Bioc-devel - February 2015 - Thread View

[Bioc-devel] A question on adding data in R package development

3 msgs Feb 28

Li, Dongmei A question on adding data in R package development Feb 28, 2015

Laurent Gatto A question on adding data in R package development Feb 28, 2015

Li, Dongmei A question on adding data in R package development Feb 28, 2015

[Bioc-devel] Fwd: proteomics/MS generic

2 msgs Feb 28

Laurent Gatto proteomics/MS generic Feb 28, 2015

[Bioc-devel] 100k SVN commits...

3 msgs Feb 28

Hervé Pagès 100k SVN commits... Feb 27, 2015

Martin Morgan 100k SVN commits... Feb 28, 2015

[Bioc-devel] 100k SVN commits...

1 msg Feb 27

Martin Morgan 100k SVN commits... Feb 27, 2015

[Bioc-devel] Feature Request--add host and port to makeTxDbPackageFromBiomart

2 msgs Feb 27

Sean Davis Feature Request--add host and port to makeTxDbPackageFromBiomart Feb 27, 2015

Marc Carlson Feature Request--add host and port to makeTxDbPackageFromBiomart Feb 27, 2015

[Bioc-devel] Bioconductor 3.1 release schedule now available

1 msg Feb 27

Dan Tenenbaum Bioconductor 3.1 release schedule now available Feb 27, 2015

[Bioc-devel] Bioconductor 3.1 release schedule now available

1 msg Feb 27

Dan Tenenbaum Bioconductor 3.1 release schedule now available Feb 27, 2015

[Bioc-devel] Importing classes into NAMESPACE

8 msgs Feb 26

Karolis Uziela Importing classes into NAMESPACE Feb 25, 2015

Michael Lawrence Importing classes into NAMESPACE Feb 25, 2015

Thomas Sandmann Importing classes into NAMESPACE Feb 25, 2015

Gabriel Becker Importing classes into NAMESPACE Feb 25, 2015

Karolis Uziela Importing classes into NAMESPACE Feb 25, 2015

Gabriel Becker Importing classes into NAMESPACE Feb 25, 2015

Michael Lawrence Importing classes into NAMESPACE Feb 25, 2015

Hervé Pagès Importing classes into NAMESPACE Feb 26, 2015

[Bioc-devel] show method for CompressedVRangesList-class

12 msgs Feb 26

Robert Castelo show method for CompressedVRangesList-class Feb 24, 2015

Michael Lawrence show method for CompressedVRangesList-class Feb 24, 2015

Robert Castelo show method for CompressedVRangesList-class Feb 24, 2015

Michael Lawrence show method for CompressedVRangesList-class Feb 24, 2015

Robert Castelo show method for CompressedVRangesList-class Feb 25, 2015

Michael Lawrence show method for CompressedVRangesList-class Feb 25, 2015

Robert Castelo show method for CompressedVRangesList-class Feb 25, 2015

Michael Lawrence show method for CompressedVRangesList-class Feb 25, 2015

Gabriel Becker show method for CompressedVRangesList-class Feb 25, 2015

Michael Lawrence show method for CompressedVRangesList-class Feb 25, 2015

Robert Castelo show method for CompressedVRangesList-class Feb 26, 2015

[Bioc-devel] BamTallyParam argument 'which'

16 msgs Feb 25

Thomas Sandmann BamTallyParam argument 'which' Feb 20, 2015

Michael Lawrence BamTallyParam argument 'which' Feb 20, 2015

Thomas Sandmann BamTallyParam argument 'which' Feb 22, 2015

Michael Lawrence BamTallyParam argument 'which' Feb 23, 2015

Thomas Sandmann BamTallyParam argument 'which' Feb 23, 2015

Michael Lawrence BamTallyParam argument 'which' Feb 23, 2015

Leonard Goldstein BamTallyParam argument 'which' Feb 23, 2015

Michael Lawrence BamTallyParam argument 'which' Feb 23, 2015

Hervé Pagès BamTallyParam argument 'which' Feb 23, 2015

Leonard Goldstein BamTallyParam argument 'which' Feb 23, 2015

Leonardo Collado Torres BamTallyParam argument 'which' Feb 24, 2015

Gabriel Becker BamTallyParam argument 'which' Feb 25, 2015

Michael Lawrence BamTallyParam argument 'which' Feb 25, 2015

Hervé Pagès BamTallyParam argument 'which' Feb 25, 2015

[Bioc-devel] GRanges to VRanges coercion

4 msgs Feb 23

Thomas Sandmann GRanges to VRanges coercion Feb 19, 2015

Michael Lawrence GRanges to VRanges coercion Feb 20, 2015

Hervé Pagès GRanges to VRanges coercion Feb 20, 2015

Valerie Obenchain GRanges to VRanges coercion Feb 23, 2015

[Bioc-devel] A quick check for matching seqnames/order needed for Views on RleList?

7 msgs Feb 23

Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015

Malcolm Perry A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015

Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015

Kasper Daniel Hansen A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015

Hervé Pagès A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015

Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 21, 2015

Cook, Malcolm A quick check for matching seqnames/order needed for Views on RleList? Feb 23, 2015

[Bioc-devel] Confused by readGAlignments(scanBamParam( which ))

1 msg Feb 23

Leonardo Collado Torres Confused by readGAlignments(scanBamParam( which )) Feb 23, 2015

[Bioc-devel] baySeq countData class bug?

