R-SIG-mixed-models August 2014

Analysing data with an ordinal response

1 msg Aug 30

C

Christian Brauner Analysing data with an ordinal response Aug 30, 2014

help on choosin right model for data

2 msgs Aug 29

J

Josipa Perković help on choosin right model for data Aug 22, 2014

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Ben Bolker help on choosin right model for data Aug 29, 2014

Random effects in clmm() of package ordinal

3 msgs Aug 29

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Malcolm Fairbrother Random effects in clmm() of package ordinal Aug 29, 2014

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Christian Brauner Random effects in clmm() of package ordinal Aug 29, 2014

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Jarrod Hadfield Random effects in clmm() of package ordinal Aug 29, 2014

R-sig-mixed-models Digest, Vol 92, Issue 45

2 msgs Aug 29

C

Corey Sparks R-sig-mixed-models Digest, Vol 92, Issue 45 Aug 29, 2014

C

Corey Sparks multilevel analysis with sample weighted data Aug 29, 2014

Random effects in clmm() of package ordinal

2 msgs Aug 29

C

Christian Brauner Random effects in clmm() of package ordinal Aug 29, 2014

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Ben Bolker Random effects in clmm() of package ordinal Aug 29, 2014

parallel MCMCglmm, RNGstreams, starting values & priors

15 msgs Aug 29

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 26, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 27, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 27, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 28, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 28, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 28, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 28, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 28, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 29, 2014

multilevel analysis with sample weighted data

3 msgs Aug 29

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Rodrigo Travitzki multilevel analysis with sample weighted data Aug 28, 2014

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Ben Bolker multilevel analysis with sample weighted data Aug 28, 2014

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Rodrigo Travitzki multilevel analysis with sample weighted data Aug 29, 2014

Binomial GLMM or GAMM with random intercept and temporal correlation

1 msg Aug 26

S

SamiC Binomial GLMM or GAMM with random intercept and temporal correlation Aug 26, 2014

parallel MCMCglmm execution

6 msgs Aug 25

R

Ruben Arslan parallel MCMCglmm execution Aug 4, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

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Ruben Arslan parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

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Jarrod Hadfield parallel MCMCglmm, RNGstreams, starting values & priors Aug 25, 2014

How to fix the value of random intercepts (lmer/MCMCglmm)

6 msgs Aug 25

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PATRICK, Samantha How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

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Jarrod Hadfield How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

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PATRICK, Samantha How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

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Jarrod Hadfield How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

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Ben Bolker How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

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Steve Walker How to fix the value of random intercepts (lmer/MCMCglmm) Aug 25, 2014

glmer

1 msg Aug 22

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PLUQUET Thibault glmer Aug 22, 2014

RE : Generalized mixed effects models

1 msg Aug 22

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Douglas Bates RE : Generalized mixed effects models Aug 22, 2014

Deviance residuals don't sum up to deviance

5 msgs Aug 22

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Roelof Coster Deviance residuals don't sum up to deviance Aug 22, 2014

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Martin Maechler Deviance residuals don't sum up to deviance Aug 22, 2014

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Roelof Coster Deviance residuals don't sum up to deviance Aug 22, 2014

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Steve Walker Deviance residuals don't sum up to deviance Aug 22, 2014

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Steve Walker Deviance residuals don't sum up to deviance Aug 22, 2014

Trivariate MCMCglmm

2 msgs Aug 21

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Matthew Wolak Trivariate MCMCglmm Aug 20, 2014

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Gemma Palomar García Trivariate MCMCglmm Aug 21, 2014

question about lme4 and nlme

1 msg Aug 21

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Niu, Mu question about lme4 and nlme Aug 21, 2014

Mixed model for ordinal data with pseudo replication

1 msg Aug 21

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Mehdi Abedi Mixed model for ordinal data with pseudo replication Aug 21, 2014

GlMM for ordinal and pseudo replication

1 msg Aug 20

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Ben Bolker GlMM for ordinal and pseudo replication Aug 20, 2014

Getting intraclass correlations from a binomial mixed model with logit link

1 msg Aug 20

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Jake Westfall Getting intraclass correlations from a binomial mixed model with logit link Aug 20, 2014

(no subject)

2 msgs Aug 20

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Richa Bharti (no subject) Aug 18, 2014

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Ben Bolker (no subject) Aug 20, 2014

Getting intraclass correlations from a binomial mixed model with logit link

2 msgs Aug 20

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Ulf Köther Getting intraclass correlations from a binomial mixed model with logit link Aug 20, 2014

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Jake Westfall Getting intraclass correlations from a binomial mixed model with logit link Aug 20, 2014

[Lme4-authors] installing 1.1-7

1 msg Aug 20

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Ben Bolker installing 1.1-7 Aug 20, 2014

Model tree with random effects

1 msg Aug 20

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Roelof Coster Model tree with random effects Aug 20, 2014

