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Bioc-devel September 2013

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Dan Tenenbaum

Last active: Sep 27, 2013
3 msgs
Dan Tenenbaum svn for annotation packages Sep 11, 2013 Dan Tenenbaum Clarifying/simplifying on the SVN-Github mirroring Sep 26, 2013 Dan Tenenbaum Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013

Dario Strbenac

Last active: Sep 4, 2013
1 msg
Dario Strbenac UCSC Table Query Failing For Large Ranges Sep 4, 2013

Elena Grassi

Last active: Sep 10, 2013
2 msgs
Elena Grassi readGappedAlignments and param argument Sep 10, 2013 Elena Grassi readGappedAlignments and param argument Sep 10, 2013

Gordon K Smyth

Last active: Sep 1, 2013
1 msg
Gordon K Smyth Splitting design matrix contrast pivoting logic into a separate function? Sep 1, 2013

Hahne, Florian

Last active: Sep 18, 2013
8 msgs
Hahne, Florian BiocParallel status Sep 3, 2013 Hahne, Florian BiocParallel status Sep 3, 2013 Hahne, Florian isActiveSeq deprecated Sep 13, 2013 Hahne, Florian coercing DataFrame to data.frame Sep 13, 2013 Hahne, Florian coercing DataFrame to data.frame Sep 16, 2013 Hahne, Florian isActiveSeq deprecated Sep 16, 2013 Hahne, Florian isActiveSeq deprecated Sep 16, 2013 Hahne, Florian isActiveSeq deprecated Sep 18, 2013

Hervé Pagès

Last active: Sep 23, 2013
12 msgs
Hervé Pagès setdiff error (GenomicRanges) Sep 3, 2013 Hervé Pagès 'GRangesList' does not keep metadata of items Sep 3, 2013 Hervé Pagès 'GRangesList' does not keep metadata of items Sep 3, 2013 Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Hervé Pagès deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013 Hervé Pagès isActiveSeq deprecated Sep 18, 2013 Hervé Pagès isActiveSeq deprecated Sep 18, 2013 Hervé Pagès Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013 Hervé Pagès isActiveSeq deprecated Sep 23, 2013

Julian Gehring

Last active: Sep 16, 2013
5 msgs
Julian Gehring 'GRangesList' does not keep metadata of items Sep 2, 2013 Julian Gehring 'GRangesList' does not keep metadata of items Sep 3, 2013 Julian Gehring 'GRangesList' does not keep metadata of items Sep 3, 2013 Julian Gehring IRanges: 'extractROWS' fails for 'RangedData' Sep 15, 2013 Julian Gehring IRanges: 'extractROWS' fails for 'RangedData' Sep 16, 2013

Kasper Daniel Hansen

Last active: Sep 18, 2013
11 msgs
Kasper Daniel Hansen svn for annotation packages Sep 11, 2013 Kasper Daniel Hansen error in subsetting "ShortReadQ" object Sep 12, 2013 Kasper Daniel Hansen svn for annotation packages Sep 12, 2013 Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013 Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013 Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013 Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 17, 2013 Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Kasper Daniel Hansen R-3.0.2 and vignettes that should not be built Sep 18, 2013 Kasper Daniel Hansen deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013

Laurent Gatto

Last active: Sep 5, 2013
1 msg
Laurent Gatto How to update the data in a data package? Sep 5, 2013

Marc Carlson

Last active: Sep 18, 2013
5 msgs
Marc Carlson svn for annotation packages Sep 12, 2013 Marc Carlson isActiveSeq deprecated Sep 13, 2013 Marc Carlson svn for annotation packages Sep 13, 2013 Marc Carlson isActiveSeq deprecated Sep 16, 2013 Marc Carlson isActiveSeq deprecated Sep 18, 2013

Martin Morgan

Last active: Sep 28, 2013
7 msgs
Martin Morgan BiocParallel status Sep 3, 2013 Martin Morgan readGappedAlignments and param argument Sep 10, 2013 Martin Morgan readGappedAlignments and param argument Sep 10, 2013 Martin Morgan R-version Sep 16, 2013 Martin Morgan R and Bioconductor versions for the forthcoming release Sep 16, 2013 Martin Morgan R and Bioconductor versions for the forthcoming release Sep 17, 2013 Martin Morgan memory not mapped error when installing Bioc 2.13 packages on R 3.0.2 Sep 28, 2013

