Bioc-devel - November 2014 - Thread View

[Bioc-devel] supported organisms

1 msg Nov 29

Ludwig Geistlinger supported organisms Nov 29, 2014

[Bioc-devel] Regarding the function: oligonucleotideFrequency for k-mers > 11 bps

2 msgs Nov 28

Ulrich Bodenhofer Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 28, 2014

Martin Morgan Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 28, 2014

[Bioc-devel] BioC 3.0 CHECK ERROR

7 msgs Nov 28

Joachim Schumann BioC 3.0 CHECK ERROR Nov 26, 2014

Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014

Dan Tenenbaum BioC 3.0 CHECK ERROR Nov 26, 2014

Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014

Dan Tenenbaum BioC 3.0 CHECK ERROR Nov 26, 2014

Martin Morgan BioC 3.0 CHECK ERROR Nov 26, 2014

Joachim Schumann BioC 3.0 CHECK ERROR Nov 28, 2014

[Bioc-devel] Regarding the function: oligonucleotideFrequency for k-mers > 11 bps

1 msg Nov 27

Rodrigo Bertollo de Alexandre Regarding the function: oligonucleotideFrequency for k-mers > 11 bps Nov 27, 2014

[Bioc-devel] SummarizedExperiment vs ExpressionSet

10 msgs Nov 26

Wolfgang Huber SummarizedExperiment vs ExpressionSet Nov 26, 2014

Laurent Gatto SummarizedExperiment vs ExpressionSet Nov 26, 2014

Peter Haverty SummarizedExperiment vs ExpressionSet Nov 26, 2014

Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014

Tim Triche, Jr. SummarizedExperiment vs ExpressionSet Nov 26, 2014

Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014

Hector Corrada Bravo SummarizedExperiment vs ExpressionSet Nov 26, 2014

Hervé Pagès SummarizedExperiment vs ExpressionSet Nov 26, 2014

Peter Haverty SummarizedExperiment vs ExpressionSet Nov 26, 2014

Michael Lawrence SummarizedExperiment vs ExpressionSet Nov 26, 2014

[Bioc-devel] Fast accessor for assay names of SummarizedExperiment

2 msgs Nov 25

Peter Hickey Fast accessor for assay names of SummarizedExperiment Nov 25, 2014

Martin Morgan Fast accessor for assay names of SummarizedExperiment Nov 25, 2014

[Bioc-devel] faster gene id conversion?

5 msgs Nov 24

Karl Stamm faster gene id conversion? Nov 21, 2014

Vincent Carey faster gene id conversion? Nov 22, 2014

Sean Davis faster gene id conversion? Nov 22, 2014

Karl Stamm faster gene id conversion? Nov 24, 2014

Sean Davis faster gene id conversion? Nov 24, 2014

[Bioc-devel] MacOS-specific error in VariantAnnotation::locateVariants() in devel

2 msgs Nov 21

Dan Tenenbaum MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014

Robert Castelo MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014

[Bioc-devel] MacOS-specific error in VariantAnnotation::locateVariants() in devel

1 msg Nov 21

Robert Castelo MacOS-specific error in VariantAnnotation::locateVariants() in devel Nov 21, 2014

[Bioc-devel] BiocParallel-devel error

2 msgs Nov 20

Thomas Girke BiocParallel-devel error Nov 20, 2014

Vincent Carey BiocParallel-devel error Nov 20, 2014

[Bioc-devel] BiocParallel-devel error

1 msg Nov 19

Thomas Girke BiocParallel-devel error Nov 19, 2014

[Bioc-devel] Error when using read.450k.exp from minfi 1.13.1

2 msgs Nov 18

Jovana Maksimovic Error when using read.450k.exp from minfi 1.13.1 Nov 18, 2014

Kasper Daniel Hansen Error when using read.450k.exp from minfi 1.13.1 Nov 18, 2014

[Bioc-devel] Can't seem to use useDevel(); biocLite() for BioC 3.1

10 msgs Nov 18

Leonardo Collado Torres Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014

Kasper Daniel Hansen Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014

Leonardo Collado Torres Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014

Dan Tenenbaum Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 2, 2014

Hervé Pagès Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 4, 2014

Hahne, Florian Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 5, 2014

Dan Tenenbaum Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 5, 2014

Hahne, Florian Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 10, 2014

Henrik Bengtsson Can't seem to use useDevel(); biocLite() for BioC 3.1 Nov 18, 2014

[Bioc-devel] Experimental data package 'seqc'

1 msg Nov 18

Wei Shi Experimental data package 'seqc' Nov 18, 2014

[Bioc-devel] plotPCA generic added to BiocGenerics package

1 msg Nov 18

Nathaniel Hayden plotPCA generic added to BiocGenerics package Nov 18, 2014

[Bioc-devel] Re: [Rd] ShortRead::FastqStreamer and parallelization

1 msg Nov 18

Martin Morgan ShortRead::FastqStreamer and parallelization Nov 18, 2014

[Bioc-devel] proteomics/MS generic

1 msg Nov 18

Vladislav Petyuk proteomics/MS generic Nov 18, 2014

[Bioc-devel] Fwd: proteomics/MS generic

1 msg Nov 18

Laurent Gatto proteomics/MS generic Nov 18, 2014

[Bioc-devel] Help with creating first Bioconductor package

11 msgs Nov 15

January Weiner Help with creating first Bioconductor package Nov 14, 2014

Julian Gehring Help with creating first Bioconductor package Nov 14, 2014

Tim Triche, Jr. Help with creating first Bioconductor package Nov 14, 2014

Laurent Gatto Help with creating first Bioconductor package Nov 14, 2014

Stephanie M. Gogarten Help with creating first Bioconductor package Nov 14, 2014

Martin Morgan Help with creating first Bioconductor package Nov 14, 2014

January Weiner Help with creating first Bioconductor package Nov 14, 2014

Dan Tenenbaum Help with creating first Bioconductor package Nov 14, 2014

Martin Morgan Help with creating first Bioconductor package Nov 14, 2014

January Weiner Help with creating first Bioconductor package Nov 15, 2014

Martin Morgan Help with creating first Bioconductor package Nov 15, 2014

[Bioc-devel] Github link broken?

