Bioc-devel - February 2015 - Subject View

100k SVN commits...

4 msgs · Feb 27 – Feb 28

Martin Morgan 100k SVN commits... Feb 27, 2015 Hervé Pagès 100k SVN commits... Feb 27, 2015 Hervé Pagès 100k SVN commits... Feb 27, 2015 Martin Morgan 100k SVN commits... Feb 28, 2015

: Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015

1 msg · Feb 2

Wolfgang Huber : Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015 Feb 2, 2015

A question on adding data in R package development

3 msgs · Feb 28 – Feb 28

Li, Dongmei A question on adding data in R package development Feb 28, 2015 Laurent Gatto A question on adding data in R package development Feb 28, 2015 Li, Dongmei A question on adding data in R package development Feb 28, 2015

A quick check for matching seqnames/order needed for Views on RleList?

7 msgs · Feb 20 – Feb 23

Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015 Malcolm Perry A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015 Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015 Kasper Daniel Hansen A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015 Hervé Pagès A quick check for matching seqnames/order needed for Views on RleList? Feb 20, 2015 Sean Davis A quick check for matching seqnames/order needed for Views on RleList? Feb 21, 2015 Cook, Malcolm A quick check for matching seqnames/order needed for Views on RleList? Feb 23, 2015

A quick questions on writing R functions

5 msgs · Feb 20 – Feb 20

Li, Dongmei A quick questions on writing R functions Feb 20, 2015 Elena Grassi A quick questions on writing R functions Feb 20, 2015 Li, Dongmei A quick questions on writing R functions Feb 20, 2015 Gabriel Becker A quick questions on writing R functions Feb 20, 2015 Li, Dongmei A quick questions on writing R functions Feb 20, 2015

BamTallyParam argument 'which'

16 msgs · Feb 20 – Feb 25

Bioconductor 3.1 release schedule now available

2 msgs · Feb 27 – Feb 27

Dan Tenenbaum Bioconductor 3.1 release schedule now available Feb 27, 2015 Dan Tenenbaum Bioconductor 3.1 release schedule now available Feb 27, 2015

Call for papers: CIBB 2015, Naples, September 10-12, 2015

1 msg · Feb 17

Paola Rancoita Call for papers: CIBB 2015, Naples, September 10-12, 2015 Feb 17, 2015

Confused by readGAlignments(scanBamParam( which ))

1 msg · Feb 23

Leonardo Collado Torres Confused by readGAlignments(scanBamParam( which )) Feb 23, 2015

Documentation of GenomicRanges::follow etc. very hard to find

13 msgs · Feb 18 – Feb 19

Error in citation info for SPAN.UPC

4 msgs · Feb 6 – Feb 6

Ryan Error in citation info for SPAN.UPC Feb 6, 2015 Dan Tenenbaum Error in citation info for SPAN.UPC Feb 6, 2015 Dan Tenenbaum Error in citation info for SPAN.UPC Feb 6, 2015 Dan Tenenbaum Error in citation info for SPAN.UPC Feb 6, 2015

Feature Request--add host and port to makeTxDbPackageFromBiomart

2 msgs · Feb 27 – Feb 27

Sean Davis Feature Request--add host and port to makeTxDbPackageFromBiomart Feb 27, 2015 Marc Carlson Feature Request--add host and port to makeTxDbPackageFromBiomart Feb 27, 2015

GEOquery Warnings When Reading SOFT File

2 msgs · Feb 18 – Feb 19

Dario Strbenac GEOquery Warnings When Reading SOFT File Feb 18, 2015 James W. MacDonald GEOquery Warnings When Reading SOFT File Feb 19, 2015

GRanges to VRanges coercion

4 msgs · Feb 19 – Feb 23

Thomas Sandmann GRanges to VRanges coercion Feb 19, 2015 Michael Lawrence GRanges to VRanges coercion Feb 20, 2015 Hervé Pagès GRanges to VRanges coercion Feb 20, 2015 Valerie Obenchain GRanges to VRanges coercion Feb 23, 2015

