jarrod Hadfield Modelling heterogeneous variances for an interaction term in MCMCglmm? Feb 18, 2014

MuMin package - use of AICc or QAICc?

A

1 msg · Feb 7

A

Alexa Varah MuMin package - use of AICc or QAICc? Feb 7, 2014

Multiresponse MCMCglmm model specification and questions

J

1 msg · Feb 6

J

Jarrod Hadfield Multiresponse MCMCglmm model specification and questions Feb 6, 2014

Multivariate multilevel analysis with nlme

C

1 msg · Feb 12

C

Corentin Gonthier Multivariate multilevel analysis with nlme Feb 12, 2014

Need help with MCMCglmm

J

1 msg · Feb 6

J

Jarrod Hadfield Need help with MCMCglmm Feb 6, 2014

Order in which variance components are reported

A

B

D

4 msgs · Feb 19 – Feb 26

A

Asaf Weinstein Order in which variance components are reported Feb 19, 2014

B

Ben Bolker Order in which variance components are reported Feb 22, 2014

D

Douglas Bates Order in which variance components are reported Feb 22, 2014

A

Asaf Weinstein Order in which variance components are reported Feb 26, 2014

Pedigreemm on lme4-1.0

J

B

D

8 msgs · Feb 14 – Feb 19

J

Joehanes, Roby (NIH/NHLBI) [F] Pedigreemm on lme4-1.0 Feb 14, 2014

B

Ben Bolker Pedigreemm on lme4-1.0 Feb 14, 2014

J

Joehanes, Roby (NIH/NHLBI) [F] Pedigreemm on lme4-1.0 Feb 14, 2014

B

Ben Bolker Pedigreemm on lme4-1.0 Feb 14, 2014

B

Ben Bolker Pedigreemm on lme4-1.0 Feb 18, 2014

D

David Duffy Pedigreemm on lme4-1.0 Feb 18, 2014

B

Ben Bolker Pedigreemm on lme4-1.0 Feb 19, 2014

D

David Duffy Pedigreemm on lme4-1.0 Feb 19, 2014

Problems installing lme4 1.0-6 (won't compile due to Rcpp not compiling)

A

B

2 msgs · Feb 24 – Feb 26

A

Austin, Peter Problems installing lme4 1.0-6 (won't compile due to Rcpp not compiling) Feb 24, 2014

B

Ben Bolker Problems installing lme4 1.0-6 (won't compile due to Rcpp not compiling) Feb 26, 2014

R2 of a linear mixed model in the "nlme" package

D

N

F

3 msgs · Feb 18 – Feb 19

D

Douglas Bates R2 of a linear mixed model in the "nlme" package Feb 18, 2014

N

Nick Isaac R2 of a linear mixed model in the "nlme" package Feb 18, 2014

F

Friso Muijsers R2 of a linear mixed model in the "nlme" package Feb 19, 2014

R: random structure in lmer

B

1 msg · Feb 11

B

Ben Bolker R: random structure in lmer Feb 11, 2014

Recreating tree allometry model comparisons (Banin et al. 2012)

K

2 msgs · Feb 3 – Feb 4

K

Koen Hufkens Recreating tree allometry model comparisons (Banin et al. 2012) Feb 3, 2014

K

Koen Hufkens Recreating tree allometry model comparisons (Banin et al. 2012) Feb 4, 2014

Simple: don't understand lmer formula and slopes

V

1 msg · Feb 1

V

Viechtbauer Wolfgang (STAT) Simple: don't understand lmer formula and slopes Feb 1, 2014

Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2

T

B

J

8 msgs · Feb 7 – Feb 7

T

Tom Wenseleers Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

B

Ben Bolker Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

J

Jake Westfall Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

T

Tom Wenseleers Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

S

Steve Walker Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

T

Tom Wenseleers Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

U

Ulf Köther Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

B

Ben Bolker Slight differences in fitted coefficients in lme4_1.0-6 compared to lme4_0.999999-2 Feb 7, 2014

Specify prior for sir-function and starting values in the MCMCglmm packages?

