R-SIG-mixed-models April 2014

Thread Subject Author Date

120 messages in 55 threads

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MCMCglmm: starting values and variance explained by random effects

1 msg Apr 30

Mieke Zwart MCMCglmm: starting values and variance explained by random effects Apr 30, 2014

previous posts about error message in glmmADMB

1 msg Apr 30

Lena previous posts about error message in glmmADMB Apr 30, 2014

gamm4 error with large dataset

2 msgs Apr 30

Daniel Hocking gamm4 error with large dataset Apr 30, 2014

Ben Bolker gamm4 error with large dataset Apr 30, 2014

Comparison of 2 treatments

2 msgs Apr 30

Hamada Elsayed Ali Comparison of 2 treatments Apr 30, 2014

Ben Bolker Comparison of 2 treatments Apr 30, 2014

Should I use GLMM?

2 msgs Apr 29

Rodrigo Tardin Should I use GLMM? Apr 25, 2014

Ben Bolker Should I use GLMM? Apr 29, 2014

confint.merMod() problem.

2 msgs Apr 29

Zaslavsky, Alan M. confint.merMod() problem. Apr 28, 2014

Ben Bolker confint.merMod() problem. Apr 29, 2014

linear mixed model for non-normal negative and continous data

3 msgs Apr 28

Caroline Lustenberger linear mixed model for non-normal negative and continous data Apr 28, 2014

Titus von der Malsburg linear mixed model for non-normal negative andcontinous dataa Apr 28, 2014

Simon Blomberg linear mixed model for non-normal negative and continous data Apr 28, 2014

Profile likelihood using R2admb

2 msgs Apr 28

Stirrup, Oliver Profile likelihood using R2admb Apr 25, 2014

Ben Bolker Profile likelihood using R2admb Apr 28, 2014

Multi Processor / lme4

6 msgs Apr 28

Ben Bolker Multi Processor / lme4 Apr 27, 2014

Nathan Doogan Multi Processor / lme4 Apr 27, 2014

Doogan, Nathan Multi Processor / lme4 Apr 27, 2014

Ben Bolker Multi Processor / lme4 Apr 27, 2014

Doogan, Nathan Multi Processor / lme4 Apr 27, 2014

Douglas Bates Multi Processor / lme4 Apr 28, 2014

lme4 Error Help: “maxstephalfit…pwrssUpdate”

3 msgs Apr 28

ONKELINX, Thierry lme4 Error Help: “maxstephalfit…pwrssUpdate” Apr 27, 2014

Craig O'Connell lme4 Error Help: “maxstephalfit…pwrssUpdate” Apr 28, 2014

Ben Bolker lme4 Error Help: “maxstephalfit…pwrssUpdate” Apr 28, 2014

linear mixed model for non-normal negative and continous data

1 msg Apr 28

ONKELINX, Thierry linear mixed model for non-normal negative and continous data Apr 28, 2014

glmerMod with covariance matrix set to 0?

3 msgs Apr 27

Elizabeth Crone glmerMod with covariance matrix set to 0? Apr 27, 2014

Ben Bolker glmerMod with covariance matrix set to 0? Apr 27, 2014

Gabriel Baud-Bovy new syntax for lme ? Apr 27, 2014

error message in pamer.fnc

1 msg Apr 26

xiaoming jiang error message in pamer.fnc Apr 26, 2014

reporting parameter estimates for factors using sum/deviation coding

1 msg Apr 25

David Sears reporting parameter estimates for factors using sum/deviation coding Apr 25, 2014

Fitting Non linear mixed effects models

1 msg Apr 24

Ernest William Mauya Fitting Non linear mixed effects models Apr 24, 2014

Profile likelihood using R2admb

2 msgs Apr 24

Stirrup, Oliver Profile likelihood using R2admb Apr 24, 2014

Ben Bolker Profile likelihood using R2admb Apr 24, 2014

multinomial model with MCMCglmm by using gelman.prior

1 msg Apr 23

Saussac Mathilde multinomial model with MCMCglmm by using gelman.prior Apr 23, 2014

Calculate % Variance Attributed to Random Slopes (Phenotypic Plasticity)

3 msgs Apr 23

AvianResearchDivision Calculate % Variance Attributed to Random Slopes (Phenotypic Plasticity) Apr 22, 2014

Jake Westfall Calculate % Variance Attributed to Random Slopes (Phenotypic Plasticity) Apr 22, 2014

Paul Johnson Calculate % Variance Attributed to Random Slopes (Phenotypic Plasticity) Apr 23, 2014

error distribution or transformation for Acid-neutralizing-capacity (ANC)

3 msgs Apr 23

Brooks Miner error distribution or transformation for Acid-neutralizing-capacity (ANC) Apr 22, 2014

Ewart Thomas error distribution or transformation for Acid-neutralizing-capacity (ANC) Apr 22, 2014

ONKELINX, Thierry error distribution or transformation for Acid-neutralizing-capacity (ANC) Apr 23, 2014

example of confidence intervals for predicted values?

