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Bioc-devel October 2013

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Alexander Ploner

Last active: Oct 14, 2013
1 msg
Alexander Ploner Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 14, 2013

Dan Tenenbaum

Last active: Oct 30, 2013
20 msgs
Dan Tenenbaum oneChannelGUI devel Oct 3, 2013 Dan Tenenbaum Reminder: Warning deadline approaching Oct 4, 2013 Dan Tenenbaum build server Oct 5, 2013 Dan Tenenbaum build server Oct 5, 2013 Dan Tenenbaum Is it too late to make an update to an existing package? Oct 7, 2013 Dan Tenenbaum Preparing package release notes Oct 8, 2013 Dan Tenenbaum release builds have stopped Oct 9, 2013 Dan Tenenbaum Emergent build and check errors on the Windows Server Re: release builds have stopped Oct 9, 2013 Dan Tenenbaum how could I get new packages list Oct 11, 2013 Dan Tenenbaum how could I get new packages list Oct 11, 2013 Dan Tenenbaum how could I get new packages list Oct 11, 2013 Dan Tenenbaum Important: Bioconductor 2.13 branch to be created today Oct 14, 2013 Dan Tenenbaum BioC 2.13 branch created Oct 14, 2013 Dan Tenenbaum Bioconductor 2.13 is released Oct 15, 2013 Dan Tenenbaum SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013 Dan Tenenbaum Linking to HTML documents in a package on the BioC web site Oct 17, 2013 Dan Tenenbaum Running Perl Scripts from R package Oct 23, 2013 Dan Tenenbaum Freezen download statistics for packages Oct 29, 2013 Dan Tenenbaum Freezen download statistics for packages Oct 29, 2013 Dan Tenenbaum Freezen download statistics for packages Oct 30, 2013

Dario Strbenac

Last active: Oct 14, 2013
2 msgs
Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 13, 2013 Dario Strbenac Heatplus Heatmap Fails for Hidden Dendrogram and Labels Oct 14, 2013

Eitan Halper-Stromberg

Last active: Sep 30, 2013
1 msg
Eitan Halper-Stromberg New Bioconductor package: ArrayTV Sep 30, 2013

Elsa Bernard

Last active: Oct 22, 2013
2 msgs
Elsa Bernard new package (flipflop) Oct 22, 2013 Elsa Bernard new package (flipflop) Oct 22, 2013

Frederic Fournier

Last active: Oct 7, 2013
1 msg
Frederic Fournier Is it too late to make an update to an existing package? Oct 7, 2013

Gabriel Becker

Last active: Oct 23, 2013
1 msg
Gabriel Becker Running Perl Scripts from R package Oct 23, 2013

Gordon K Smyth

Last active: Oct 20, 2013
2 msgs
Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013 Gordon K Smyth IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013

Gregoire Pau

Last active: Oct 2, 2013
1 msg
Gregoire Pau Proof-of-concept parallel preloading FastqStreamer Oct 2, 2013

Hahne, Florian

Last active: Oct 1, 2013
1 msg
Hahne, Florian isActiveSeq deprecated Oct 1, 2013

Hector Corrada Bravo

Last active: Oct 6, 2013
1 msg
Hector Corrada Bravo could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013

Henrik Bengtsson

Last active: Oct 16, 2013
2 msgs
Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013 Henrik Bengtsson SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013

Hervé Pagès

Last active: Oct 30, 2013
11 msgs
Hervé Pagès isActiveSeq deprecated Oct 1, 2013 Hervé Pagès could bsseq::data.frame2GRanges be added to GenomicRanges Oct 8, 2013 Hervé Pagès Running Perl Scripts from R package Oct 23, 2013 Hervé Pagès Subsetting an RleList object Oct 28, 2013 Hervé Pagès Subsetting an RleList object Oct 28, 2013 Hervé Pagès Freezen download statistics for packages Oct 29, 2013 Hervé Pagès Subsetting an RleList object Oct 29, 2013 Hervé Pagès Subsetting an RleList object Oct 29, 2013 Hervé Pagès Subsetting an RleList object Oct 29, 2013 Hervé Pagès Subsetting an RleList object Oct 30, 2013 Hervé Pagès Subsetting an RleList object Oct 30, 2013

Jason Byars

Last active: Oct 31, 2013
2 msgs
Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013 Jason Byars odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013

Johannes Waage

Last active: Oct 29, 2013
1 msg
Johannes Waage GenomicRanges, masking problem Oct 29, 2013

Jonathan Cairns

Last active: Oct 30, 2013
1 msg
Jonathan Cairns European Developers' Meeting 2013 Oct 30, 2013

Julian Gehring

Last active: Oct 22, 2013
3 msgs
Julian Gehring Update policy on experiment data and annotation packages Oct 10, 2013 Julian Gehring Linking to HTML documents in a package on the BioC web site Oct 17, 2013 Julian Gehring new package (flipflop) Oct 22, 2013

Kasper Daniel Hansen

Last active: Oct 22, 2013
9 msgs
Kasper Daniel Hansen build server Oct 5, 2013 Kasper Daniel Hansen build server Oct 5, 2013 Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Kasper Daniel Hansen could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 Kasper Daniel Hansen rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 Kasper Daniel Hansen IMPORTANT inst/doc/*Rnw to vignettes/ Oct 21, 2013 Kasper Daniel Hansen biocValid, update Oct 22, 2013

Kristoffer Knudsen

Last active: Oct 15, 2013
2 msgs
Kristoffer Knudsen Problem with GRanges Oct 15, 2013 Kristoffer Knudsen Problem with GRanges Oct 15, 2013

Levi Waldron

Last active: Oct 24, 2013
1 msg
Levi Waldron upgrade instructions at http://bioconductor.org/install/ Oct 24, 2013

Luo Weijun

Last active: Oct 31, 2013
6 msgs
Luo Weijun Emergent build and check errors on the Windows Server Re: release builds have stopped Oct 9, 2013 Luo Weijun Freezen download statistics for packages Oct 29, 2013 Luo Weijun Freezen download statistics for packages Oct 29, 2013 Luo Weijun Freezen download statistics for packages Oct 29, 2013 Luo Weijun Freezen download statistics for packages Oct 29, 2013 Luo Weijun Freezen download statistics for packages Oct 31, 2013

Marc Carlson

Last active: Oct 16, 2013
2 msgs
Marc Carlson Courtesy message about the upcoming release Oct 4, 2013 Marc Carlson Update policy on experiment data and annotation packages Oct 16, 2013

Martin Morgan

Last active: Oct 31, 2013
7 msgs
Martin Morgan Proof-of-concept parallel preloading FastqStreamer Oct 2, 2013 Martin Morgan Problem with GRanges Oct 15, 2013 Martin Morgan Problem with GRanges Oct 15, 2013 Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/ Oct 18, 2013 Martin Morgan IMPORTANT inst/doc/*Rnw to vignettes/ Oct 20, 2013 Martin Morgan upgrade instructions at http://bioconductor.org/install/ Oct 25, 2013 Martin Morgan odd param behavior with scanBam from Rsamtools 1.14.1 Oct 31, 2013

Michael Lawrence

Last active: Oct 30, 2013
10 msgs
Michael Lawrence could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 Michael Lawrence rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 Michael Lawrence Problem with GRanges Oct 15, 2013 Michael Lawrence SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 16, 2013 Michael Lawrence GenomicRanges, masking problem Oct 29, 2013 Michael Lawrence Subsetting an RleList object Oct 29, 2013 Michael Lawrence Subsetting an RleList object Oct 30, 2013 Michael Lawrence Subsetting an RleList object Oct 30, 2013

Nicolas Delhomme

Last active: Oct 17, 2013
1 msg
Nicolas Delhomme SUGGESTION: BioC version (e.g. 2.13) to also follow the x.y(.z) version scheme of Bioc packages Oct 17, 2013

Ou, Jianhong

Last active: Oct 11, 2013
2 msgs
Ou, Jianhong how could I get new packages list Oct 11, 2013 Ou, Jianhong how could I get new packages list Oct 11, 2013

Pedro Madrigal

Last active: Oct 13, 2013
2 msgs
Pedro Madrigal DNaseR - a new Bioconductor package for DNase-seq digital genomic footprinting Oct 11, 2013 Pedro Madrigal CexoR: new Bioconductor package for peak-pair calling in ChIP-exo data with replicates Oct 13, 2013

Ryan

Last active: Oct 3, 2013
1 msg
Ryan New pvectorize implementation Oct 3, 2013

Steve Lianoglou

Last active: Oct 7, 2013
1 msg
Steve Lianoglou could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013

Thomas Sandmann

Last active: Oct 29, 2013
4 msgs
Thomas Sandmann Subsetting an RleList object Oct 25, 2013 Thomas Sandmann Subsetting an RleList object Oct 25, 2013 Thomas Sandmann Subsetting an RleList object Oct 29, 2013 Thomas Sandmann Subsetting an RleList object Oct 29, 2013

Tim Triche, Jr.

Last active: Oct 7, 2013
4 msgs
Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 6, 2013 Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013 Tim Triche, Jr. could bsseq::data.frame2GRanges be added to GenomicRanges Oct 7, 2013

Warden, Charles

Last active: Oct 23, 2013
2 msgs
Warden, Charles Running Perl Scripts from R package Oct 23, 2013 Warden, Charles Running Perl Scripts from R package Oct 23, 2013

Yihui Xie

Last active: Oct 17, 2013
1 msg
Yihui Xie Linking to HTML documents in a package on the BioC web site Oct 17, 2013

laurent jacob

Last active: Oct 10, 2013
2 msgs
laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery Oct 9, 2013 laurent jacob rtracklayer: problem with formatting the output of ucscTableQuery Oct 10, 2013

rcaloger

Last active: Oct 3, 2013
2 msgs
rcaloger oneChannelGUI devel Oct 3, 2013 rcaloger oneChannelGUI devel Oct 3, 2013

露崎 弘毅

Last active: Oct 24, 2013
1 msg
露崎 弘毅 New package for meta-analysis in RNA-seq (metaSeq) Oct 24, 2013