J

1 msg · Feb 6

J

Jarrod Hadfield Specify prior for sir-function and starting values in the MCMCglmm packages? Feb 6, 2014

Specifying fixed residual variances for multilevel models

Z

V

V

3 msgs · Feb 22 – Feb 25

Z

Zaslavsky, Alan M. Specifying fixed residual variances for multilevel models Feb 22, 2014

V

Vincent Dorie Specifying fixed residual variances for multilevel models Feb 24, 2014

V

Viechtbauer Wolfgang (STAT) Specifying fixed residual variances for multilevel models Feb 25, 2014

Split-Split model in nested structure

Z

1 msg · Feb 22

Z

Zia Ahmed Split-Split model in nested structure Feb 22, 2014

Unable to install glmmadmb

E

B

2 msgs · Feb 13 – Feb 13

E

Emma Stone Unable to install glmmadmb Feb 13, 2014

B

Ben Bolker Unable to install glmmadmb Feb 13, 2014

Variance Inflation Factors

N

J

4 msgs · Feb 18 – Feb 21

N

Nick Isaac Variance Inflation Factors Feb 18, 2014

N

Nick Isaac Variance Inflation Factors Feb 18, 2014

N

Nick Isaac Variance Inflation Factors Feb 21, 2014

J

John Fox Variance Inflation Factors Feb 21, 2014

bug/problem with update for merMod

A

B

3 msgs · Feb 7 – Feb 7

A

Alexandra Kuznetsova bug/problem with update for merMod Feb 7, 2014

B

Ben Bolker bug/problem with update for merMod Feb 7, 2014

B

Ben Bolker bug/problem with update for merMod Feb 7, 2014

confint.merMod(): method = "boot" throws error

B

B

2 msgs · Feb 26 – Feb 26

B

Bertolt Meyer confint.merMod(): method = "boot" throws error Feb 26, 2014

B

Ben Bolker confint.merMod(): method = "boot" throws error Feb 26, 2014

error using predict() with lmer

B

1 msg · Feb 25

B

Ben Bolker error using predict() with lmer Feb 25, 2014

glmer function in lme4 - false convergence warning message, (Austin, Peter)

H

1 msg · Feb 23

H

Highland Statistics Ltd glmer function in lme4 - false convergence warning message, (Austin, Peter) Feb 23, 2014

glmer function in lme4 - false convergence warning message

A

1 msg · Feb 22

A

Austin, Peter glmer function in lme4 - false convergence warning message Feb 22, 2014

glmer function in lme4 package

D

1 msg · Feb 21

D

Douglas Bates glmer function in lme4 package Feb 21, 2014

glmmADMB (mixed binomal random effects)

B

1 msg · Feb 28

B

Ben Bolker glmmADMB (mixed binomal random effects) Feb 28, 2014

help with pdDiag and nlme

A

1 msg · Feb 6

A

Anne Hoen help with pdDiag and nlme Feb 6, 2014

installing lme4.0 on OS X 10.9

R

T

H

9 msgs · Feb 7 – Feb 10

R

Roger Levy installing lme4.0 on OS X 10.9 Feb 7, 2014

T

Tobias Heed installing lme4.0 on OS X 10.9 Feb 7, 2014

R

Roger Levy installing lme4.0 on OS X 10.9 Feb 9, 2014

H

Hugo.Mildenberger at web.de installing lme4.0 on OS X 10.9 Feb 9, 2014

T

Tobias Heed installing lme4.0 on OS X 10.9 Feb 10, 2014

C

Cole, Tim installing lme4.0 on OS X 10.9 Feb 10, 2014

S

Simon Urbanek installing lme4.0 on OS X 10.9 Feb 10, 2014

R

Roger Levy installing lme4.0 on OS X 10.9 Feb 10, 2014

S

Simon Urbanek installing lme4.0 on OS X 10.9 Feb 10, 2014

interpretation of predict plot (glmer)

