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R-SIG-mixed-models October 2014

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How to calculate the level-1 variance of a GLMM (Poisson or Additive Over-dispersed Poisson) model?
2 msgs
Graham B. McNamara How to calculate the level-1 variance of a GLMM (Poisson or Additive Over-dispersed Poisson) model? Oct 31, 2014
Ulf Köther How to calculate the level-1 variance of a GLMM (Poisson or Additive Over-dispersed Poisson) model? Oct 31, 2014
nlme : how to obtain confidence intervals of fitted values
2 msgs
Laura Riggi nlme : how to obtain confidence intervals of fitted values Oct 31, 2014
Ben Bolker nlme : how to obtain confidence intervals of fitted values Oct 31, 2014
Follow up question testing three way interaction between two fixed effects and a random effect nested in a fixed
2 msgs
Eoin Duffy Follow up question testing three way interaction between two fixed effects and a random effect nested in a fixed Oct 30, 2014
ONKELINX, Thierry Follow up question testing three way interaction between two fixed effects and a random effect nested in a fixed Oct 31, 2014
"Multilevel Modeling Using R" and variance estimates
4 msgs
Douglas Bates "Multilevel Modeling Using R" and variance estimates Oct 30, 2014
Marko Bachl "Multilevel Modeling Using R" and variance estimates Oct 30, 2014
Ben Bolker "Multilevel Modeling Using R" and variance estimates Oct 30, 2014
Douglas Bates "Multilevel Modeling Using R" and variance estimates Oct 30, 2014
Testing interaction between fixed effect and random effect nested within another random effect
2 msgs
Eoin Duffy Testing interaction between fixed effect and random effect nested within another random effect Oct 28, 2014
ONKELINX, Thierry Testing interaction between fixed effect and random effect nested within another random effect Oct 30, 2014
Ordinal categorical variable as a random effect in MCMCglmm
1 msg
Manabu Sakamoto Ordinal categorical variable as a random effect in MCMCglmm Oct 29, 2014
Binomial model R^2 and ICC calculation with lme4
2 msgs
Maurits Van Zinnicq Bergmann Binomial model R^2 and ICC calculation with lme4 Oct 23, 2014
Paul Johnson Binomial model R^2 and ICC calculation with lme4 Oct 28, 2014
nlme predict
2 msgs
Vasco Cadavez nlme predict Oct 27, 2014
Roman Luštrik nlme predict Oct 28, 2014
lmer model converged before, but couldn't now
2 msgs
Zhaohong Wu lmer model converged before, but couldn't now Oct 27, 2014
Ben Bolker lmer model converged before, but couldn't now Oct 27, 2014
parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow
2 msgs
Spronken, M. (Maitta) parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow Oct 27, 2014
Henrik Singmann parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow Oct 27, 2014
Estimating indirect contributions in a mixed-treatment comparison (a.k.a. network meta-analysis)
1 msg
Jouve, Thomas Estimating indirect contributions in a mixed-treatment comparison (a.k.a. network meta-analysis) Oct 27, 2014
Help request - MCMCglmm model with repeat measures and phylogenetic component
1 msg
Tricia Markle Help request - MCMCglmm model with repeat measures and phylogenetic component Oct 26, 2014
Estimation Methods in lme4
2 msgs
Mohd Masood Estimation Methods in lme4 Oct 25, 2014
Ben Bolker Estimation Methods in lme4 Oct 25, 2014
lme4
1 msg
Ben Bolker lme4 Oct 23, 2014
Error message
3 msgs
Luciano La Sala Error message Oct 22, 2014
Daniel Wright Error message Oct 22, 2014
Ben Bolker Error message Oct 22, 2014
parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow
1 msg
Spronken, M. (Maitta) parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow Oct 22, 2014
Binomial model variance and repeatability estimates with MCMCglmm
4 msgs
Ned Dochtermann Binomial model variance and repeatability estimates with MCMCglmm Oct 21, 2014
Jarrod Hadfield Binomial model variance and repeatability estimates with MCMCglmm Oct 21, 2014
Ned Dochtermann Binomial model variance and repeatability estimates with MCMCglmm Oct 21, 2014
Jarrod Hadfield Binomial model variance and repeatability estimates with MCMCglmm Oct 21, 2014
MCMC fitting in glmmADMB
4 msgs
- - MCMC fitting in glmmADMB Oct 16, 2014
Ben Bolker MCMC fitting in glmmADMB Oct 18, 2014
- - MCMC fitting in glmmADMB Oct 20, 2014