Importing classes into NAMESPACE

8 msgs · Feb 25 – Feb 26

Karolis Uziela Importing classes into NAMESPACE Feb 25, 2015 Michael Lawrence Importing classes into NAMESPACE Feb 25, 2015 Thomas Sandmann Importing classes into NAMESPACE Feb 25, 2015 Gabriel Becker Importing classes into NAMESPACE Feb 25, 2015 Karolis Uziela Importing classes into NAMESPACE Feb 25, 2015 Gabriel Becker Importing classes into NAMESPACE Feb 25, 2015 Michael Lawrence Importing classes into NAMESPACE Feb 25, 2015 Hervé Pagès Importing classes into NAMESPACE Feb 26, 2015

Install edgeR

2 msgs · Feb 8 – Feb 8

def87 at gmx.de Install edgeR Feb 8, 2015 Martin Morgan Install edgeR Feb 8, 2015

Masked version of BSgenome.Hsapiens.NCBI.GRCh38?

5 msgs · Feb 6 – Feb 13

Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 6, 2015 Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 8, 2015 Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 8, 2015 Ulrich Bodenhofer Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 8, 2015 Hervé Pagès Masked version of BSgenome.Hsapiens.NCBI.GRCh38? Feb 13, 2015

OrganismDb and associated TxDb

3 msgs · Feb 13 – Feb 16

Vincent Carey OrganismDb and associated TxDb Feb 13, 2015 Marc Carlson OrganismDb and associated TxDb Feb 13, 2015 Hahne, Florian OrganismDb and associated TxDb Feb 16, 2015

Random access to sequences in fasta files

1 msg · Feb 20

Hervé Pagès Random access to sequences in fasta files Feb 20, 2015

VariantAnnotation::isDelins() ??

4 msgs · Feb 10 – Feb 11

Robert Castelo VariantAnnotation::isDelins() ?? Feb 10, 2015 Valerie Obenchain VariantAnnotation::isDelins() ?? Feb 10, 2015 Robert Castelo VariantAnnotation::isDelins() ?? Feb 11, 2015 Valerie Obenchain VariantAnnotation::isDelins() ?? Feb 11, 2015

baySeq countData class bug?

2 msgs · Feb 20 – Feb 23

Panagiotis Moulos baySeq countData class bug? Feb 20, 2015 Tom Hardcastle baySeq countData class bug? Feb 23, 2015

cryptic error in VariantAnnotation::locateVariants()

2 msgs · Feb 16 – Feb 16

Robert Castelo cryptic error in VariantAnnotation::locateVariants() Feb 16, 2015 Valerie Obenchain cryptic error in VariantAnnotation::locateVariants() Feb 16, 2015

function name clash between TFBSTools and graphics

2 msgs · Feb 11 – Feb 11

Elena Grassi function name clash between TFBSTools and graphics Feb 11, 2015 Martin Morgan function name clash between TFBSTools and graphics Feb 11, 2015

proteomics/MS generic

2 msgs · Feb 28 – Feb 28

Laurent Gatto proteomics/MS generic Feb 28, 2015 Laurent Gatto proteomics/MS generic Feb 28, 2015

readGAlignmentsFromBam function

2 msgs · Feb 19 – Feb 19

Michael Lawrence readGAlignmentsFromBam function Feb 19, 2015 Hervé Pagès readGAlignmentsFromBam function Feb 19, 2015

show method for CompressedVRangesList-class

12 msgs · Feb 24 – Feb 26

subtle error with VariantAnnotation::locateVariants()

3 msgs · Feb 3 – Feb 3

Robert Castelo subtle error with VariantAnnotation::locateVariants() Feb 3, 2015 Valerie Obenchain subtle error with VariantAnnotation::locateVariants() Feb 3, 2015 Robert Castelo subtle error with VariantAnnotation::locateVariants() Feb 3, 2015

vignettes is missing after build

3 msgs · Feb 10 – Feb 10

Guangchuang Yu vignettes is missing after build Feb 10, 2015 Martin Morgan vignettes is missing after build Feb 10, 2015 Guangchuang Yu vignettes is missing after build Feb 10, 2015

Bioc-devel February 2015