B

B

2 msgs · Feb 2 – Feb 3

B

Ben Bolker interpretation of predict plot (glmer) Feb 2, 2014

B

Barbara horta e costa interpretation of predict plot (glmer) Feb 3, 2014

issue with glmer() with the newest updated lme4 version

B

1 msg · Feb 14

B

Ben Bolker issue with glmer() with the newest updated lme4 version Feb 14, 2014

likelihood-ratio tests in conflict with coefficiants in maximal random effect model

E

D

B

6 msgs · Feb 28 – Feb 28

E

Emilia Ellsiepen likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

D

Douglas Bates likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

B

Ben Bolker likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

R

Roger Levy likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

D

Douglas Bates likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

R

Roger Levy likelihood-ratio tests in conflict with coefficiants in maximal random effect model Feb 28, 2014

lme4 problem solved by updating Rcpp

H

B

2 msgs · Feb 20 – Feb 22

H

Hugo Quené lme4 problem solved by updating Rcpp Feb 20, 2014

B

Ben Bolker lme4 problem solved by updating Rcpp Feb 22, 2014

lme4: constrain sigma to 0

A

R

V

16 msgs · Feb 11 – Feb 13

A

Asaf Weinstein lme4: constrain sigma to 0 Feb 11, 2014

R

Rolf Turner lme4: constrain sigma to 0 Feb 11, 2014

R

Rolf Turner lme4: constrain sigma to 0 Feb 11, 2014

V

Vincent Dorie lme4: constrain sigma to 0 Feb 11, 2014

J

Jake Westfall lme4: constrain sigma to 0 Feb 11, 2014

S

Stuart Luppescu lme4: constrain sigma to 0 Feb 11, 2014

V

Vincent Dorie lme4: constrain sigma to 0 Feb 12, 2014

V

Viechtbauer Wolfgang (STAT) lme4: constrain sigma to 0 Feb 12, 2014

R

Rolf Turner lme4: constrain sigma to 0 Feb 12, 2014

V

Viechtbauer Wolfgang (STAT) lme4: constrain sigma to 0 Feb 13, 2014

R

Rolf Turner lme4: constrain sigma to 0 Feb 13, 2014

R

Rolf Turner lme4: constrain sigma to 0 Feb 13, 2014

A

Asaf Weinstein lme4: constrain sigma to 0 Feb 13, 2014

V

Vincent Dorie lme4: constrain sigma to 0 Feb 13, 2014

V

Vincent Dorie lme4: constrain sigma to 0 Feb 13, 2014

V

Vincent Dorie lme4: constrain sigma to 0 Feb 13, 2014

lme4: constrain sigma to 0 [SEC=Unclassified]

S

D

2 msgs · Feb 11 – Feb 12

S

Steve Candy lme4: constrain sigma to 0 [SEC=Unclassified] Feb 11, 2014

D

David Duffy lme4: constrain sigma to 0 [SEC=Unclassified] Feb 12, 2014

lmer estimates account for random effect?

D

1 msg · Feb 18

D

Daniel Cher lmer estimates account for random effect? Feb 18, 2014

mixed effect model question

T

1 msg · Feb 18

T

Thijs vanden Bergh mixed effect model question Feb 18, 2014

model specification for 2x2x2 factorial between-subjects design with repeated measures

B

S

C

4 msgs · Feb 4 – Feb 5

B

Bruce Gilstrap model specification for 2x2x2 factorial between-subjects design with repeated measures Feb 4, 2014

S

Stephen Politzer-Ahles model specification for 2x2x2 factorial between-subjects design with repeated measures Feb 5, 2014

C

Cole, Tim model specification for 2x2x2 factorial between-subjects design with repeated measures Feb 5, 2014