- - MCMC fitting in glmmADMB Oct 21, 2014
parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow
2 msgs
Spronken, M. (Maitta) parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow Oct 21, 2014
Ben Bolker parallel option of the bootMer function: warnings for parallel=no, but not for parallel=snow Oct 21, 2014
Convergence warnings in lme4
2 msgs
adam.hayward at ed.ac.uk Convergence warnings in lme4 Oct 21, 2014
Ben Bolker Convergence warnings in lme4 Oct 21, 2014
Modeling variance heterogeneity in lme4 + meaning of VarCorr values
4 msgs
Emmanuel Curis Modeling variance heterogeneity in lme4 + meaning of VarCorr values Oct 20, 2014
ONKELINX, Thierry Modeling variance heterogeneity in lme4 + meaning of VarCorr values Oct 20, 2014
Emmanuel Curis Modeling variance heterogeneity in lme4 + meaning of VarCorr values Oct 20, 2014
ONKELINX, Thierry Modeling variance heterogeneity in lme4 + meaning of VarCorr values Oct 21, 2014
MCMCglmm prior distributions
9 msgs
Boby Mathew MCMCglmm prior distributions Oct 16, 2014
Jarrod Hadfield MCMCglmm prior distributions Oct 16, 2014
Boby Mathew MCMCglmm prior distributions Oct 20, 2014
Jarrod Hadfield MCMCglmm prior distributions Oct 20, 2014
Boby Mathew MCMCglmm prior distributions Oct 20, 2014
Jarrod Hadfield MCMCglmm prior distributions Oct 20, 2014
Boby Mathew MCMCglmm prior distributions Oct 20, 2014
Jarrod Hadfield MCMCglmm prior distributions Oct 20, 2014
Boby Mathew MCMCglmm prior distributions Oct 20, 2014
lme4
2 msgs
Ebi Safaie lme4 Oct 16, 2014
Ben Bolker lme4 Oct 18, 2014
Survey weights. Suggestions?
2 msgs
Paul Johnson Survey weights. Suggestions? Oct 17, 2014
Robert Long Survey weights. Suggestions? Oct 17, 2014
Extract standard error of the variance component in lme4 package (GLMM).
12 msgs
Martí Casals Extract standard error of the variance component in lme4 package (GLMM). Oct 15, 2014
Ben Pelzer comparing posterior means Oct 15, 2014
Steve Walker Extract standard error of the variance component in lme4 package (GLMM). Oct 15, 2014
Ben Bolker Extract standard error of the variance component in lme4 package (GLMM). Oct 15, 2014
Emmanuel Curis comparing posterior means Oct 15, 2014
Doran, Harold comparing posterior means Oct 15, 2014
Douglas Bates comparing posterior means Oct 15, 2014
Doran, Harold comparing posterior means Oct 15, 2014
Douglas Bates comparing posterior means Oct 15, 2014
Ben Pelzer comparing posterior means Oct 15, 2014
Jake Westfall comparing posterior means Oct 15, 2014
Martí Casals Extract standard error of the variance component in lme4 package (GLMM). Oct 17, 2014
Julia vs nlme vs lme4 implementation of fitting linear mixed models
7 msgs
Robert Long Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Phillip Alday Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Robert Long Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Phillip Alday Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Robert Long Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Douglas Bates Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 16, 2014
Robert Long Julia vs nlme vs lme4 implementation of fitting linear mixed models Oct 17, 2014
lme4 (your singularity check with getME())
1 msg
Ben Bolker lme4 (your singularity check with getME()) Oct 16, 2014
MCMCglmm
1 msg
Tanya Pennell MCMCglmm Oct 16, 2014
lme4
1 msg
Ben Bolker lme4 Oct 15, 2014
confidence intervals for random slopes
1 msg
Ben Bolker confidence intervals for random slopes Oct 15, 2014
MCMCglmm user defined incidence matrix
2 msgs
Boby Mathew MCMCglmm user defined incidence matrix Oct 14, 2014
Jarrod Hadfield MCMCglmm user defined incidence matrix Oct 15, 2014
lme4
1 msg
Safaie, Ebrahim lme4 Oct 15, 2014
Problem with bootMer and models with offset
6 msgs
Martin Hecht Problem with bootMer and models with offset Oct 13, 2014
Ben Bolker Problem with bootMer and models with offset Oct 13, 2014
Martin Hecht Problem with bootMer and models with offset Oct 14, 2014
Martin Hecht Problem with bootMer and models with offset Oct 14, 2014
Ben Bolker Problem with bootMer and models with offset Oct 14, 2014
Martin Hecht Problem with bootMer and models with offset Oct 14, 2014
Extracting weights from an lme object
1 msg
robert bagchi Extracting weights from an lme object Oct 14, 2014
lme4 heteroscedasticity???