1 msg Apr 22

Paul Johnson example of confidence intervals for predicted values? Apr 22, 2014

lme4/glmer convergence warnings

3 msgs Apr 22

Corey Sparks lme4/glmer convergence warnings Apr 10, 2014

Ben Bolker lme4/glmer convergence warnings Apr 10, 2014

Paul Johnson lme4/glmer convergence warnings Apr 22, 2014

Mixed-effects conditional logistic regression in lme4 v. 1.0-4 and above

1 msg Apr 22

Javan Bauder Mixed-effects conditional logistic regression in lme4 v. 1.0-4 and above Apr 22, 2014

Model specification (fixed and random effects)?

2 msgs Apr 22

Yla Savh Model specification (fixed and random effects)? Apr 22, 2014

ONKELINX, Thierry Model specification (fixed and random effects)? Apr 22, 2014

Is this a legitimate approach

1 msg Apr 21

Junyan Luo Is this a legitimate approach Apr 21, 2014

MCMC prior issues

2 msgs Apr 21

David Bradley MCMC prior issues Apr 16, 2014

Ben Bolker MCMC prior issues Apr 21, 2014

hard in lmer(),how to set parameter in lmer()

2 msgs Apr 21

王唯 hard in lmer(),how to set parameter in lmer() Apr 19, 2014

Ben Bolker hard in lmer(),how to set parameter in lmer() Apr 21, 2014

Installing an old version of lme4 (v 0.999999-2)

2 msgs Apr 21

Javan Bauder Installing an old version of lme4 (v 0.999999-2) Apr 21, 2014

Ben Bolker Installing an old version of lme4 (v 0.999999-2) Apr 21, 2014

Power Analysis for Linear Mixed Model with Covariates

2 msgs Apr 20

Gerasimos Fergadiotis Power Analysis for Linear Mixed Model with Covariates Apr 19, 2014

Ben Bolker Power Analysis for Linear Mixed Model with Covariates Apr 20, 2014

Model selection GLM vs. GLMMs

2 msgs Apr 20

Nelida Villasenor Model selection GLM vs. GLMMs Apr 19, 2014

Ben Bolker Model selection GLM vs. GLMMs Apr 20, 2014

Power Analysis for Linear Mixed Model with Covariates

2 msgs Apr 18

Gerasimos Fergadiotis Power Analysis for Linear Mixed Model with Covariates Apr 18, 2014

Steve Walker Power Analysis for Linear Mixed Model with Covariates Apr 18, 2014

sum coding, omnibus tests for GLMMs, and pvalues for LMMs

2 msgs Apr 18

David Sears sum coding, omnibus tests for GLMMs, and pvalues for LMMs Apr 17, 2014

Ramon Diaz-Uriarte sum coding, omnibus tests for GLMMs, and pvalues for LMMs Apr 18, 2014

Power Analysis for Linear Mixed Model with Covariates

2 msgs Apr 17

Gerasimos Fergadiotis Power Analysis for Linear Mixed Model with Covariates Apr 17, 2014

Ben Bolker Power Analysis for Linear Mixed Model with Covariates Apr 17, 2014

Reconciling Near Identical AIC Values and Highly Significant P Value (Ben Bolker)

1 msg Apr 15

Ed Merkle Reconciling Near Identical AIC Values and Highly Significant P Value (Ben Bolker) Apr 15, 2014

Individual coef() not congruent with panel plot of data

2 msgs Apr 15

AvianResearchDivision Individual coef() not congruent with panel plot of data Apr 15, 2014

AvianResearchDivision Individual coef() not congruent with panel plot of data Apr 15, 2014

Individual coef() not congruent with panel plot of data

1 msg Apr 15

AvianResearchDivision Individual coef() not congruent with panel plot of data Apr 15, 2014

difficulty fitting a model with nlme()

1 msg Apr 15

Anne Hoen difficulty fitting a model with nlme() Apr 15, 2014

Reconciling Near Identical AIC Values and Highly Significant P Value

4 msgs Apr 14

AvianResearchDivision Reconciling Near Identical AIC Values and Highly Significant P Value Apr 13, 2014

Emmanuel Curis Reconciling Near Identical AIC Values and Highly Significant P Value Apr 13, 2014

AvianResearchDivision Reconciling Near Identical AIC Values and Highly Significant P Value Apr 14, 2014

Ben Bolker Reconciling Near Identical AIC Values and Highly Significant P Value Apr 14, 2014

Reconciling Near Identical AIC Values and Highly

1 msg Apr 14

Elizabeth Crone Reconciling Near Identical AIC Values and Highly Apr 14, 2014

lme4 and solve(Hessian, gradient) check: Discrepancies between AMD/Intel/32bit/64bit?

1 msg Apr 11

Tom Davis lme4 and solve(Hessian, gradient) check: Discrepancies between AMD/Intel/32bit/64bit? Apr 11, 2014

questions about how to incorporate survey weights into multilevel model and etc.