Trivariate MCMCglmm

2 msgs Aug 20

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Gemma Palomar García Trivariate MCMCglmm Aug 19, 2014

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Matthew Wolak Trivariate MCMCglmm Aug 20, 2014

Specifying a repeated-measure design with 3 fully crossed within-subject factors

2 msgs Aug 19

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Michael Cone Specifying a repeated-measure design with 3 fully crossed within-subject factors Aug 11, 2014

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Michael Cone Specifying a repeated-measure design with 3 fully crossed within-subject factors Aug 19, 2014

Random effect variance = zero

1 msg Aug 19

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Marco Plebani Random effect variance = zero Aug 19, 2014

looking for differencies in G structure among factor levels using MCMCglmm

1 msg Aug 18

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Diego looking for differencies in G structure among factor levels using MCMCglmm Aug 18, 2014

bootMer: 2 questions about generating standard errors in lme4

3 msgs Aug 18

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Jeffrey Evans bootMer: 2 questions about generating standard errors in lme4 Aug 15, 2014

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Ben Bolker bootMer: 2 questions about generating standard errors in lme4 Aug 15, 2014

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Jeffrey Evans bootMer: 2 questions about generating standard errors in lme4 Aug 18, 2014

discrepency paired test and lmer()

2 msgs Aug 18

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E.W.Tobi at lumc.nl discrepency paired test and lmer() Aug 18, 2014

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iwhite@staffmail.ed.ac.uk discrepency paired test and lmer() Aug 18, 2014

lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1)

3 msgs Aug 17

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florian k. lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1) Aug 16, 2014

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Ben Bolker lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1) Aug 16, 2014

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florian k. lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1) Aug 17, 2014

lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1)

1 msg Aug 15

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florian k. lqmm - package: Error in f(arg, …) : NA/NaN/Inf in foreign function call (arg 1) Aug 15, 2014

Random effect variance = zero

5 msgs Aug 15

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Marco Plebani Random effect variance = zero Aug 14, 2014

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Douglas Bates Random effect variance = zero Aug 14, 2014

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Ben Bolker Random effect variance = zero Aug 14, 2014

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Ben Bolker Random effect variance = zero Aug 14, 2014

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John Maindonald Random effect variance = zero Aug 15, 2014

lmer random and fixed effect?

4 msgs Aug 14

C

Charles Determan Jr lmer random and fixed effect? Aug 14, 2014

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Farrar, David lmer random and fixed effect? Aug 14, 2014

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Ben Bolker lmer random and fixed effect? Aug 14, 2014

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Farrar, David lmer random and fixed effect? Aug 14, 2014

random vs fixed effects and glmer model simplification

1 msg Aug 14

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Malcolm Fairbrother random vs fixed effects and glmer model simplification Aug 14, 2014

random vs fixed effects and glmer model simplification

1 msg Aug 14

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Saoirse Preston random vs fixed effects and glmer model simplification Aug 14, 2014

"bootstrap runs failed" in bootMer within confint.merMod

1 msg Aug 14

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Paul Johnson "bootstrap runs failed" in bootMer within confint.merMod Aug 14, 2014

PredictSE.mer error message

2 msgs Aug 13

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yuki fujita PredictSE.mer error message Aug 13, 2014

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Jake Westfall PredictSE.mer error message Aug 13, 2014

Multivariate multinomial in MCMCglmm

2 msgs Aug 13

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Szymek Drobniak Multivariate multinomial in MCMCglmm Aug 13, 2014

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Jarrod Hadfield Multivariate multinomial in MCMCglmm Aug 13, 2014

Bivariate MCMCglmm with repeated measures

4 msgs Aug 13

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PATRICK, Samantha Bivariate MCMCglmm with repeated measures Aug 11, 2014

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Jarrod Hadfield Bivariate MCMCglmm with repeated measures Aug 11, 2014

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PATRICK, Samantha Bivariate MCMCglmm with repeated measures Aug 13, 2014

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Jarrod Hadfield Bivariate MCMCglmm with repeated measures Aug 13, 2014

confidence intervals for random slopes

4 msgs Aug 13

B

Bokony Veronika confidence intervals for random slopes Aug 10, 2014

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Lionel confidence intervals for random slopes Aug 11, 2014

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Ben Bolker confidence intervals for random slopes Aug 11, 2014

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Veronika Bokony confidence intervals for random slopes Aug 13, 2014

Random effect variance = zero

3 msgs Aug 13

A

Aurore Paligot Random effect variance = zero Aug 12, 2014

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Ben Bolker Random effect variance = zero Aug 12, 2014

A

Aurore Paligot Random effect variance = zero Aug 13, 2014

Random slope/intercept without correlation in lmer

6 msgs Aug 12

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Gustaf Granath Random slope/intercept without correlation in lmer Aug 11, 2014

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Ben Bolker Random slope/intercept without correlation in lmer Aug 11, 2014

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Steve Walker Random slope/intercept without correlation in lmer Aug 11, 2014

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Gustaf Granath Random slope/intercept without correlation in lmer Aug 12, 2014

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Jake Westfall Random slope/intercept without correlation in lmer Aug 12, 2014

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Ben Bolker Random slope/intercept without correlation in lmer Aug 12, 2014

confidence intervals for random slopes

1 msg Aug 11

L

Lenth, Russell V confidence intervals for random slopes Aug 11, 2014

using Poisson glmer for non-integer data

1 msg Aug 10

B

Ben Bolker using Poisson glmer for non-integer data Aug 10, 2014

Group size in mixed/multilevel model: How to obtain weighted effects.