1 msg
Highland Statistics Ltd lme4 heteroscedasticity??? Oct 14, 2014
Extracting weights from an lme object
2 msgs
robert bagchi Extracting weights from an lme object Oct 10, 2014
Ben Bolker Extracting weights from an lme object Oct 13, 2014
lme4 heteroscedasticity???
5 msgs
Douglas Bates lme4 heteroscedasticity??? Oct 13, 2014
Paul Johnson lme4 heteroscedasticity??? Oct 13, 2014
Douglas Bates lme4 heteroscedasticity??? Oct 13, 2014
Paul Johnson lme4 heteroscedasticity??? Oct 13, 2014
Ben Bolker lme4 heteroscedasticity??? Oct 13, 2014
varFixed function query in lme
2 msgs
Douglas Bates varFixed function query in lme Oct 13, 2014
Ben Bolker varFixed function query in lme Oct 13, 2014
Announcing new version of afex (0.11-131)
1 msg
Henrik Singmann Announcing new version of afex (0.11-131) Oct 13, 2014
singular convergence warning
2 msgs
Price, Emily singular convergence warning Oct 12, 2014
Roman Luštrik singular convergence warning Oct 13, 2014
gamm4: predict to reflect random effects?
2 msgs
Mollie Brooks gamm4: predict to reflect random effects? Oct 10, 2014
Mark Miller gamm4: predict to reflect random effects? Oct 12, 2014
When to use random slop models
1 msg
Mohd Masood When to use random slop models Oct 10, 2014
Effect size for lmer and glmer
1 msg
Highland Statistics Ltd Effect size for lmer and glmer Oct 9, 2014
mixed zero-inflated Poisson regression model (Dieter Anseeuw)
1 msg
Highland Statistics Ltd mixed zero-inflated Poisson regression model (Dieter Anseeuw) Oct 9, 2014
mixed zero-inflated Poisson regression model
2 msgs
Dieter Anseeuw mixed zero-inflated Poisson regression model Oct 8, 2014
ONKELINX, Thierry mixed zero-inflated Poisson regression model Oct 9, 2014
Effect size for lmer and glmer
1 msg
Hamada Elsayed Ali Effect size for lmer and glmer Oct 8, 2014
interpretation of covariate effect on traits in multinomial mixed model (MCMCglmm)
1 msg
Dominique CARVAL interpretation of covariate effect on traits in multinomial mixed model (MCMCglmm) Oct 7, 2014
correlation of random factors in mixed models
2 msgs
Luis Cayuela Delgado correlation of random factors in mixed models Oct 6, 2014
Ken Beath correlation of random factors in mixed models Oct 7, 2014
Model comparisons
5 msgs
Yasuaki SHINOHARA Model comparisons Oct 2, 2014
ONKELINX, Thierry Model comparisons Oct 3, 2014
Yasuaki SHINOHARA Model comparisons Oct 4, 2014
ONKELINX, Thierry Model comparisons Oct 6, 2014
Yasuaki SHINOHARA Model comparisons Oct 7, 2014
gamm4: predict to reflect random effects?
1 msg
Mark Miller gamm4: predict to reflect random effects? Oct 6, 2014
Model selection GLM vs. GLMMs
4 msgs
Nelida Villaseñor Model selection GLM vs. GLMMs Oct 2, 2014
Ben Bolker Model selection GLM vs. GLMMs Oct 5, 2014
Ben Bolker Model selection GLM vs. GLMMs Oct 5, 2014
Douglas Bates Model selection GLM vs. GLMMs Oct 6, 2014
From: Tina Wey
1 msg
Tina Wey From: Tina Wey Oct 4, 2014
[Lme4-authors] LME4 and Lmer model
1 msg