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R-SIG-mixed-models July 2014

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Anastasiia Romanova

Last active: Jul 9, 2014
1 msg
Anastasiia Romanova A question on item random effects Jul 9, 2014

Anna-Marie Corman

Last active: Jul 21, 2014
3 msgs
Anna-Marie Corman LMM: including ranef or not? Jul 21, 2014 Anna-Marie Corman LMM: including ranef or not? Jul 21, 2014 Anna-Marie Corman LMM: including ranef or not? Jul 21, 2014

Baldwin, Jim -FS

Last active: Jul 29, 2014
1 msg
Baldwin, Jim -FS Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 29, 2014

Ben Bolker

Last active: Jul 30, 2014
33 msgs
Ben Bolker R2admb-package Jul 1, 2014 Ben Bolker R2admb-package Jul 2, 2014 Ben Bolker Error in lme4 package Jul 3, 2014 Ben Bolker Using glmm for penalised spline model Jul 4, 2014 Ben Bolker Getting the error message: Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate when trying to fit glmer to my data Jul 5, 2014 Ben Bolker glmer convergence warning Jul 5, 2014 Ben Bolker How to extract convergence code from lmer object? Jul 7, 2014 Ben Bolker gls function - goodness of fit Jul 8, 2014 Ben Bolker A question on item random effects Jul 9, 2014 Ben Bolker gamm4 model fit error Jul 13, 2014 Ben Bolker gamm4 model fit error Jul 13, 2014 Ben Bolker Very important question regarding the error while using library(lme4) Jul 14, 2014 Ben Bolker R2admb-package Jul 14, 2014 Ben Bolker Very important question regarding the error while using library(lme4) Jul 15, 2014 Ben Bolker Very important question regarding the error while using library(lme4) Jul 16, 2014 Ben Bolker Question regarding the estimation of the correlation between random intercepts and random slopes in the lme4 package Jul 16, 2014 Ben Bolker Significance of Repeatablity Estimates Jul 16, 2014 Ben Bolker How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 16, 2014 Ben Bolker Negative binomial in glmmadmb Jul 17, 2014 Ben Bolker How is the covariance factor computed? Jul 17, 2014 Ben Bolker Checking modeling assumptions in a binomial GLMM Jul 17, 2014 Ben Bolker Checking modeling assumptions in a binomial GLMM Jul 17, 2014 Ben Bolker How is the covariance factor computed? Jul 18, 2014 Ben Bolker question about lme4 Jul 18, 2014 Ben Bolker glmmADMB package Jul 19, 2014 Ben Bolker LMM: including ranef or not? Jul 21, 2014 Ben Bolker Question on semiparametric bootstrap in lme4 Jul 22, 2014 Ben Bolker Error in Profile likelihood based confidence intervals in glmer() Jul 22, 2014 Ben Bolker Providing starting values for glmer() Jul 23, 2014 Ben Bolker glmer z values binomial data Jul 23, 2014 Ben Bolker Install flexlambda- and master-lme4 from Github Jul 23, 2014 Ben Bolker How to check if the interaction term is significant? Jul 27, 2014 Ben Bolker lme4.0 vs. lme4 version 1.1-7: newer version returns inflated SE using glmer() with bobyqa optimizer Jul 30, 2014

Berin Mackenzie

Last active: Jul 29, 2014
1 msg
Berin Mackenzie Pseudoreplication in a factorial GLM with a proportional response variable and categorical predictor variables Jul 29, 2014

Celine Teplitsky

Last active: Jul 11, 2014
1 msg
Celine Teplitsky No residual variance using MCMCglmm Jul 11, 2014

ChenChun

Last active: Jul 3, 2014
1 msg
ChenChun help: different p-values from z-statistic and anova in coxme Jul 3, 2014

Chiara Gambi

Last active: Jul 30, 2014
2 msgs
Chiara Gambi lme4.0 vs. lme4 version 1.1-7: newer version returns inflated SE using glmer() with bobyqa optimizer Jul 30, 2014 Chiara Gambi lme4.0 vs. lme4 version 1.1-7: newer version returns inflated SE using glmer() with bobyqa optimizer Jul 30, 2014

