Skip to content
Prev 8701 / 20628 Next

Extracting the posterior distribution for a random effect in MCMCglmm

Hi,

specifying pr=TRUE in the call to MCMCglmm saves the posterior  
distribution of all location effects (fixed and random). They appear  
in Sol.

summary uses HPDinterval not quantile. HPDinterval (with prob=0.95)  
finds the shortest interval which contains 95% of the posterior  
samples, which may be different from quantile which just finds the  
lowest and highest 2.5%.

Cheers,

Jarrod



Quoting Robert Long <longrob604 at gmail.com> on Mon, 6 Aug 2012 10:56:53 +0100: