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Bioc-devel October 2013

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Thursday, October 31, 2013 4 emails
Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Martin Morgan odd param behavior with scanBam from Rsamtools 1.14.1 Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Luo Weijun Freezen download statistics for packages
Wednesday, October 30, 2013 6 emails
Dan Tenenbaum Freezen download statistics for packages Hervé Pagès Subsetting an RleList object Jonathan Cairns European Developers' Meeting 2013 Michael Lawrence Subsetting an RleList object Hervé Pagès Subsetting an RleList object Michael Lawrence Subsetting an RleList object
Tuesday, October 29, 2013 15 emails
Hervé Pagès Subsetting an RleList object Luo Weijun Freezen download statistics for packages Luo Weijun Freezen download statistics for packages Michael Lawrence Subsetting an RleList object Hervé Pagès Subsetting an RleList object Thomas Sandmann Subsetting an RleList object Thomas Sandmann Subsetting an RleList object Dan Tenenbaum Freezen download statistics for packages Hervé Pagès Subsetting an RleList object Hervé Pagès Freezen download statistics for packages Luo Weijun Freezen download statistics for packages Dan Tenenbaum Freezen download statistics for packages Luo Weijun Freezen download statistics for packages Michael Lawrence GenomicRanges, masking problem Johannes Waage GenomicRanges, masking problem
Monday, October 28, 2013 2 emails
Hervé Pagès Subsetting an RleList object Hervé Pagès Subsetting an RleList object
Friday, October 25, 2013 3 emails
Martin Morgan upgrade instructions at http://bioconductor.org/install/ Thomas Sandmann Subsetting an RleList object Thomas Sandmann Subsetting an RleList object
Thursday, October 24, 2013 2 emails
露崎 弘毅 New package for meta-analysis in RNA-seq (metaSeq) Levi Waldron upgrade instructions at http://bioconductor.org/install/
Wednesday, October 23, 2013 5 emails
Hervé Pagès Running Perl Scripts from R package Warden, Charles Running Perl Scripts from R package Dan Tenenbaum Running Perl Scripts from R package Gabriel Becker Running Perl Scripts from R package Warden, Charles Running Perl Scripts from R package
Tuesday, October 22, 2013 4 emails
Kasper Daniel Hansen biocValid, update Elsa Bernard new package (flipflop) Julian Gehring new package (flipflop) Elsa Bernard new package (flipflop)
Monday, October 21, 2013 1 email
Kasper Daniel Hansen IMPORTANT inst/doc/*Rnw to vignettes/
Sunday, October 20, 2013 3 emails
Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/ Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/ Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/
Friday, October 18, 2013 1 email
Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/
Thursday, October 17, 2013 4 emails
Yihui Xie Linking to HTML documents in a package on the BioC web site Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Julian Gehring Linking to HTML documents in a package on the BioC web site Nicolas Delhomme SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages
Wednesday, October 16, 2013 5 emails
Marc Carlson Update policy on experiment data and annotation packages Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Dan Tenenbaum SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Michael Lawrence SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages
Tuesday, October 15, 2013 6 emails
Dan Tenenbaum Bioconductor 2.13 is released Kristoffer Knudsen Problem with GRanges Martin Morgan Problem with GRanges Martin Morgan Problem with GRanges Michael Lawrence Problem with GRanges Kristoffer Knudsen Problem with GRanges
Monday, October 14, 2013 4 emails
Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Dan Tenenbaum BioC 2.13 branch created Dan Tenenbaum Important: Bioconductor 2.13 branch to be created today Alexander Ploner Heatplus Heatmap Fails for Hidden Dendrogram and Labels
Sunday, October 13, 2013 2 emails
Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Pedro Madrigal CexoR: new Bioconductor package for peak-pair calling in ChIP-exo data with replicates
Friday, October 11, 2013 6 emails
Pedro Madrigal DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting Dan Tenenbaum how could I get new packages list Ou, Jianhong how could I get new packages list Dan Tenenbaum how could I get new packages list Dan Tenenbaum how could I get new packages list Ou, Jianhong how could I get new packages list
Thursday, October 10, 2013 2 emails
Julian Gehring Update policy on experiment data and annotation packages laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery
Wednesday, October 9, 2013 9 emails
Dan Tenenbaum Emergent build and check errors on the Windows Server Re: release builds have stopped Luo Weijun Emergent build and check errors on the Windows Server Re: release builds have stopped Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Dan Tenenbaum release builds have stopped Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery
Tuesday, October 8, 2013 2 emails
Dan Tenenbaum Preparing package release notes Hervé Pagès could bsseq::data.frame2GRanges be added to GenomicRanges
Monday, October 7, 2013 5 emails
Dan Tenenbaum Is it too late to make an update to an existing package? Frederic Fournier Is it too late to make an update to an existing package? Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Steve Lianoglou could bsseq::data.frame2GRanges be added to GenomicRanges
Sunday, October 6, 2013 7 emails
Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Michael Lawrence could bsseq::data.frame2GRanges be added to GenomicRanges Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Hector Corrada Bravo could bsseq::data.frame2GRanges be added to GenomicRanges Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges
Saturday, October 5, 2013 4 emails
Kasper Daniel Hansen build server Dan Tenenbaum build server Dan Tenenbaum build server Kasper Daniel Hansen build server
Friday, October 4, 2013 2 emails
Marc Carlson Courtesy message about the upcoming release Dan Tenenbaum Reminder: Warning deadline approaching
Thursday, October 3, 2013 4 emails
Ryan New pvectorize implementation Dan Tenenbaum oneChannelGUI devel rcaloger oneChannelGUI devel rcaloger oneChannelGUI devel
Wednesday, October 2, 2013 2 emails
Martin Morgan Proof-of-concept parallel preloading FastqStreamer Gregoire Pau Proof-of-concept parallel preloading FastqStreamer
Tuesday, October 1, 2013 2 emails
Hervé Pagès isActiveSeq deprecated Hahne, Florian isActiveSeq deprecated
Monday, September 30, 2013 1 email
Eitan Halper-Stromberg New Bioconductor package: ArrayTV