2 msgs Nov 14

Dan Tenenbaum Github link broken? Nov 13, 2014

Joseph Nathaniel Paulson Github link broken? Nov 14, 2014

[Bioc-devel] Help with creating first Bioconductor package

1 msg Nov 14

Dan Tenenbaum Help with creating first Bioconductor package Nov 14, 2014

[Bioc-devel] Github link broken?

1 msg Nov 13

Joseph Nathaniel Paulson Github link broken? Nov 13, 2014

[Bioc-devel] PPA with built bioconductor packages (for continuous integration)

10 msgs Nov 10

Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 9, 2014

Tim Triche, Jr. PPA with built bioconductor packages (for continuous integration) Nov 9, 2014

Martin Morgan PPA with built bioconductor packages (for continuous integration) Nov 9, 2014

Dan Tenenbaum PPA with built bioconductor packages (for continuous integration) Nov 9, 2014

Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Martin Morgan PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Vincent Carey PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Laurent Gautier PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Dan Tenenbaum PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

Tim Triche, Jr. PPA with built bioconductor packages (for continuous integration) Nov 10, 2014

[Bioc-devel] Error when creating git-svn bridge

1 msg Nov 10

Dan Tenenbaum Error when creating git-svn bridge Nov 10, 2014

[Bioc-devel] bioc pkgs depending on packages that are only in github?

8 msgs Nov 10

Vincent Carey bioc pkgs depending on packages that are only in github? Nov 8, 2014

Tim Triche, Jr. bioc pkgs depending on packages that are only in github? Nov 8, 2014

Michael Lawrence bioc pkgs depending on packages that are only in github? Nov 8, 2014

Kasper Daniel Hansen bioc pkgs depending on packages that are only in github? Nov 8, 2014

Martin Morgan bioc pkgs depending on packages that are only in github? Nov 8, 2014

Michael Lawrence bioc pkgs depending on packages that are only in github? Nov 9, 2014

Gabriel Becker bioc pkgs depending on packages that are only in github? Nov 10, 2014

[Bioc-devel] Error when creating git-svn bridge

1 msg Nov 10

Peter Humburg Error when creating git-svn bridge Nov 10, 2014

[Bioc-devel] please "watch" the tags on the support site that correspond to packages you maintain

1 msg Nov 9

Dan Tenenbaum please "watch" the tags on the support site that correspond to packages you maintain Nov 9, 2014

[Bioc-devel] please "watch" the tags on the support site that correspond to packages you maintain

1 msg Nov 7

Dan Tenenbaum please "watch" the tags on the support site that correspond to packages you maintain Nov 7, 2014

[Bioc-devel] Changes to Hits class in devel branch affecting distanceToNearest method

1 msg Nov 7

Peter Hickey Changes to Hits class in devel branch affecting distanceToNearest method Nov 7, 2014

[Bioc-devel] Employment with the Bioconductor core team

1 msg Nov 7

Martin Morgan Employment with the Bioconductor core team Nov 7, 2014

[Bioc-devel] More than 1 citation in landing page

2 msgs Nov 5

Dan Tenenbaum More than 1 citation in landing page Nov 1, 2014

Leonardo Collado Torres More than 1 citation in landing page Nov 5, 2014

[Bioc-devel] Changes to Hits class in devel branch affecting distanceToNearest method

2 msgs Nov 5

Peter Hickey Changes to Hits class in devel branch affecting distanceToNearest method Nov 5, 2014

Hervé Pagès Changes to Hits class in devel branch affecting distanceToNearest method Nov 5, 2014

[Bioc-devel] error: 2 arguments passed to .Internal(ls) which requires 3

12 msgs Nov 5

Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Martin Morgan error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Dan Tenenbaum error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Dan Tenenbaum error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Kasper Daniel Hansen error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Martin Morgan error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 4, 2014

Hahne, Florian error: 2 arguments passed to .Internal(ls) which requires 3 Nov 5, 2014

Laurent Gatto error: 2 arguments passed to .Internal(ls) which requires 3 Nov 5, 2014

[Bioc-devel] Trouble with loading R Packages from source control

2 msgs Nov 4

Tolkappiyan Premkumar Trouble with loading R Packages from source control Nov 4, 2014

Vincent Carey Trouble with loading R Packages from source control Nov 4, 2014

[Bioc-devel] biocValid vs biocLite

1 msg Nov 3

Laurent Gatto biocValid vs biocLite Nov 3, 2014

[Bioc-devel] R-devel update schedule/strategy for Bioc devel build machines

1 msg Nov 3

Gabriel Becker R-devel update schedule/strategy for Bioc devel build machines Nov 3, 2014

[Bioc-devel] plotPCA for BiocGenerics

6 msgs Nov 2

Michael Love plotPCA for BiocGenerics Nov 1, 2014

Kasper Daniel Hansen plotPCA for BiocGenerics Nov 1, 2014

Wolfgang Huber plotPCA for BiocGenerics Nov 2, 2014

Tim Triche, Jr. plotPCA for BiocGenerics Nov 2, 2014

Michael Lawrence plotPCA for BiocGenerics Nov 2, 2014

[Bioc-devel] rhdf5 help

1 msg Nov 1

Wolfgang Huber rhdf5 help Nov 1, 2014

Bioc-devel November 2014