4 msgs Aug 10

H

Henrik Singmann Group size in mixed/multilevel model: How to obtain weighted effects. Aug 9, 2014

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Jake Westfall Group size in mixed/multilevel model: How to obtain weighted effects. Aug 9, 2014

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Henrik Singmann Group size in mixed/multilevel model: How to obtain weighted effects. Aug 10, 2014

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Jake Westfall Group size in mixed/multilevel model: How to obtain weighted effects. Aug 10, 2014

Non-conformable arguments while predicting with glmmadmb_model

2 msgs Aug 8

R

Reuben Smit Non-conformable arguments while predicting with glmmadmb_model Aug 8, 2014

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Ben Bolker Non-conformable arguments while predicting with glmmadmb_model Aug 8, 2014

Model diagnostics for a glmmadmb negative binomial

2 msgs Aug 7

R

Reuben Smit Model diagnostics for a glmmadmb negative binomial Aug 6, 2014

B

Ben Bolker Model diagnostics for a glmmadmb negative binomial Aug 7, 2014

tolPwrss threshold

2 msgs Aug 7

Z

Zofia Ecaterina Taranu tolPwrss threshold Aug 7, 2014

B

Ben Bolker tolPwrss threshold Aug 7, 2014

Summary of Subgroups

3 msgs Aug 7

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Shankar Lanke Summary of Subgroups Aug 7, 2014

B

Ben Bolker Summary of Subgroups Aug 7, 2014

C

Chris Howden Summary of Subgroups Aug 7, 2014

lmer not working

4 msgs Aug 7

G

Georgina Brennan lmer not working Aug 6, 2014

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ONKELINX, Thierry lmer not working Aug 6, 2014

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Steve Walker lmer not working Aug 6, 2014

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Georgina Brennan lmer not working Aug 7, 2014

autocorrelated errors

3 msgs Aug 6

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Paul Johnson autocorrelated errors Aug 5, 2014

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Steve Walker autocorrelated errors Aug 6, 2014

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Paul Johnson autocorrelated errors Aug 6, 2014

lmer not working

1 msg Aug 6

O

ONKELINX, Thierry lmer not working Aug 6, 2014

discrepency with paired test when adding concordant paired data to lmer()

1 msg Aug 6

E

E.W.Tobi at lumc.nl discrepency with paired test when adding concordant paired data to lmer() Aug 6, 2014

R-sig-mixed-models Digest, Vol 92, Issue 6

1 msg Aug 6

M

Malcolm Fairbrother R-sig-mixed-models Digest, Vol 92, Issue 6 Aug 6, 2014

Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate

3 msgs Aug 5

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Kirsty McLaughlin Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate Aug 5, 2014

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Kirsty McLaughlin Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate Aug 5, 2014

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Ben Bolker Error: (maxstephalfit) PIRLS step-halvings failed to reduce deviance in pwrssUpdate Aug 5, 2014

Looking for differences in G structure among factor levels

1 msg Aug 4

D

Diego Looking for differences in G structure among factor levels Aug 4, 2014

Weighting observations by sampling size in lmer

1 msg Aug 4

J

Javan Bauder Weighting observations by sampling size in lmer Aug 4, 2014

Random slopes for logistic mixed effects model; BoxCox transformation

2 msgs Aug 4

Y

Yasuaki SHINOHARA Random slopes for logistic mixed effects model; BoxCox transformation Aug 3, 2014

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ONKELINX, Thierry Random slopes for logistic mixed effects model; BoxCox transformation Aug 4, 2014

Standard errors in generalised linear mixed models?

1 msg Aug 2

B

Ben Bolker Standard errors in generalised linear mixed models? Aug 2, 2014

Testing goodness of fit for GLMM model

1 msg Aug 2

B

Ben Bolker Testing goodness of fit for GLMM model Aug 2, 2014

Standard errors in generalised linear mixed models?

1 msg Aug 2

F

Felix Suessenbach Standard errors in generalised linear mixed models? Aug 2, 2014

lme4 vs nlme

2 msgs Aug 1

N

Nicholas Burgoyne lme4 vs nlme Aug 1, 2014

J

Jake Westfall lme4 vs nlme Aug 1, 2014

Goodness of fit test for GLMM

1 msg Jul 31

C

Chris Howden Goodness of fit test for GLMM Jul 31, 2014