1 msg Feb 23

Tom Hardcastle baySeq countData class bug? Feb 23, 2015

[Bioc-devel] Random access to sequences in fasta files

1 msg Feb 20

Hervé Pagès Random access to sequences in fasta files Feb 20, 2015

[Bioc-devel] A quick questions on writing R functions

5 msgs Feb 20

Li, Dongmei A quick questions on writing R functions Feb 20, 2015

Elena Grassi A quick questions on writing R functions Feb 20, 2015

Li, Dongmei A quick questions on writing R functions Feb 20, 2015

Gabriel Becker A quick questions on writing R functions Feb 20, 2015

Li, Dongmei A quick questions on writing R functions Feb 20, 2015

[Bioc-devel] baySeq countData class bug?

1 msg Feb 20

Panagiotis Moulos baySeq countData class bug? Feb 20, 2015

[Bioc-devel] Fwd: readGAlignmentsFromBam function

1 msg Feb 19

Hervé Pagès readGAlignmentsFromBam function Feb 19, 2015

[Bioc-devel] Fwd: readGAlignmentsFromBam function

1 msg Feb 19

Michael Lawrence readGAlignmentsFromBam function Feb 19, 2015

[Bioc-devel] GEOquery Warnings When Reading SOFT File

2 msgs Feb 19

Dario Strbenac GEOquery Warnings When Reading SOFT File Feb 18, 2015

James W. MacDonald GEOquery Warnings When Reading SOFT File Feb 19, 2015

[Bioc-devel] Documentation of GenomicRanges::follow etc. very hard to find

13 msgs Feb 19

Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Martin Morgan Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

James W. MacDonald Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Hervé Pagès Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Dan Tenenbaum Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Kasper Daniel Hansen Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Hervé Pagès Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Martin Morgan Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Michael Lawrence Documentation of GenomicRanges::follow etc. very hard to find Feb 18, 2015

Philip Lijnzaad Documentation of GenomicRanges::follow etc. very hard to find Feb 19, 2015

[Bioc-devel] [conference announcement] Call for papers: CIBB 2015, Naples, September 10-12, 2015

1 msg Feb 17

Paola Rancoita Call for papers: CIBB 2015, Naples, September 10-12, 2015 Feb 17, 2015

[Bioc-devel] cryptic error in VariantAnnotation::locateVariants()

2 msgs Feb 16

Robert Castelo cryptic error in VariantAnnotation::locateVariants() Feb 16, 2015

Valerie Obenchain cryptic error in VariantAnnotation::locateVariants() Feb 16, 2015

[Bioc-devel] OrganismDb and associated TxDb

3 msgs Feb 16

Vincent Carey OrganismDb and associated TxDb Feb 13, 2015

Marc Carlson OrganismDb and associated TxDb Feb 13, 2015

Hahne, Florian OrganismDb and associated TxDb Feb 16, 2015

[Bioc-devel] Masked version of BSgenome.Hsapiens.NCBI.GRCh38?

4 msgs Feb 13

Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 8, 2015

Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 8, 2015

Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 13, 2015

[Bioc-devel] VariantAnnotation::isDelins() ??

3 msgs Feb 11

Valerie Obenchain VariantAnnotation::isDelins() ?? Feb 10, 2015

Robert Castelo VariantAnnotation::isDelins() ?? Feb 11, 2015

Valerie Obenchain VariantAnnotation::isDelins() ?? Feb 11, 2015

[Bioc-devel] function name clash between TFBSTools and graphics

2 msgs Feb 11

Elena Grassi function name clash between TFBSTools and graphics Feb 11, 2015

Martin Morgan function name clash between TFBSTools and graphics Feb 11, 2015

[Bioc-devel] VariantAnnotation::isDelins() ??

1 msg Feb 10

Robert Castelo VariantAnnotation::isDelins() ?? Feb 10, 2015

[Bioc-devel] vignettes is missing after build

3 msgs Feb 10

Guangchuang Yu vignettes is missing after build Feb 10, 2015

Martin Morgan vignettes is missing after build Feb 10, 2015

Guangchuang Yu vignettes is missing after build Feb 10, 2015

[Bioc-devel] Install edgeR

2 msgs Feb 8

def87 at gmx.de Install edgeR Feb 8, 2015

Martin Morgan Install edgeR Feb 8, 2015

[Bioc-devel] Error in citation info for SPAN.UPC

4 msgs Feb 6

Ryan Error in citation info for SPAN.UPC Feb 6, 2015

Dan Tenenbaum Error in citation info for SPAN.UPC Feb 6, 2015

[Bioc-devel] Masked version of BSgenome.Hsapiens.NCBI.GRCh38?

1 msg Feb 6

Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 6, 2015

[Bioc-devel] subtle error with VariantAnnotation::locateVariants()

2 msgs Feb 3

Valerie Obenchain subtle error with VariantAnnotation::locateVariants() Feb 3, 2015

Robert Castelo subtle error with VariantAnnotation::locateVariants() Feb 3, 2015

[Bioc-devel] subtle error with VariantAnnotation::locateVariants()

1 msg Feb 3

Robert Castelo subtle error with VariantAnnotation::locateVariants() Feb 3, 2015

[Bioc-devel] [workshop announcement]: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015

1 msg Feb 2

Wolfgang Huber : Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015 Feb 2, 2015

Bioc-devel February 2015