Christian Brauner

Last active: Jul 25, 2014
5 msgs
Christian Brauner How is the covariance factor computed? Jul 17, 2014 Christian Brauner How is the covariance factor computed? Jul 18, 2014 Christian Brauner How is the covariance factor computed? Jul 19, 2014 Christian Brauner Install flexlambda- and master-lme4 from Github Jul 23, 2014 Christian Brauner Install flexlambda- and master-lme4 from Github Jul 25, 2014

Clelia Gasparini

Last active: Jul 23, 2014
1 msg
Clelia Gasparini glmer z values binomial data Jul 23, 2014

Céline Teplitsky

Last active: Jul 11, 2014
1 msg
Céline Teplitsky No residual variance using MCMCglmm Jul 11, 2014

Daniel Fulop

Last active: Jul 11, 2014
1 msg
Daniel Fulop Help with pdMat constructors in nlme Jul 11, 2014

David Duffy

Last active: Jul 21, 2014
1 msg
David Duffy lmer Control Parameters Question Jul 21, 2014

David Federer

Last active: Jul 3, 2014
2 msgs
David Federer Error in lme4 package Jul 3, 2014 David Federer Error in lme4 package Jul 3, 2014

Douglas Bates

Last active: Jul 21, 2014
1 msg
Douglas Bates lmer Control Parameters Question Jul 21, 2014

Farrar, David

Last active: Jul 29, 2014
1 msg
Farrar, David Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 29, 2014

Francisco Rodriguez Sanchez

Last active: Jul 17, 2014
1 msg
Francisco Rodriguez Sanchez Checking modeling assumptions in a binomial GLMM Jul 17, 2014

Hebert, Issac (MNR)

Last active: Jul 7, 2014
1 msg
Hebert, Issac (MNR) gls function - goodness of fit Jul 7, 2014

Henrik Singmann

Last active: Jul 10, 2014
1 msg
Henrik Singmann visualising interaction with predict.merMod Jul 10, 2014

Highland Statistics Ltd

Last active: Jul 16, 2014
2 msgs
Highland Statistics Ltd Using glmm for penalised spline model Jul 4, 2014 Highland Statistics Ltd New book: Beginner's Guide to GAMM with R Jul 16, 2014

Inga Schwabe

Last active: Jul 17, 2014
2 msgs
Inga Schwabe Question regarding the estimation of the correlation between random intercepts and random slopes in the lme4 package Jul 16, 2014 Inga Schwabe Question regarding the estimation of the correlation between random intercepts and random slopes in the lme4 package Jul 17, 2014

Jake Westfall

Last active: Jul 16, 2014
2 msgs
Jake Westfall Very important question regarding the error while using library(lme4) Jul 16, 2014 Jake Westfall Question regarding the estimation of the correlation between random intercepts and random slopes in the lme4 package Jul 16, 2014

Jarrod Hadfield

Last active: Jul 31, 2014
10 msgs
Jarrod Hadfield No residual variance using MCMCglmm Jul 11, 2014 Jarrod Hadfield No residual variance using MCMCglmm Jul 11, 2014 Jarrod Hadfield Accuracy of Va estimates using univariate versus multivariate animal model Jul 17, 2014 Jarrod Hadfield Cbind and taxa rows trouble in MCMCglmm Jul 26, 2014 Jarrod Hadfield MCMCglmm prior specification Jul 26, 2014 Jarrod Hadfield MCMCglmm predict function output and interpretation Jul 28, 2014 Jarrod Hadfield Looking for an effect of relatedness in non-normal data (MCMCglmm) Jul 28, 2014 Jarrod Hadfield MCMCglmm predict function output and interpretation Jul 29, 2014 Jarrod Hadfield MCMCglmm predict function output and interpretation Jul 29, 2014 Jarrod Hadfield Random effect on only one of the response variables in bivariate LMM (MCMCglmm) Jul 31, 2014

Jeff Newmiller

Last active: Jul 28, 2014
1 msg
Jeff Newmiller Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 28, 2014

Joel Chan

Last active: Jul 1, 2014
1 msg
Joel Chan LRT on fixed-effects (Mat?as Mu?oz) Jul 1, 2014

