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Bioc-devel May 2015

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[Bioc-devel] best way to transition users to new version of package
5 msgs
Robert M. Flight best way to transition users to new version of package May 27, 2015
Wolfgang Huber best way to transition users to new version of package May 27, 2015
Robert M. Flight best way to transition users to new version of package May 28, 2015
Martin Morgan best way to transition users to new version of package May 28, 2015
Robert M. Flight best way to transition users to new version of package May 28, 2015
[Bioc-devel] Meta-information about bioc and bioc-package releases
3 msgs
Dan Tenenbaum Meta-information about bioc and bioc-package releases May 27, 2015
Gabriel Becker Meta-information about bioc and bioc-package releases May 27, 2015
Dan Tenenbaum Meta-information about bioc and bioc-package releases May 27, 2015
[Bioc-devel] Meta-information about bioc and bioc-package releases
1 msg
Gabriel Becker Meta-information about bioc and bioc-package releases May 27, 2015
[Bioc-devel] missing font causes build warning on bioc release packages
1 msg
Dan Tenenbaum missing font causes build warning on bioc release packages May 27, 2015
[Bioc-devel] support site / tracker / registration site - scheduled downtime tomorrow
1 msg
Dan Tenenbaum support site / tracker / registration site - scheduled downtime tomorrow May 27, 2015
[Bioc-devel] missing font causes build warning on bioc release packages
1 msg
Ludwig Geistlinger missing font causes build warning on bioc release packages May 27, 2015
[Bioc-devel] upcoming changes - maintainer integration with support site
4 msgs
Dan Tenenbaum upcoming changes - maintainer integration with support site May 22, 2015
Henrik Bengtsson upcoming changes - maintainer integration with support site May 26, 2015
Dan Tenenbaum upcoming changes - maintainer integration with support site May 26, 2015
Henrik Bengtsson upcoming changes - maintainer integration with support site May 26, 2015
[Bioc-devel] Epigenomics RoadMap Project files now accessible via AnnotationHub
1 msg
Arora, Sonali Epigenomics RoadMap Project files now accessible via AnnotationHub May 26, 2015
[Bioc-devel] RSS package feeds not updated
2 msgs
Michael Love RSS package feeds not updated May 26, 2015
Dan Tenenbaum RSS package feeds not updated May 26, 2015
[Bioc-devel] New Package: acde
1 msg
Juan Pablo Acosta New Package: acde May 26, 2015
[Bioc-devel] Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()?
1 msg
Valerie Obenchain Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()? May 22, 2015
[Bioc-devel] VRanges-class positive strandness and locateVariants() strandawareness
3 msgs
Robert Castelo VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015
Michael Lawrence VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015
Robert Castelo VRanges-class positive strandness and locateVariants() strandawareness May 22, 2015
[Bioc-devel] triform - Bioconductor Package up for Adoption
1 msg
Arora, Sonali triform - Bioconductor Package up for Adoption May 22, 2015
[Bioc-devel] Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()?
1 msg
Leonardo Collado Torres Redirect workers output to STDERR, how to do so with current BiocParallel::SnowParam()? May 21, 2015
[Bioc-devel] rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range
3 msgs
Valerie Obenchain rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015
Michael Lawrence rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015
Leonardo Collado Torres rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 20, 2015
[Bioc-devel] jupyter notebooks as vignettes?