J

Jake Westfall model specification for 2x2x2 factorial between-subjects design with repeated measures Feb 5, 2014

new version of lme4 - Log-Likelihood of model returned as "-Inf"

J

B

5 msgs · Feb 12 – Feb 13

J

juwb08 at hampshire.edu new version of lme4 - Log-Likelihood of model returned as "-Inf" Feb 12, 2014

J

juwb08 at hampshire.edu new version of lme4 - Log-Likelihood of model returned as "-Inf" Feb 12, 2014

B

Ben Bolker new version of lme4 - Log-Likelihood of model returned as "-Inf" Feb 12, 2014

B

Ben Bolker new version of lme4 - Log-Likelihood of model returned as "-Inf" Feb 12, 2014

B

Ben Bolker new version of lme4 - Log-Likelihood of model returned as "-Inf" Feb 13, 2014

nlmer self starting function

D

B

2 msgs · Feb 25 – Feb 28

D

Daniel Hocking nlmer self starting function Feb 25, 2014

B

Ben Bolker nlmer self starting function Feb 28, 2014

order of models when using anova

J

S

R

5 msgs · Feb 20 – Feb 20

J

Juliet Hannah order of models when using anova Feb 20, 2014

S

Steve Taylor order of models when using anova Feb 20, 2014

R

Rolf Turner order of models when using anova Feb 20, 2014

J

Juliet Hannah order of models when using anova Feb 20, 2014

R

Rolf Turner order of models when using anova Feb 20, 2014

pedigreemm number of levels per grouping factor

W

B

D

7 msgs · Feb 4 – Feb 11

W

Wilson, Alastair pedigreemm number of levels per grouping factor Feb 4, 2014

B

Ben Bolker pedigreemm number of levels per grouping factor Feb 5, 2014

W

Wilson, Alastair pedigreemm number of levels per grouping factor Feb 6, 2014

D

David Duffy pedigreemm number of levels per grouping factor Feb 8, 2014

B

Ben Bolker pedigreemm number of levels per grouping factor Feb 9, 2014

D

David Duffy pedigreemm number of levels per grouping factor Feb 9, 2014

W

Wilson, Alastair pedigreemm number of levels per grouping factor Feb 11, 2014

prediction from glmer.nb

T

1 msg · Feb 27

T

Thomas Lee Anderson prediction from glmer.nb Feb 27, 2014

predictions from MCMCglmm multinomial model

J

1 msg · Feb 6

J

Jarrod Hadfield predictions from MCMCglmm multinomial model Feb 6, 2014

prunePed in MCMCglmm

A

D

2 msgs · Feb 4 – Feb 4

A

Adam Hayward prunePed in MCMCglmm Feb 4, 2014

D

David Duffy prunePed in MCMCglmm Feb 4, 2014

random slope model overinflate CI?s

G

1 msg · Feb 9

G

Greg Guerin random slope model overinflate CI?s Feb 9, 2014

random slope model overinflate CIs (Greg Guerin)

J

1 msg · Feb 10

J

Juan Santos random slope model overinflate CIs (Greg Guerin) Feb 10, 2014

random slope model overinflate CI´s

J

1 msg · Feb 7

J

Juan Santos random slope model overinflate CI´s Feb 7, 2014

random slopes versus nested random intercepts

H

J

2 msgs · Feb 1 – Feb 1

H

Henrik Singmann random slopes versus nested random intercepts Feb 1, 2014

J

Jake Westfall random slopes versus nested random intercepts Feb 1, 2014

random structure in lmer

C

B

2 msgs · Feb 11 – Feb 11

C

Cerni, Tania random structure in lmer Feb 11, 2014

B

Ben Bolker random structure in lmer Feb 11, 2014

spatial GLMMs

B

K

2 msgs · Feb 24 – Feb 24

B

Ben Bolker spatial GLMMs Feb 24, 2014

K

Kevin Wright spatial GLMMs Feb 24, 2014