Joshua Wiley

Last active: Jul 17, 2014
2 msgs
Joshua Wiley Same variable as both fixed and random Jul 17, 2014 Joshua Wiley Same variable as both fixed and random Jul 17, 2014

Julia Sommerfeld

Last active: Jul 17, 2014
4 msgs
Julia Sommerfeld How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 15, 2014 Julia Sommerfeld How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 15, 2014 Julia Sommerfeld How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 15, 2014 Julia Sommerfeld How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 17, 2014

Justine

Last active: Jul 28, 2014
1 msg
Justine MCMCglmm predict function output and interpretation Jul 28, 2014

Justine Smith

Last active: Jul 29, 2014
3 msgs
Justine Smith MCMCglmm predict function output and interpretation Jul 27, 2014 Justine Smith MCMCglmm predict function output and interpretation Jul 29, 2014 Justine Smith MCMCglmm predict function output and interpretation Jul 29, 2014

Leithen

Last active: Jul 21, 2014
1 msg
Leithen question about lme4 Jul 21, 2014

Lenth, Russell V

Last active: Jul 30, 2014
4 msgs
Lenth, Russell V visualising interaction with predict.merMod Jul 12, 2014 Lenth, Russell V Mixed-effects Model - LMER - Plot of estimated Mean and CI Jul 23, 2014 Lenth, Russell V Mixed-effects Model - LMER - Plot of estimated Mean and CI Jul 23, 2014 Lenth, Russell V Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 30, 2014

Linus Holtermann

Last active: Jul 4, 2014
1 msg
Linus Holtermann Using glmm for penalised spline model Jul 4, 2014

Lionel

Last active: Jul 30, 2014
1 msg
Lionel Pseudoreplication in a factorial GLM with a proportional response variable and categorical predictor variables Jul 30, 2014

Marco Plebani

Last active: Jul 28, 2014
2 msgs
Marco Plebani Mixed effect models for a study with no (real) replication Jul 22, 2014 Marco Plebani Mixed effect models for a study with no (real) replication Jul 28, 2014

Mark Lai

Last active: Jul 21, 2014
1 msg
Mark Lai Question on semiparametric bootstrap in lme4 Jul 21, 2014

Martina Carrete

Last active: Jul 24, 2014
1 msg
Martina Carrete MCMCglmm question: multivariate model Jul 24, 2014

Matías Muñoz

Last active: Jun 30, 2014
1 msg
Matías Muñoz LRT on fixed-effects Jun 30, 2014

Megan Bartlett

Last active: Jul 27, 2014
1 msg
Megan Bartlett Looking for an effect of relatedness in non-normal data (MCMCglmm) Jul 27, 2014

Nicholas Burgoyne

Last active: Jul 30, 2014
2 msgs
Nicholas Burgoyne lme and lmer Jul 30, 2014 Nicholas Burgoyne lme and lmer Jul 30, 2014

Nicholas Lange

Last active: Jul 13, 2014
2 msgs
Nicholas Lange gamm4 model fit error Jul 13, 2014 Nicholas Lange gamm4 model fit error Jul 13, 2014

Nick Clark

Last active: Jul 25, 2014
1 msg
Nick Clark Cbind and taxa rows trouble in MCMCglmm Jul 25, 2014

Nick Lange

Last active: Jul 14, 2014
1 msg
Nick Lange gamm4: extract the (x,y) values of the plotted smooth Jul 14, 2014

Nicolas Rode

Last active: Jul 30, 2014
2 msgs
Nicolas Rode Random effect on only one of the response variables in bivariate LMM (MCMCglmm) Jul 30, 2014 Nicolas Rode Random effect on only one of the response variables in bivariate LMM (MCMCglmm) Jul 30, 2014

Nimrod Rubinstein

Last active: Jul 5, 2014
1 msg
Nimrod Rubinstein Getting the error message: Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate when trying to fit glmer to my data Jul 5, 2014

