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Bioc-devel May 2015

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'memory not mapped' in trimLRpatterns

2 msgs
Hervé Pagès 'memory not mapped' in trimLRpatterns May 6, 2015 Michael Stadler 'memory not mapped' in trimLRpatterns May 8, 2015

Epigenomics RoadMap Project files now accessible via AnnotationHub

1 msg
Arora, Sonali Epigenomics RoadMap Project files now accessible via AnnotationHub May 26, 2015

Meta-information about bioc and bioc-package releases

4 msgs
Gabriel Becker Meta-information about bioc and bioc-package releases May 27, 2015 Dan Tenenbaum Meta-information about bioc and bioc-package releases May 27, 2015 Gabriel Becker Meta-information about bioc and bioc-package releases May 27, 2015 Dan Tenenbaum Meta-information about bioc and bioc-package releases May 27, 2015

New Package: acde

1 msg
Juan Pablo Acosta New Package: acde May 26, 2015

New package : CausalR

1 msg
Glyn Bradley New package : CausalR May 18, 2015

Overloading subset operator for an S4 object with more than two dimensions

5 msgs
Christian Arnold Overloading subset operator for an S4 object with more than two dimensions May 14, 2015 Wolfgang Huber Overloading subset operator for an S4 object with more than two dimensions May 14, 2015 Michael Lawrence Overloading subset operator for an S4 object with more than two dimensions May 14, 2015 Christian Arnold Overloading subset operator for an S4 object with more than two dimensions May 18, 2015 Martin Morgan Overloading subset operator for an S4 object with more than two dimensions May 18, 2015

Package end-of-life policy

1 msg
Martin Morgan Package end-of-life policy May 15, 2015

RSS package feeds not updated

2 msgs
Michael Love RSS package feeds not updated May 26, 2015 Dan Tenenbaum RSS package feeds not updated May 26, 2015

Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()?

2 msgs
Leonardo Collado Torres Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()? May 21, 2015 Valerie Obenchain Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()? May 22, 2015

Short URLs for packages?

1 msg
Robert Castelo Short URLs for packages? May 4, 2015

Should flowCore be importing checkAtAssignment from methods?

4 msgs
Josef Spidlen Should flowCore be importing checkAtAssignment from methods? May 11, 2015 Michael Lawrence Should flowCore be importing checkAtAssignment from methods? May 11, 2015 Martin Morgan Should flowCore be importing checkAtAssignment from methods? May 11, 2015 Michael Lawrence Should flowCore be importing checkAtAssignment from methods? May 11, 2015

SummarizedExperiment exptData() patch

1 msg
Hervé Pagès SummarizedExperiment exptData() patch May 12, 2015

Use and Usability metrics / shields

15 msgs
Martin Morgan Use and Usability metrics / shields May 9, 2015 Wolfgang Huber Use and Usability metrics / shields May 9, 2015 COMMO Frederic Use and Usability metrics / shields May 10, 2015 Dan Tenenbaum Use and Usability metrics / shields May 13, 2015 Henrik Bengtsson Use and Usability metrics / shields May 13, 2015 Dan Tenenbaum Use and Usability metrics / shields May 13, 2015 Wolfgang Huber Use and Usability metrics / shields May 14, 2015 Dan Tenenbaum Use and Usability metrics / shields May 14, 2015 Dan Tenenbaum Use and Usability metrics / shields May 14, 2015 Martin Morgan Use and Usability metrics / shields May 14, 2015 Jim Hester Use and Usability metrics / shields May 14, 2015 Dan Tenenbaum Use and Usability metrics / shields May 14, 2015 Leonardo Collado Torres Use and Usability metrics / shields May 19, 2015 Dan Tenenbaum Use and Usability metrics / shields May 19, 2015 Henrik Bengtsson Use and Usability metrics / shields May 20, 2015

VRanges-class positive strandness and locateVariants() strandawareness

3 msgs
Robert Castelo VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015 Michael Lawrence VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015 Robert Castelo VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015

best way to transition users to new version of package

5 msgs
Robert M. Flight best way to transition users to new version of package May 27, 2015 Wolfgang Huber best way to transition users to new version of package May 27, 2015 Robert M. Flight best way to transition users to new version of package May 28, 2015 Martin Morgan best way to transition users to new version of package May 28, 2015 Robert M. Flight best way to transition users to new version of package May 28, 2015

custom genome

4 msgs
Eric P custom genome May 8, 2015 Vincent Carey custom genome May 9, 2015 Martin Morgan custom genome May 9, 2015 Eric P custom genome May 10, 2015

exptData(SummarizedExperiment)

12 msgs
Tim Triche, Jr. exptData(SummarizedExperiment) May 11, 2015 Hervé Pagès exptData(SummarizedExperiment) May 11, 2015 Michael Lawrence exptData(SummarizedExperiment) May 11, 2015 Tim Triche, Jr. exptData(SummarizedExperiment) May 11, 2015 Hervé Pagès exptData(SummarizedExperiment) May 11, 2015 Michael Lawrence exptData(SummarizedExperiment) May 12, 2015 Hervé Pagès exptData(SummarizedExperiment) May 12, 2015 Michael Lawrence exptData(SummarizedExperiment) May 12, 2015 Vincent Carey exptData(SummarizedExperiment) May 12, 2015 Kasper Daniel Hansen exptData(SummarizedExperiment) May 13, 2015 Tim Triche, Jr. exptData(SummarizedExperiment) May 13, 2015 Vincent Carey exptData(SummarizedExperiment) May 13, 2015

jupyter notebooks as vignettes?

3 msgs
Martin Morgan jupyter notebooks as vignettes? May 20, 2015 Gabriel Becker jupyter notebooks as vignettes? May 20, 2015 Michael Lawrence jupyter notebooks as vignettes? May 20, 2015

missing font causes build warning on bioc release packages

1 msg
Dan Tenenbaum missing font causes build warning on bioc release packages May 27, 2015

missing font causes build warning on bioc release packages

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Ludwig Geistlinger missing font causes build warning on bioc release packages May 27, 2015

rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range

4 msgs
Leonardo Collado Torres rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 19, 2015 Valerie Obenchain rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015 Michael Lawrence rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015 Leonardo Collado Torres rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015

support site / tracker / registration site - scheduled downtime tomorrow

1 msg
Dan Tenenbaum support site / tracker / registration site - scheduled downtime tomorrow May 27, 2015

triform - Bioconductor Package up for Adoption

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Arora, Sonali triform - Bioconductor Package up for Adoption May 22, 2015

upcoming changes - maintainer integration with support site

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Dan Tenenbaum upcoming changes - maintainer integration with support site May 22, 2015 Henrik Bengtsson upcoming changes - maintainer integration with support site May 26, 2015 Dan Tenenbaum upcoming changes - maintainer integration with support site May 26, 2015 Henrik Bengtsson upcoming changes - maintainer integration with support site May 26, 2015