3 msgs
Martin Morgan jupyter notebooks as vignettes? May 20, 2015
Gabriel Becker jupyter notebooks as vignettes? May 20, 2015
Michael Lawrence jupyter notebooks as vignettes? May 20, 2015
[Bioc-devel] Use and Usability metrics / shields
15 msgs
Martin Morgan Use and Usability metrics / shields May 9, 2015
Wolfgang Huber Use and Usability metrics / shields May 9, 2015
COMMO Frederic Use and Usability metrics / shields May 10, 2015
Dan Tenenbaum Use and Usability metrics / shields May 13, 2015
Henrik Bengtsson Use and Usability metrics / shields May 13, 2015
Dan Tenenbaum Use and Usability metrics / shields May 13, 2015
Wolfgang Huber Use and Usability metrics / shields May 14, 2015
Dan Tenenbaum Use and Usability metrics / shields May 14, 2015
Dan Tenenbaum Use and Usability metrics / shields May 14, 2015
Martin Morgan Use and Usability metrics / shields May 14, 2015
Jim Hester Use and Usability metrics / shields May 14, 2015
Dan Tenenbaum Use and Usability metrics / shields May 14, 2015
Leonardo Collado Torres Use and Usability metrics / shields May 19, 2015
Dan Tenenbaum Use and Usability metrics / shields May 19, 2015
Henrik Bengtsson Use and Usability metrics / shields May 20, 2015
[Bioc-devel] rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range
1 msg
Leonardo Collado Torres rtracklayer::import( as = 'NumericList' ) doesn't work with more than 1 range May 19, 2015
[Bioc-devel] New package : CausalR
1 msg
Glyn Bradley New package : CausalR May 18, 2015
[Bioc-devel] Overloading subset operator for an S4 object with more than two dimensions
5 msgs
Christian Arnold Overloading subset operator for an S4 object with more than two dimensions May 14, 2015
Wolfgang Huber Overloading subset operator for an S4 object with more than two dimensions May 14, 2015
Michael Lawrence Overloading subset operator for an S4 object with more than two dimensions May 14, 2015
Christian Arnold Overloading subset operator for an S4 object with more than two dimensions May 18, 2015
Martin Morgan Overloading subset operator for an S4 object with more than two dimensions May 18, 2015
[Bioc-devel] Package end-of-life policy
1 msg
Martin Morgan Package end-of-life policy May 15, 2015
[Bioc-devel] exptData(SummarizedExperiment)
10 msgs
Hervé Pagès exptData(SummarizedExperiment) May 11, 2015
Michael Lawrence exptData(SummarizedExperiment) May 11, 2015
Hervé Pagès exptData(SummarizedExperiment) May 11, 2015
Michael Lawrence exptData(SummarizedExperiment) May 12, 2015
Hervé Pagès exptData(SummarizedExperiment) May 12, 2015
Michael Lawrence exptData(SummarizedExperiment) May 12, 2015
Vincent Carey exptData(SummarizedExperiment) May 12, 2015
Kasper Daniel Hansen exptData(SummarizedExperiment) May 13, 2015
Tim Triche, Jr. exptData(SummarizedExperiment) May 13, 2015
Vincent Carey exptData(SummarizedExperiment) May 13, 2015
[Bioc-devel] SummarizedExperiment exptData() patch
1 msg
Hervé Pagès SummarizedExperiment exptData() patch May 12, 2015
[Bioc-devel] Should flowCore be importing checkAtAssignment from methods?
4 msgs
Josef Spidlen Should flowCore be importing checkAtAssignment from methods? May 11, 2015
Michael Lawrence Should flowCore be importing checkAtAssignment from methods? May 11, 2015
Martin Morgan Should flowCore be importing checkAtAssignment from methods? May 11, 2015
Michael Lawrence Should flowCore be importing checkAtAssignment from methods? May 11, 2015
[Bioc-devel] exptData(SummarizedExperiment)
1 msg
Tim Triche, Jr. exptData(SummarizedExperiment) May 11, 2015
[Bioc-devel] exptData(SummarizedExperiment)
1 msg
Tim Triche, Jr. exptData(SummarizedExperiment) May 11, 2015
[Bioc-devel] custom genome
4 msgs
Eric P custom genome May 8, 2015
Vincent Carey custom genome May 9, 2015
Martin Morgan custom genome May 9, 2015
Eric P custom genome May 10, 2015
[Bioc-devel] 'memory not mapped' in trimLRpatterns
2 msgs
Hervé Pagès 'memory not mapped' in trimLRpatterns May 6, 2015
Michael Stadler 'memory not mapped' in trimLRpatterns May 8, 2015
[Bioc-devel] Short URLs for packages?
1 msg
Robert Castelo Short URLs for packages? May 4, 2015