ONKELINX, Thierry

Last active: Jul 22, 2014
5 msgs
ONKELINX, Thierry How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 15, 2014 ONKELINX, Thierry How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 15, 2014 ONKELINX, Thierry How to deal with Hessian error if the model only contains binomial (0, 1) fixed factors? Jul 16, 2014 ONKELINX, Thierry Same variable as both fixed and random Jul 17, 2014 ONKELINX, Thierry Mixed effect models for a study with no (real) replication Jul 22, 2014

Ofer Agai

Last active: Jul 23, 2014
1 msg
Ofer Agai Mixed-effects Model - LMER - Plot of estimated Mean and CI Jul 23, 2014

Rajibul Mian

Last active: Jul 15, 2014
1 msg
Rajibul Mian glmmADMB package Jul 15, 2014

Ravi Varadhan

Last active: Jul 23, 2014
4 msgs
Ravi Varadhan Checking modeling assumptions in a binomial GLMM Jul 14, 2014 Ravi Varadhan Checking modeling assumptions in a binomial GLMM Jul 17, 2014 Ravi Varadhan Error in Profile likelihood based confidence intervals in glmer() Jul 22, 2014 Ravi Varadhan Providing starting values for glmer() Jul 23, 2014

Reuben Smit

Last active: Jul 31, 2014
3 msgs
Reuben Smit Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 28, 2014 Reuben Smit Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 30, 2014 Reuben Smit Calculating upper and lower confidence limits on a population estimate derived from multiple point estimates Jul 31, 2014

Richard Zijdeman

Last active: Jul 13, 2014
2 msgs
Richard Zijdeman visualising interaction with predict.merMod Jul 10, 2014 Richard Zijdeman visualising interaction with predict.merMod Jul 13, 2014

Richman, Ronald

Last active: Jul 4, 2014
1 msg
Richman, Ronald Using glmm for penalised spline model Jul 4, 2014

S Ellison

Last active: Jul 30, 2014
1 msg
S Ellison lme and lmer Jul 30, 2014

Stephane Chantepie

Last active: Jul 17, 2014
1 msg
Stephane Chantepie Accuracy of Va estimates using univariate versus multivariate animal model Jul 17, 2014

Stephen Mayor

Last active: Jul 15, 2014
1 msg
Stephen Mayor Same variable as both fixed and random Jul 15, 2014

Steve Denham

Last active: Jul 16, 2014
2 msgs
Steve Denham Very important question regarding the error while using library(lme4) Jul 15, 2014 Steve Denham Very important question regarding the error while using library(lme4) Jul 16, 2014

Tanya Pennell

Last active: Jul 23, 2014
1 msg
Tanya Pennell MCMCglmm prior specification Jul 23, 2014

Tobias Heed

Last active: Jul 23, 2014
2 msgs
Tobias Heed LRT on fixed-effects Jul 1, 2014 Tobias Heed Install flexlambda- and master-lme4 from Github Jul 23, 2014

Ulf Mertens

Last active: Jul 2, 2014
1 msg
Ulf Mertens Manipulating Compound Symmetry Jul 2, 2014

Viechtbauer Wolfgang (STAT)

Last active: Jul 30, 2014
1 msg
Viechtbauer Wolfgang (STAT) lme and lmer Jul 30, 2014

Vincent Dorie

Last active: Jul 17, 2014
2 msgs
Vincent Dorie How is the covariance factor computed? Jul 17, 2014 Vincent Dorie How is the covariance factor computed? Jul 17, 2014

Yuki Fujita

Last active: Jul 31, 2014
1 msg
Yuki Fujita Testing goodness of fit for GLMM model Jul 31, 2014

bob martin

Last active: Jul 4, 2014
1 msg
bob martin glmer convergence warning Jul 4, 2014

espesser

Last active: Jul 25, 2014
1 msg
espesser longitudinal analysis covariance or mixed model approach Jul 25, 2014

geetha venkatesh

Last active: Jul 27, 2014
1 msg
geetha venkatesh How to check if the interaction term is significant? Jul 27, 2014

steve.walker at utoronto.ca

Last active: Jul 17, 2014
1 msg
steve.walker at utoronto.ca How is the covariance factor computed? Jul 17, 2014

yuki fujita

Last active: Jul 31, 2014
1 msg
yuki fujita Goodness of fit test for GLMM Jul 31, 2014