1 msg Apr 11

Corey Sparks questions about how to incorporate survey weights into multilevel model and etc. Apr 11, 2014

lme4/glmer convergence warnings

13 msgs Apr 10

Robert Long lme4/glmer convergence warnings Apr 2, 2014

Robert Long lme4/glmer convergence warnings Apr 2, 2014

Ben Bolker lme4/glmer convergence warnings Apr 2, 2014

Robert Long lme4/glmer convergence warnings Apr 2, 2014

Robert Long lme4/glmer convergence warnings Apr 4, 2014

Tibor Kiss lme4/glmer convergence warnings Apr 6, 2014

Ben Bolker lme4/glmer convergence warnings Apr 6, 2014

Ben Bolker lme4/glmer convergence warnings Apr 9, 2014

Robert Long lme4/glmer convergence warnings Apr 10, 2014

Ben Bolker lme4/glmer convergence warnings Apr 10, 2014

Robert Long lme4/glmer convergence warnings Apr 10, 2014

Ben Bolker lme4/glmer convergence warnings Apr 10, 2014

Robert Long lme4/glmer convergence warnings Apr 10, 2014

Use of offset variable when analysing rates in lme4

2 msgs Apr 9

Åström, Jens Use of offset variable when analysing rates in lme4 Apr 9, 2014

Caroli Use of offset variable when analysing rates in lme4 Apr 9, 2014

Logarithmic Mixed Models?

3 msgs Apr 8

AvianResearchDivision Logarithmic Mixed Models? Apr 8, 2014

Ben Bolker Logarithmic Mixed Models? Apr 8, 2014

Friso Muijsers Logarithmic Mixed Models? Apr 8, 2014

lme4 convergence warnings and confirmatory path analysis with hierarchical data

2 msgs Apr 8

Margaret Metz lme4 convergence warnings and confirmatory path analysis with hierarchical data Apr 3, 2014

Ben Bolker lme4 convergence warnings and confirmatory path analysis with hierarchical data Apr 8, 2014

Including Nested Factor in Repeated Measures Logistic Regression

4 msgs Apr 8

Maxwell Elliott Including Nested Factor in Repeated Measures Logistic Regression Apr 1, 2014

Maxwell Elliott Including Nested Factor in Repeated Measures Logistic Regression Apr 8, 2014

iwhite@staffmail.ed.ac.uk Including Nested Factor in Repeated Measures Logistic Regression Apr 8, 2014

Maxwell Elliott Including Nested Factor in Repeated Measures Logistic Regression Apr 8, 2014

questions about how to incorporate survey weights into multilevel model and etc.

1 msg Apr 8

Sang Won Han questions about how to incorporate survey weights into multilevel model and etc. Apr 8, 2014

interpreting interactions

5 msgs Apr 8

Joshua Hartshorne interpreting interactions Apr 5, 2014

Ben Bolker interpreting interactions Apr 7, 2014

Jonathan Baron interpreting interactions Apr 8, 2014

Jonathan Baron interpreting interactions Apr 8, 2014

Jonathan Baron interpreting interactions Apr 8, 2014

Query on predicting from GLMM to new data with a different range of values of the random term

2 msgs Apr 8

Alice Jones Query on predicting from GLMM to new data with a different range of values of the random term Apr 8, 2014

ONKELINX, Thierry Query on predicting from GLMM to new data with a different range of values of the random term Apr 8, 2014

2 msgs Apr 7

Moshiur Rahman glmer output Apr 6, 2014

Krause, R.W. (Robert) glmer output Apr 7, 2014

Stats courses in Australia

1 msg Apr 3

Highland Statistics Ltd Stats courses in Australia Apr 3, 2014

Use of offset variable when analysing rates in lme4

2 msgs Apr 3

caroli at sun.ac.za (De Waal, C, Mej Use of offset variable when analysing rates in lme4 Apr 2, 2014

ONKELINX, Thierry Use of offset variable when analysing rates in lme4 Apr 3, 2014

Simulating hierarchical data with correlated errors

1 msg Apr 2

Raluca Gui Simulating hierarchical data with correlated errors Apr 2, 2014

Simulating hierarchical data with correlated errors

2 msgs Apr 1

Raluca Gui Simulating hierarchical data with correlated errors Apr 1, 2014

Greg Snow Simulating hierarchical data with correlated errors Apr 1, 2014

lme4 with simulated hierarchical data with correlated errors

3 msgs Apr 1

Raluca Gui lme4 with simulated hierarchical data with correlated errors Apr 1, 2014

Ben Bolker lme4 with simulated hierarchical data with correlated errors Apr 1, 2014

Markus Jäntti lme4 with simulated hierarchical data with correlated errors Apr 1, 2014

summary fn zero-inflated MCMC models.

1 msg Apr 1

Hodsoll, John summary fn zero-inflated MCMC models. Apr 1, 2014