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Bioc-devel September 2013

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[Bioc-devel] memory not mapped error when installing Bioc 2.13 packages on R 3.0.2
2 msgs
Nicolas Delhomme memory not mapped error when installing Bioc 2.13 packages on R 3.0.2 Sep 28, 2013
Martin Morgan memory not mapped error when installing Bioc 2.13 packages on R 3.0.2 Sep 28, 2013
[Bioc-devel] Clarifying/simplifying on the SVN-Github mirroring
5 msgs
Renaud Gaujoux Clarifying/simplifying on the SVN-Github mirroring Sep 26, 2013
Dan Tenenbaum Clarifying/simplifying on the SVN-Github mirroring Sep 26, 2013
Renaud Gaujoux Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013
Dan Tenenbaum Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013
Steve Lianoglou Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013
[Bioc-devel] expand,VCF and the AD geno field
4 msgs
Michael Lawrence expand,VCF and the AD geno field Sep 4, 2013
Valerie Obenchain expand,VCF and the AD geno field Sep 5, 2013
Valerie Obenchain expand,VCF and the AD geno field Sep 24, 2013
Michael Lawrence expand,VCF and the AD geno field Sep 24, 2013
[Bioc-devel] isActiveSeq deprecated
10 msgs
Hahne, Florian isActiveSeq deprecated Sep 13, 2013
Marc Carlson isActiveSeq deprecated Sep 13, 2013
Hahne, Florian isActiveSeq deprecated Sep 16, 2013
Hahne, Florian isActiveSeq deprecated Sep 16, 2013
Marc Carlson isActiveSeq deprecated Sep 16, 2013
Hervé Pagès isActiveSeq deprecated Sep 18, 2013
Marc Carlson isActiveSeq deprecated Sep 18, 2013
Hervé Pagès isActiveSeq deprecated Sep 18, 2013
Hahne, Florian isActiveSeq deprecated Sep 18, 2013
Hervé Pagès isActiveSeq deprecated Sep 23, 2013
[Bioc-devel] Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript
4 msgs
Michael Love Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 13, 2013
Valerie Obenchain Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013
Michael Love Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013
Hervé Pagès Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013
[Bioc-devel] deprecation of keepSeqlevels and renameSeqlevels
14 msgs
Vincent Carey deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Tim Triche, Jr. deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013
Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013
Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013
Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013
[Bioc-devel] R and Bioconductor versions for the forthcoming release
14 msgs
Martin Morgan R and Bioconductor versions for the forthcoming release Sep 16, 2013
Ramon Diaz-Uriarte R and Bioconductor versions for the forthcoming release Sep 17, 2013
Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013
Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013
Martin Morgan R and Bioconductor versions for the forthcoming release Sep 17, 2013
Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013
Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013
Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013
Ramon Diaz-Uriarte R and Bioconductor versions for the forthcoming release Sep 17, 2013
Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013
Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013
Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013
Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013
Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 18, 2013
[Bioc-devel] IRanges: 'extractROWS' fails for 'RangedData'
4 msgs
Julian Gehring IRanges: 'extractROWS' fails for 'RangedData' Sep 15, 2013
Wolfgang Huber R-version (was: IRanges: 'extractROWS' fails for 'RangedData') Sep 15, 2013
Julian Gehring IRanges: 'extractROWS' fails for 'RangedData' Sep 16, 2013
Martin Morgan R-version Sep 16, 2013
[Bioc-devel] [BioC] plot methylation figure for end analysis
1 msg
Michael Stadler plot methylation figure for end analysis Sep 16, 2013
[Bioc-devel] coercing DataFrame to data.frame
3 msgs
Hahne, Florian coercing DataFrame to data.frame Sep 13, 2013
Michael Lawrence coercing DataFrame to data.frame Sep 13, 2013
Hahne, Florian coercing DataFrame to data.frame Sep 16, 2013
[Bioc-devel] svn for annotation packages
4 msgs
Dan Tenenbaum svn for annotation packages Sep 11, 2013
Marc Carlson svn for annotation packages Sep 12, 2013
Kasper Daniel Hansen svn for annotation packages Sep 12, 2013
Marc Carlson svn for annotation packages Sep 13, 2013
[Bioc-devel] error in subsetting "ShortReadQ" object
4 msgs
Stadler, Michael error in subsetting "ShortReadQ" object Sep 12, 2013
Kasper Daniel Hansen error in subsetting "ShortReadQ" object Sep 12, 2013
Valerie Obenchain error in subsetting "ShortReadQ" object Sep 12, 2013
Stadler, Michael error in subsetting "ShortReadQ" object Sep 12, 2013
[Bioc-devel] [BioC] plot methylation figure for end analysis
1 msg
Tim Triche, Jr. plot methylation figure for end analysis Sep 12, 2013
[Bioc-devel] svn for annotation packages
1 msg
Kasper Daniel Hansen svn for annotation packages Sep 11, 2013
[Bioc-devel] [BioC] readGappedAlignments and param argument
4 msgs
Elena Grassi readGappedAlignments and param argument Sep 10, 2013
Martin Morgan readGappedAlignments and param argument Sep 10, 2013
Elena Grassi readGappedAlignments and param argument Sep 10, 2013
Martin Morgan readGappedAlignments and param argument Sep 10, 2013
[Bioc-devel] New Bioconductor package: intansv
1 msg
Wen Yao New Bioconductor package: intansv Sep 9, 2013
[Bioc-devel] New Bioconductor package: intansv
1 msg
Wen Yao New Bioconductor package: intansv Sep 7, 2013
[Bioc-devel] setdiff error (GenomicRanges)
2 msgs
Hervé Pagès setdiff error (GenomicRanges) Sep 3, 2013
Michael Stadler setdiff error (GenomicRanges) Sep 6, 2013
[Bioc-devel] How to update the data in a data package?
3 msgs
Nicolas Delhomme How to update the data in a data package? Sep 5, 2013
Laurent Gatto How to update the data in a data package? Sep 5, 2013
Nicolas Delhomme How to update the data in a data package? Sep 6, 2013
[Bioc-devel] UCSC Table Query Failing For Large Ranges
2 msgs
Dario Strbenac UCSC Table Query Failing For Large Ranges Sep 4, 2013
Michael Lawrence UCSC Table Query Failing For Large Ranges Sep 4, 2013
[Bioc-devel] 'GRangesList' does not keep metadata of items
7 msgs
Julian Gehring 'GRangesList' does not keep metadata of items Sep 2, 2013
Michael Lawrence 'GRangesList' does not keep metadata of items Sep 2, 2013
Julian Gehring 'GRangesList' does not keep metadata of items Sep 3, 2013
Michael Lawrence 'GRangesList' does not keep metadata of items Sep 3, 2013
Julian Gehring 'GRangesList' does not keep metadata of items Sep 3, 2013
Hervé Pagès 'GRangesList' does not keep metadata of items Sep 3, 2013
Hervé Pagès 'GRangesList' does not keep metadata of items Sep 3, 2013
[Bioc-devel] BiocParallel status
4 msgs
Hahne, Florian BiocParallel status Sep 3, 2013
Martin Morgan BiocParallel status Sep 3, 2013
Hahne, Florian BiocParallel status Sep 3, 2013
Michael Lawrence BiocParallel status Sep 3, 2013
[Bioc-devel] Splitting design matrix contrast pivoting logic into a separate function?
2 msgs
Gordon K Smyth Splitting design matrix contrast pivoting logic into a separate function? Sep 1, 2013
Ryan Splitting design matrix contrast pivoting logic into a separate function? Sep 1, 2013