Michael Lawrence

Last active: Sep 24, 2013
11 msgs
Michael Lawrence 'GRangesList' does not keep metadata of items Sep 2, 2013 Michael Lawrence BiocParallel status Sep 3, 2013 Michael Lawrence 'GRangesList' does not keep metadata of items Sep 3, 2013 Michael Lawrence expand,VCF and the AD geno field Sep 4, 2013 Michael Lawrence UCSC Table Query Failing For Large Ranges Sep 4, 2013 Michael Lawrence coercing DataFrame to data.frame Sep 13, 2013 Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013 Michael Lawrence deprecation of keepSeqlevels and renameSeqlevels Sep 18, 2013 Michael Lawrence expand,VCF and the AD geno field Sep 24, 2013

Michael Love

Last active: Sep 18, 2013
2 msgs
Michael Love Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 13, 2013 Michael Love Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013

Michael Stadler

Last active: Sep 16, 2013
2 msgs
Michael Stadler setdiff error (GenomicRanges) Sep 6, 2013 Michael Stadler plot methylation figure for end analysis Sep 16, 2013

Nicolas Delhomme

Last active: Sep 28, 2013
3 msgs
Nicolas Delhomme How to update the data in a data package? Sep 5, 2013 Nicolas Delhomme How to update the data in a data package? Sep 6, 2013 Nicolas Delhomme memory not mapped error when installing Bioc 2.13 packages on R 3.0.2 Sep 28, 2013

Ramon Diaz-Uriarte

Last active: Sep 17, 2013
7 msgs
Ramon Diaz-Uriarte R and Bioconductor versions for the forthcoming release Sep 17, 2013 Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013 Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013 Ramon Diaz-Uriarte R and Bioconductor versions for the forthcoming release Sep 17, 2013 Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013 Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013 Ramon Diaz-Uriarte R-3.0.2 and vignettes that should not be built Sep 17, 2013

Renaud Gaujoux

Last active: Sep 27, 2013
2 msgs
Renaud Gaujoux Clarifying/simplifying on the SVN-Github mirroring Sep 26, 2013 Renaud Gaujoux Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013

Ryan

Last active: Sep 30, 2013
2 msgs
Ryan Splitting design matrix contrast pivoting logic into a separate function? Sep 1, 2013 Ryan Proof-of-concept parallel preloading FastqStreamer Sep 30, 2013

Stadler, Michael

Last active: Sep 12, 2013
2 msgs
Stadler, Michael error in subsetting "ShortReadQ" object Sep 12, 2013 Stadler, Michael error in subsetting "ShortReadQ" object Sep 12, 2013

Steve Lianoglou

Last active: Sep 27, 2013
1 msg
Steve Lianoglou Clarifying/simplifying on the SVN-Github mirroring Sep 27, 2013

Tim Triche, Jr.

Last active: Sep 17, 2013
2 msgs
Tim Triche, Jr. plot methylation figure for end analysis Sep 12, 2013 Tim Triche, Jr. deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013

Valerie Obenchain

Last active: Sep 24, 2013
4 msgs
Valerie Obenchain expand,VCF and the AD geno field Sep 5, 2013 Valerie Obenchain error in subsetting "ShortReadQ" object Sep 12, 2013 Valerie Obenchain Subsetting GRangesList with mcols on the mcols: Error in normalizeSingleBracketSubscript Sep 18, 2013 Valerie Obenchain expand,VCF and the AD geno field Sep 24, 2013

Vincent Carey

Last active: Sep 17, 2013
1 msg
Vincent Carey deprecation of keepSeqlevels and renameSeqlevels Sep 17, 2013

Wen Yao

Last active: Sep 9, 2013
2 msgs
Wen Yao New Bioconductor package: intansv Sep 7, 2013 Wen Yao New Bioconductor package: intansv Sep 9, 2013

Wolfgang Huber

Last active: Sep 15, 2013
1 msg
Wolfgang Huber R-version (was: IRanges: 'extractROWS' fails for 'RangedData') Sep 15, 2013